output/MEME_query_seqs_20180629_files/meme.txt Version 1
_p_SUSPHIRE/_I_T31_mealybug/_S_P4_cand_genomic/_A_MEME-bioinfo/
SEEK ID: https://fairdomhub.org/data_files/5964?version=1
Filename:
output/MEME_query_seqs_20180629_files/meme.txt
Format: Plain text document
Size: 77.9 KB
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MEME - Motif discovery tool
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MEME version 5.0.1 (Release date: Thu Jun 21 11:55:30 2018 -0700)
For further information on how to interpret these results or to get
a copy of the MEME software please access http://meme-suite.org .
This file may be used as input to the MAST algorithm for searching
sequence databases for matches to groups of motifs. MAST is available
for interactive use and downloading at http://meme-suite.org .
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REFERENCE
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If you use this program in your research, please cite:
Timothy L. Bailey and Charles Elkan,
"Fitting a mixture model by expectation maximization to discover
motifs in biopolymers", Proceedings of the Second International
Conference on Intelligent Systems for Molecular Biology, pp. 28-36,
AAAI Press, Menlo Park, California, 1994.
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TRAINING SET
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PRIMARY SEQUENCES= sequences.fa
CONTROL SEQUENCES= --none--
ALPHABET= ACDEFGHIKLMNPQRSTVWY
Sequence name Weight Length Sequence name Weight Length
------------- ------ ------ ------------- ------ ------
Artemisia_FDS-5 1.0000 394 Tanacetum_CDS_CCI2 1.0000 335
Gallus_FDPS 1.0000 367 tr|A0A0U2D675|A0A0U2D675 1.0000 425
tr|Q9ZPJ3|Q9ZPJ3_ARTAN 1.0000 343 sp|Q09152|FPPS1_ARATH 1.0000 384
tr|D6WSE7|D6WSE7_TRICA 1.0000 169 tr|Q56CY8|Q56CY8_ANTGR 1.0000 378
tr|J9QQQ8|J9QQQ8_TETFS 1.0000 435 tr|Q58GE9|Q58GE9_IPSPI 1.0000 433
tr|Q56CY7|Q56CY7_9CUCU 1.0000 429 ORFfromAK386356.1 1.0000 427
tr|Q1XAB0|Q1XAB0_CHOFU 1.0000 368 tr|A0A075D844|A0A075D844 1.0000 424
tr|F4WXE7|F4WXE7_ACREC 1.0000 362 tr|E2B2E9|E2B2E9_HARSA 1.0000 356
tr|B1PI49|B1PI49_MYZPE 1.0000 394 tr|E0VQL3|E0VQL3_PEDHC 1.0000 343
tr|B0VZA8|B0VZA8_CULQU 1.0000 380 tr|Q7KN61|Q7KN61_DROME 1.0000 419
WP_001408463.1 1.0000 299
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COMMAND LINE SUMMARY
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This information can also be useful in the event you wish to report a
problem with the MEME software.
command: meme sequences.fa -protein -oc . -nostatus -time 18000 -mod zoops -nmotifs 3 -minw 6 -maxw 50 -objfun classic -markov_order 0
model: mod= zoops nmotifs= 3 evt= inf
objective function: em= E-value of product of p-values
starts= E-value of product of p-values
width: minw= 6 maxw= 50
nsites: minsites= 2 maxsites= 21 wnsites= 0.8
theta: spmap= pam spfuzz= 120
em: prior= megap b= 39320 maxiter= 50
distance= 1e-05
trim: wg= 11 ws= 1 endgaps= yes
data: n= 7864 N= 21
sample: seed= 0 hsfrac= 0
searchsize= 7864 norand= no csites= 1000
Dirichlet mixture priors file: prior30.plib
Letter frequencies in dataset:
A 0.0624 C 0.0193 D 0.0628 E 0.0614 F 0.0407 G 0.0486 H 0.0247 I 0.0609 K 0.0726
L 0.105 M 0.036 N 0.043 P 0.0364 Q 0.0479 R 0.0507 S 0.0561 T 0.0579 V 0.0567
W 0.0112 Y 0.0454
Background letter frequencies (from file dataset with add-one prior applied):
A 0.0624 C 0.0193 D 0.0628 E 0.0614 F 0.0407 G 0.0486 H 0.0247 I 0.0609 K 0.0726
L 0.105 M 0.036 N 0.043 P 0.0364 Q 0.0479 R 0.0507 S 0.0561 T 0.0579 V 0.0567
W 0.0112 Y 0.0454
Background model order: 0
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MOTIF ASILGWCIEMLQAYFLILDDIMDNSETRRGQPCWYRLPDVG MEME-1 width = 41 sites = 19 llr = 1682 E-value = 5.9e-431
********************************************************************************
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Motif ASILGWCIEMLQAYFLILDDIMDNSETRRGQPCWYRLPDVG MEME-1 Description
--------------------------------------------------------------------------------
Simplified A 7:3:1::1::::6::::2::::::2:::::2:1::::::::
pos.-specific C :2::::a::::::1:::1::::::::::::::9::::::::
probability D ::::::::::::::::::9a::9::1:::::::::::24::
matrix E ::::::::a:::::1:::::::11:3:::::::::::11::
F ::::::::::3::45:::::1:::::1:::::::3::::::
G :1::9:::::::11:::::::::41::::9::::::::3:9
H :1:::::::::3:1:::1:::::1:2::::::::2:11:::
I 115::::4:11:::1142::71:::11:::11:::::::2:
K :::::::::::::1:::::::::::::::::::::21:1:1
L :1:8:::1:26:::1824:::::::2::::12:::131:1:
M :::2:::::51:::::1:::18::::1::::::::::::1:
N :2::::::::::::::::1::::4:::::1:::::::21::
P :::::::::::::::::::::::::::::::8:::::3:::
Q :1:::::::::6::2::::::1:1:1::::5:::::2:1::
R :1:::::::::1:::::::::::1:::aa:1::::71::::
S 22::::::::::2::::1::::::7:::::1::::::1:::
T :::::::2::::21:1:1::::::117:::::::::1::::
V 1:21:::3::1::11:41::11:::1::::1:::::2::6:
W :::::a:::2:::::::::::::::::::::::a:::::::
Y :11::::::::::3::::::::::::1:::::::5:1::::
bits 6.5 * *
5.8 ** *
5.2 ** **
4.5 ** ** **
Relative 3.9 *** * * * *** *** *
Entropy 3.2 *** ** * ***** *** **** *
(127.7 bits) 2.6 * ***** ** ** *** ******* **** ***** **
1.9 * *************** ******* ********** ****
1.3 *****************************************
0.6 *****************************************
0.0 -----------------------------------------
Multilevel AXILGWCIEMLQAFFLVLDDIMDGSETRRGQPCWYRLPDVG
consensus A V LFHSY I N A FK DGI
sequence T W H N
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif ASILGWCIEMLQAYFLILDDIMDNSETRRGQPCWYRLPDVG MEME-1 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name Start P-value Site
------------- ----- --------- -----------------------------------------
Tanacetum_CDS_CCI2 68 9.40e-47 EELTEDEAFL ACALGWCTEWLQAFILVLDDIMDGSHTRRGQPCWFRLPEVG VVAINDGVLL
sp|Q09152|FPPS1_ARATH 117 6.24e-46 NDLTEQEVFL SCALGWCIEWLQAYFLVLDDIMDNSVTRRGQPCWFRVPQVG MVAINDGILL
Artemisia_FDS-5 127 2.26e-43 EELTEEEAFL ACALGWCTEWFQAFILLHDDMMDGSHTRRGQPCWFRLPEVG AVAINDGVLL
tr|Q9ZPJ3|Q9ZPJ3_ARTAN 76 9.68e-43 GELSDDEIFL SSALGWCIEWLQAYFLVLDDIMDESHTRRGQPCWFRLLKVG MIAANDGILL
tr|B1PI49|B1PI49_MYZPE 125 7.22e-41 SDQTDENLKL SYILGWCVEILQAYQLVLDDIMDNAITRRGRPCWYRHNDIG LMAVNDGVLL
tr|Q7KN61|Q7KN61_DROME 154 8.20e-41 QDLTPENIKL AQYLGWCVEMLQSFFIISDDVMDNSTTRRGQPCWHKVENVG LTAINDALMI
tr|Q56CY7|Q56CY7_9CUCU 160 2.88e-40 EKLTPENIRL ASILGWCAEMVHAYVLILDDIMDGSETRRGALCWFRQSGIG LTAVNDAVMI
tr|B0VZA8|B0VZA8_CULQU 115 6.81e-40 HELTPENIRR AHYLGWCIEMFQSVFLICDDVMDGSQTRRGQPCWYKVDDVK LTAVNDALML
tr|Q56CY8|Q56CY8_ANTGR 109 8.68e-40 KNLTPENIKL ASVLGWCLEMIHSCFLVLDDIMDNSETRRGSLCWYRQNGIG LSAINDGLIL
tr|Q58GE9|Q58GE9_IPSPI 166 9.79e-40 AKITTENLKK AGILGWCIEMLHTYFLIIDDIIDHSDTRRGAICWYRQPGIG LTAVYDAVMM
tr|A0A0U2D675|A0A0U2D675 157 1.40e-39 ENLTPDNIRK AIILGWCVEMLQSGFLITDDFMDNAETRRGLPCWYKLDDVG KQVPNDLLLL
Gallus_FDPS 99 9.22e-39 GQKDAESLRC ALAVGWCIELFQAFFLVADDIMDQSLTRRGQLCWYKKEGVG LDAINDSFLL
tr|E0VQL3|E0VQL3_PEDHC 75 9.87e-38 KNVSKEEIYL AQIMGWCIEILQAKLLIADDIMDNSLTRRGRPCWYLTHDLG TKALNDALLL
tr|A0A075D844|A0A075D844 156 1.37e-37 ENLTPESLRR AIILGWCTEMLQATFTVADDFMDGGDYRRGIPCWHRLDGVG TEVVNDTLLL
ORFfromAK386356.1 159 1.91e-37 ENLTPENILL ANVMGWCVEMFHTHQLLLNDIMEGTTMRRGVPCWHRRPDVG LNGINDAALI
tr|J9QQQ8|J9QQQ8_TETFS 166 5.69e-36 ENLTPENVKL ANILGWCIELLRGFELIVDDIVDNAETRRNAPCWFRKDNVG YFAIGDSILL
tr|Q1XAB0|Q1XAB0_CHOFU 100 2.62e-35 ENLTPENVHL ANVMGWCTEMFHTHQLLLNDIMEGTEMRRGAPAWHRRPDVG LSSINDAILV
tr|F4WXE7|F4WXE7_ACREC 95 2.90e-35 DQLTEENIRL VRILAWCVELMQAFLLVIDDIQDRSLIRRGQPCWYRYNDLG LAAVNDSLLL
tr|E2B2E9|E2B2E9_HARSA 87 1.09e-33 DQITEENIRA IRILAWCVELLHAFFIMIDDIQDRSQFRRNQPCWYLHNDMG LAAINDSLMI
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif ASILGWCIEMLQAYFLILDDIMDNSETRRGQPCWYRLPDVG MEME-1 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM
------------- ---------------- -------------
Tanacetum_CDS_CCI2 9.4e-47 67_[1]_227
sp|Q09152|FPPS1_ARATH 6.2e-46 116_[1]_227
Artemisia_FDS-5 2.3e-43 126_[1]_227
tr|Q9ZPJ3|Q9ZPJ3_ARTAN 9.7e-43 75_[1]_227
tr|B1PI49|B1PI49_MYZPE 7.2e-41 124_[1]_229
tr|Q7KN61|Q7KN61_DROME 8.2e-41 153_[1]_225
tr|Q56CY7|Q56CY7_9CUCU 2.9e-40 159_[1]_229
tr|B0VZA8|B0VZA8_CULQU 6.8e-40 114_[1]_225
tr|Q56CY8|Q56CY8_ANTGR 8.7e-40 108_[1]_229
tr|Q58GE9|Q58GE9_IPSPI 9.8e-40 165_[1]_227
tr|A0A0U2D675|A0A0U2D675 1.4e-39 156_[1]_228
Gallus_FDPS 9.2e-39 98_[1]_228
tr|E0VQL3|E0VQL3_PEDHC 9.9e-38 74_[1]_228
tr|A0A075D844|A0A075D844 1.4e-37 155_[1]_228
ORFfromAK386356.1 1.9e-37 158_[1]_228
tr|J9QQQ8|J9QQQ8_TETFS 5.7e-36 165_[1]_229
tr|Q1XAB0|Q1XAB0_CHOFU 2.6e-35 99_[1]_228
tr|F4WXE7|F4WXE7_ACREC 2.9e-35 94_[1]_227
tr|E2B2E9|E2B2E9_HARSA 1.1e-33 86_[1]_229
--------------------------------------------------------------------------------
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Motif ASILGWCIEMLQAYFLILDDIMDNSETRRGQPCWYRLPDVG MEME-1 in BLOCKS format
--------------------------------------------------------------------------------
BL MOTIF ASILGWCIEMLQAYFLILDDIMDNSETRRGQPCWYRLPDVG width=41 seqs=19
Tanacetum_CDS_CCI2 ( 68) ACALGWCTEWLQAFILVLDDIMDGSHTRRGQPCWFRLPEVG 1
sp|Q09152|FPPS1_ARATH ( 117) SCALGWCIEWLQAYFLVLDDIMDNSVTRRGQPCWFRVPQVG 1
Artemisia_FDS-5 ( 127) ACALGWCTEWFQAFILLHDDMMDGSHTRRGQPCWFRLPEVG 1
tr|Q9ZPJ3|Q9ZPJ3_ARTAN ( 76) SSALGWCIEWLQAYFLVLDDIMDESHTRRGQPCWFRLLKVG 1
tr|B1PI49|B1PI49_MYZPE ( 125) SYILGWCVEILQAYQLVLDDIMDNAITRRGRPCWYRHNDIG 1
tr|Q7KN61|Q7KN61_DROME ( 154) AQYLGWCVEMLQSFFIISDDVMDNSTTRRGQPCWHKVENVG 1
tr|Q56CY7|Q56CY7_9CUCU ( 160) ASILGWCAEMVHAYVLILDDIMDGSETRRGALCWFRQSGIG 1
tr|B0VZA8|B0VZA8_CULQU ( 115) AHYLGWCIEMFQSVFLICDDVMDGSQTRRGQPCWYKVDDVK 1
tr|Q56CY8|Q56CY8_ANTGR ( 109) ASVLGWCLEMIHSCFLVLDDIMDNSETRRGSLCWYRQNGIG 1
tr|Q58GE9|Q58GE9_IPSPI ( 166) AGILGWCIEMLHTYFLIIDDIIDHSDTRRGAICWYRQPGIG 1
tr|A0A0U2D675|A0A0U2D675 ( 157) AIILGWCVEMLQSGFLITDDFMDNAETRRGLPCWYKLDDVG 1
Gallus_FDPS ( 99) ALAVGWCIELFQAFFLVADDIMDQSLTRRGQLCWYKKEGVG 1
tr|E0VQL3|E0VQL3_PEDHC ( 75) AQIMGWCIEILQAKLLIADDIMDNSLTRRGRPCWYLTHDLG 1
tr|A0A075D844|A0A075D844 ( 156) AIILGWCTEMLQATFTVADDFMDGGDYRRGIPCWHRLDGVG 1
ORFfromAK386356.1 ( 159) ANVMGWCVEMFHTHQLLLNDIMEGTTMRRGVPCWHRRPDVG 1
tr|J9QQQ8|J9QQQ8_TETFS ( 166) ANILGWCIELLRGFELIVDDIVDNAETRRNAPCWFRKDNVG 1
tr|Q1XAB0|Q1XAB0_CHOFU ( 100) ANVMGWCTEMFHTHQLLLNDIMEGTEMRRGAPAWHRRPDVG 1
tr|F4WXE7|F4WXE7_ACREC ( 95) VRILAWCVELMQAFLLVIDDIQDRSLIRRGQPCWYRYNDLG 1
tr|E2B2E9|E2B2E9_HARSA ( 87) IRILAWCVELLHAFFIMIDDIQDRSQFRRNQPCWYLHNDMG 1
//
--------------------------------------------------------------------------------
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Motif ASILGWCIEMLQAYFLILDDIMDNSETRRGQPCWYRLPDVG MEME-1 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 20 w= 41 n= 7024 bayes= 10.344 E= 5.9e-431
355 -107 -400 -336 -316 -139 -347 -113 -370 -317 -277 -332 -391 -360 -330 78 -213 -34 -309 -411
-130 256 -194 -107 -292 -2 91 46 -122 -102 -242 158 -229 100 89 128 -156 -206 -285 -7
193 -312 -624 -547 -333 -483 -489 287 -556 -267 -286 -498 -499 -524 -520 -418 -329 162 -426 105
-378 -367 -598 -494 -204 -513 -433 -159 -506 287 170 -499 -435 -414 -427 -446 -387 -22 -332 -416
0 -364 -333 -377 -483 417 -367 -495 -393 -546 -471 -264 -385 -425 -352 -245 -379 -407 -382 -487
-454 -410 -506 -494 -214 -435 -427 -489 -507 -362 -425 -451 -470 -459 -428 -453 -474 -418 640 -283
-366 564 -562 -504 -487 -498 -481 -443 -579 -513 -461 -494 -505 -539 -488 -442 -405 -460 -524 -591
-24 -311 -618 -541 -336 -487 -490 255 -550 -75 -282 -494 -498 -521 -516 -421 170 246 -430 -456
-480 -566 -249 398 -606 -480 -465 -549 -597 -646 -615 -422 -592 -404 -557 -514 -541 -541 -544 -632
-482 -455 -811 -712 -229 -658 -577 85 -721 115 360 -683 -595 -566 -623 -633 -497 -264 409 -478
-432 -414 -697 -595 246 -586 -509 -2 -606 248 60 -587 -517 -494 -522 -533 -444 -6 -363 -455
-327 -419 -426 -241 -470 -394 320 -453 -147 -404 -346 -277 -380 370 17 -319 -349 -404 -363 -433
320 -243 -555 -520 -499 16 -497 -493 -563 -516 -468 -434 -402 -491 -493 181 131 -310 -484 -582
-157 39 -301 -251 255 -82 144 -226 -125 -223 -216 -240 -252 -274 -237 -166 -89 -66 -47 316
-214 -233 -490 -50 352 -351 -321 78 -404 11 -166 -358 -362 136 -359 -274 -233 25 -245 -270
-342 -335 -552 -449 -196 -472 -395 38 -460 293 -113 -455 -395 -376 -384 -400 -80 -165 -315 -393
-372 -364 -637 -590 -320 -560 -571 267 -595 56 45 -544 -550 -568 -576 -499 -382 275 -457 -497
117 123 -462 -367 -182 -307 83 131 -367 179 -144 -317 -326 -324 -318 -12 -4 42 -227 -270
-311 -384 378 -110 -425 -326 -269 -427 -419 -469 -445 11 -420 -369 -385 -293 -378 -376 -375 -424
-440 -495 392 -247 -542 -437 -397 -556 -548 -589 -574 -222 -517 -497 -506 -425 -505 -505 -483 -545
-305 -326 -465 -438 19 -433 -438 350 -430 -102 -14 -387 -435 -432 -426 -351 -296 121 -356 -379
-413 -369 -577 -552 -353 -493 -484 -117 -536 -221 459 -502 -482 -60 -534 -451 -425 -116 -317 -403
-309 -383 378 -27 -423 -329 -269 -424 -418 -466 -442 -84 -419 -364 -384 -296 -379 -373 -374 -424
-295 -447 -182 -10 -490 274 102 -512 -231 -504 -473 297 -355 15 96 -195 -286 -441 -461 -436
95 -235 -437 -457 -425 -26 -397 -448 -420 -475 -416 -253 -336 -415 -371 358 101 -372 -411 -464
-137 -317 56 185 -305 -225 230 -39 -129 27 -254 -139 -235 101 -146 -125 70 -18 -297 -302
-274 -285 -476 -454 18 -411 -343 -25 -421 -254 121 -289 -401 -376 -381 -123 355 -196 -288 -3
-422 -380 -547 -537 -546 -438 -298 -512 -262 -516 -525 -408 -406 -354 423 -428 -468 -542 -361 -541
-422 -380 -547 -537 -546 -438 -298 -512 -262 -516 -525 -408 -406 -354 423 -428 -468 -542 -361 -541
-222 -382 -324 -371 -484 418 -361 -497 -389 -549 -473 32 -389 -423 -349 -255 -392 -418 -381 -484
147 -241 -297 -198 -234 -269 -191 -8 -206 -76 -189 -213 -281 301 81 -4 -182 13 -256 -290
-205 -373 -397 -351 -358 -345 -349 -60 -364 11 -338 -372 439 -334 -349 -248 -304 -288 -425 -486
-286 563 -553 -493 -476 -488 -472 -431 -569 -502 -450 -483 -497 -528 -478 -428 -393 -448 -517 -582
-454 -410 -506 -494 -214 -435 -427 -489 -507 -362 -425 -451 -470 -459 -428 -453 -474 -418 640 -283
-512 -457 -619 -592 292 -548 298 -478 -585 -438 -466 -463 -539 -497 -500 -474 -525 -453 -144 336
-357 -430 -497 -338 -545 -398 -246 -462 145 -32 -422 -310 -410 -206 369 -343 -358 -419 -385 -467
-171 -319 -252 -158 -314 -259 182 -270 63 102 -260 -176 -272 151 100 -163 -8 122 -305 -2
-240 -417 161 79 -436 -228 99 -451 -230 -114 -409 218 288 -214 -256 10 -249 -377 -421 -400
-310 -488 261 90 -535 227 -256 -561 -43 -557 -532 137 -367 14 -353 -212 -311 -478 -522 -475
-314 -336 -628 -570 -340 -549 -542 176 -600 3 44 -555 -519 -574 -552 -499 -356 342 -483 -535
-218 -379 -324 -369 -480 421 -360 -492 -142 -544 -468 -257 -386 -420 -344 -253 -391 -413 -376 -480
--------------------------------------------------------------------------------
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Motif ASILGWCIEMLQAYFLILDDIMDNSETRRGQPCWYRLPDVG MEME-1 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 20 w= 41 nsites= 19 E= 5.9e-431
0.736842 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.052632 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.157895 0.000000 0.052632 0.000000 0.000000
0.000000 0.157895 0.000000 0.000000 0.000000 0.052632 0.052632 0.105263 0.000000 0.052632 0.000000 0.157895 0.000000 0.105263 0.105263 0.157895 0.000000 0.000000 0.000000 0.052632
0.263158 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.473684 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.157895 0.000000 0.105263
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.789474 0.157895 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.052632 0.000000 0.000000
0.105263 0.000000 0.000000 0.000000 0.000000 0.894737 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.052632 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.368421 0.000000 0.052632 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.210526 0.315789 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.105263 0.000000 0.210526 0.473684 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.210526 0.000000
0.000000 0.000000 0.000000 0.000000 0.263158 0.000000 0.000000 0.052632 0.000000 0.578947 0.052632 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.052632 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.315789 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.631579 0.052632 0.000000 0.000000 0.000000 0.000000 0.000000
0.578947 0.000000 0.000000 0.000000 0.000000 0.052632 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.210526 0.157895 0.000000 0.000000 0.000000
0.000000 0.052632 0.000000 0.000000 0.368421 0.052632 0.105263 0.000000 0.052632 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.052632 0.052632 0.000000 0.263158
0.000000 0.000000 0.000000 0.052632 0.526316 0.000000 0.000000 0.105263 0.000000 0.105263 0.000000 0.000000 0.000000 0.157895 0.000000 0.000000 0.000000 0.052632 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.105263 0.000000 0.842105 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.052632 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.368421 0.000000 0.157895 0.052632 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.421053 0.000000 0.000000
0.157895 0.052632 0.000000 0.000000 0.000000 0.000000 0.052632 0.157895 0.000000 0.421053 0.000000 0.000000 0.000000 0.000000 0.000000 0.052632 0.052632 0.052632 0.000000 0.000000
0.000000 0.000000 0.894737 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.105263 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.105263 0.000000 0.000000 0.736842 0.000000 0.000000 0.052632 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.105263 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.052632 0.000000 0.000000 0.789474 0.000000 0.000000 0.105263 0.000000 0.000000 0.000000 0.052632 0.000000 0.000000
0.000000 0.000000 0.894737 0.105263 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.052632 0.000000 0.368421 0.052632 0.000000 0.000000 0.000000 0.000000 0.368421 0.000000 0.052632 0.105263 0.000000 0.000000 0.000000 0.000000 0.000000
0.157895 0.000000 0.000000 0.000000 0.000000 0.052632 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.684211 0.105263 0.000000 0.000000 0.000000
0.000000 0.000000 0.105263 0.263158 0.000000 0.000000 0.157895 0.052632 0.000000 0.157895 0.000000 0.000000 0.000000 0.105263 0.000000 0.000000 0.105263 0.052632 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.052632 0.000000 0.000000 0.052632 0.000000 0.000000 0.105263 0.000000 0.000000 0.000000 0.000000 0.000000 0.736842 0.000000 0.000000 0.052632
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.894737 0.000000 0.000000 0.000000 0.000000 0.000000 0.105263 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.210526 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.052632 0.000000 0.052632 0.000000 0.000000 0.000000 0.473684 0.105263 0.052632 0.000000 0.052632 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.052632 0.000000 0.157895 0.000000 0.000000 0.789474 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.052632 0.947368 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.315789 0.000000 0.210526 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.473684
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.210526 0.105263 0.000000 0.000000 0.000000 0.000000 0.684211 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.105263 0.000000 0.105263 0.263158 0.000000 0.000000 0.000000 0.157895 0.105263 0.000000 0.052632 0.157895 0.000000 0.052632
0.000000 0.000000 0.210526 0.105263 0.000000 0.000000 0.052632 0.000000 0.000000 0.052632 0.000000 0.210526 0.315789 0.000000 0.000000 0.052632 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.421053 0.105263 0.000000 0.263158 0.000000 0.000000 0.052632 0.000000 0.000000 0.105263 0.000000 0.052632 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.210526 0.000000 0.105263 0.052632 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.631579 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.947368 0.000000 0.000000 0.052632 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif ASILGWCIEMLQAYFLILDDIMDNSETRRGQPCWYRLPDVG MEME-1 regular expression
--------------------------------------------------------------------------------
AX[IA]LGWC[IVT]E[MLW][LF][QH][AS][FY]FL[VI]LDDIMD[GN]SETRRG[QA]PCW[YFH][RK]L[PDN][DG][VI]G
--------------------------------------------------------------------------------
Time 8.25 secs.
********************************************************************************
********************************************************************************
MOTIF DDPEQHRQAKTILLEMGQFFQIQDDFLDCFGD MEME-2 width = 32 sites = 19 llr = 1387 E-value = 5.0e-364
********************************************************************************
--------------------------------------------------------------------------------
Motif DDPEQHRQAKTILLEMGQFFQIQDDFLDCFGD MEME-2 Description
--------------------------------------------------------------------------------
Simplified A ::1:1:::7:1::::::::::1::::::::11
pos.-specific C ::::::::::::::::::::::::::::9:::
probability D 38:11::1::1:::1::::::::8a::9:::8
matrix E 2:191:11::::::8::2::::::::::::::
F 1::::3::::::::::::78:::::6:::8::
G ::::::::::::::::a::::::::::1::9:
H ::1::7:::::::::::2::::::::::::::
I ::::1:1::::9:::1:1:::6::::::::::
K 2:1:1::::9::::1::::::::::::::::1
L ::3:1:::::::a6:1:111::::::a:::::
M ::::2::::::1:2:8:1::::::::::::::
N 22::1::1::1::::::1:::::1:::::::1
P ::4:::::::::::::::::::::::::::::
Q ::1:2::8:::::::::2::a:a:::::::::
R ::::::7::1:::::::1::::::::::::::
S 11::::::1::::::::1::::::::::::1:
T ::::1:::1:7::::::1:::::1::::1:::
V ::::1:2:2::1:2:::::::4::::::::::
W ::::::::::::::::::::::::::::::::
Y 1::::1::::::::::::31:::::4:::2::
bits 6.5
5.8
5.2 *
4.5 * * * *
Relative 3.9 * ** ** * ** ****
Entropy 3.2 * * *** * ** *** *** **********
(105.4 bits) 2.6 * * ************ **************
1.9 *** ************ **************
1.3 ********************************
0.6 ********************************
0.0 --------------------------------
Multilevel DDPEMHRQAKTILLEMGHFFQIQDDFLDCFGD
consensus E L QF V V QY V Y
sequence
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif DDPEQHRQAKTILLEMGQFFQIQDDFLDCFGD MEME-2 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name Start P-value Site
------------- ----- --------- --------------------------------
tr|Q56CY8|Q56CY8_ANTGR 245 6.67e-40 VAVAMYLAGM NDPEQHRQAKTILLEMGEFFQIQDDFLDCFGD PAVTGKKGTD
tr|A0A075D844|A0A075D844 291 1.68e-38 MALSMYLANL YDPEMHRQAKTILMEMGSFFQIQDDFLDCFGD PEKIGKDCND
tr|Q1XAB0|Q1XAB0_CHOFU 235 7.92e-38 VGLALLMSGV DDLETHRQAKTILLEMGQFFQIQDDFLDCFGD PAVTGKNGSD
tr|A0A0U2D675|A0A0U2D675 292 7.92e-38 MALAMYLADL YDPEMHRQAKTILMEMGLFFQIQDDFLDCFGD PEKTGKDCND
tr|Q56CY7|Q56CY7_9CUCU 296 7.46e-37 VAIAMYLAGM SDEEQHRQAKTILMEMGQFFQIQDDFLDCFGD PTVTGKVGTD
tr|E0VQL3|E0VQL3_PEDHC 210 9.71e-37 IAAAMFMAGI DDHELHRQAKTILLEMGHFFQVQDDYLDCFGD PDVMGKHGTD
tr|B1PI49|B1PI49_MYZPE 261 1.43e-36 VCLAMRMTNI NDPEIFRQAKTILLEMGHFFQVQDDFLDCYGD PDVMGKIGTD
ORFfromAK386356.1 294 1.85e-36 VSLALLMTGV DDPETHRQAKTILLKMGEFFQIQDDFLDCFGD PTVTEKYGTD
tr|Q58GE9|Q58GE9_IPSPI 301 3.45e-36 VAAAMYLLGM DDPEQHRQARTILLDMGQFFQIQDDFLDCFGD PNVTGKLGTD
tr|E2B2E9|E2B2E9_HARSA 223 3.24e-33 VTVAMHVAGI KDQEMFRQAKTILLEMGHFFQVQDDYLDCYGK PEITGKIGSD
tr|J9QQQ8|J9QQQ8_TETFS 301 5.90e-33 VALAMYFANM FDAEQHRQAKTILLEMGQFLQIQTDFLDCFGD PAGKIGNDIQ
tr|Q7KN61|Q7KN61_DROME 286 1.29e-32 FALALHLAGY KDAEAFRQSKTILLEMGNFFQVQDDFLDCFGN PEVTGKIGTD
tr|B0VZA8|B0VZA8_CULQU 247 5.45e-32 VALAMHMTGF NDPEVFRQTKTILLEIGRFFQAQDDFLDCFGD PAVTGKIGTD
tr|F4WXE7|F4WXE7_ACREC 231 1.39e-31 ITIAMHLAGI KDPEMFRQAKTILLEMGHLFQVQDDYLGCYSD VHSKDYTDIQ
Gallus_FDPS 234 1.38e-29 VAAAMYMVGI DSKEEHENAKAILLEMGEYFQIQDDYLDCFGD PALTGKVGTD
tr|Q9ZPJ3|Q9ZPJ3_ARTAN 210 7.94e-27 PVACALLMFG EDLDKHVEVKNMLVEMGTYFQVQDDYLDCFGA PEVIGKIGTD
sp|Q09152|FPPS1_ARATH 251 3.34e-26 PVACALLMAG ENLENHIDVKNVLVDMGIYFQVQDDYLDCFAD PETLGKIGTD
Tanacetum_CDS_CCI2 202 4.84e-26 PIACALLMFG ENLEDHVQVKDILVELGMYYQIQNDYLDTFGD PDVFGKTGTD
Artemisia_FDS-5 261 8.34e-24 PIACALLMFG ENLDDYVQVKDILVELGMYYQIQNDYLDTFGD PNVFGKTGTD
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif DDPEQHRQAKTILLEMGQFFQIQDDFLDCFGD MEME-2 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM
------------- ---------------- -------------
tr|Q56CY8|Q56CY8_ANTGR 6.7e-40 244_[2]_102
tr|A0A075D844|A0A075D844 1.7e-38 290_[2]_102
tr|Q1XAB0|Q1XAB0_CHOFU 7.9e-38 234_[2]_102
tr|A0A0U2D675|A0A0U2D675 7.9e-38 291_[2]_102
tr|Q56CY7|Q56CY7_9CUCU 7.5e-37 295_[2]_102
tr|E0VQL3|E0VQL3_PEDHC 9.7e-37 209_[2]_102
tr|B1PI49|B1PI49_MYZPE 1.4e-36 260_[2]_102
ORFfromAK386356.1 1.8e-36 293_[2]_102
tr|Q58GE9|Q58GE9_IPSPI 3.5e-36 300_[2]_101
tr|E2B2E9|E2B2E9_HARSA 3.2e-33 222_[2]_102
tr|J9QQQ8|J9QQQ8_TETFS 5.9e-33 300_[2]_103
tr|Q7KN61|Q7KN61_DROME 1.3e-32 285_[2]_102
tr|B0VZA8|B0VZA8_CULQU 5.5e-32 246_[2]_102
tr|F4WXE7|F4WXE7_ACREC 1.4e-31 230_[2]_100
Gallus_FDPS 1.4e-29 233_[2]_102
tr|Q9ZPJ3|Q9ZPJ3_ARTAN 7.9e-27 209_[2]_102
sp|Q09152|FPPS1_ARATH 3.3e-26 250_[2]_102
Tanacetum_CDS_CCI2 4.8e-26 201_[2]_102
Artemisia_FDS-5 8.3e-24 260_[2]_102
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif DDPEQHRQAKTILLEMGQFFQIQDDFLDCFGD MEME-2 in BLOCKS format
--------------------------------------------------------------------------------
BL MOTIF DDPEQHRQAKTILLEMGQFFQIQDDFLDCFGD width=32 seqs=19
tr|Q56CY8|Q56CY8_ANTGR ( 245) NDPEQHRQAKTILLEMGEFFQIQDDFLDCFGD 1
tr|A0A075D844|A0A075D844 ( 291) YDPEMHRQAKTILMEMGSFFQIQDDFLDCFGD 1
tr|Q1XAB0|Q1XAB0_CHOFU ( 235) DDLETHRQAKTILLEMGQFFQIQDDFLDCFGD 1
tr|A0A0U2D675|A0A0U2D675 ( 292) YDPEMHRQAKTILMEMGLFFQIQDDFLDCFGD 1
tr|Q56CY7|Q56CY7_9CUCU ( 296) SDEEQHRQAKTILMEMGQFFQIQDDFLDCFGD 1
tr|E0VQL3|E0VQL3_PEDHC ( 210) DDHELHRQAKTILLEMGHFFQVQDDYLDCFGD 1
tr|B1PI49|B1PI49_MYZPE ( 261) NDPEIFRQAKTILLEMGHFFQVQDDFLDCYGD 1
ORFfromAK386356.1 ( 294) DDPETHRQAKTILLKMGEFFQIQDDFLDCFGD 1
tr|Q58GE9|Q58GE9_IPSPI ( 301) DDPEQHRQARTILLDMGQFFQIQDDFLDCFGD 1
tr|E2B2E9|E2B2E9_HARSA ( 223) KDQEMFRQAKTILLEMGHFFQVQDDYLDCYGK 1
tr|J9QQQ8|J9QQQ8_TETFS ( 301) FDAEQHRQAKTILLEMGQFLQIQTDFLDCFGD 1
tr|Q7KN61|Q7KN61_DROME ( 286) KDAEAFRQSKTILLEMGNFFQVQDDFLDCFGN 1
tr|B0VZA8|B0VZA8_CULQU ( 247) NDPEVFRQTKTILLEIGRFFQAQDDFLDCFGD 1
tr|F4WXE7|F4WXE7_ACREC ( 231) KDPEMFRQAKTILLEMGHLFQVQDDYLGCYSD 1
Gallus_FDPS ( 234) DSKEEHENAKAILLEMGEYFQIQDDYLDCFGD 1
tr|Q9ZPJ3|Q9ZPJ3_ARTAN ( 210) EDLDKHVEVKNMLVEMGTYFQVQDDYLDCFGA 1
sp|Q09152|FPPS1_ARATH ( 251) ENLENHIDVKNVLVDMGIYFQVQDDYLDCFAD 1
Tanacetum_CDS_CCI2 ( 202) ENLEDHVQVKDILVELGMYYQIQNDYLDTFGD 1
Artemisia_FDS-5 ( 261) ENLDDYVQVKDILVELGMYYQIQNDYLDTFGD 1
//
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif DDPEQHRQAKTILLEMGQFFQIQDDFLDCFGD MEME-2 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 20 w= 32 n= 7213 bayes= 10.3823 E= 5.0e-364
-172 -365 181 160 9 -218 -166 -366 100 -361 -317 171 -260 -147 -176 15 -193 -292 -344 90
-314 -393 371 -124 -436 -303 -263 -443 -403 -483 -460 76 -413 -359 -384 -119 -365 -391 -390 -430
45 -352 -276 -33 -372 -277 61 -359 -54 72 -341 -232 369 -11 -214 -179 -230 -288 -373 -396
-448 -569 -138 395 -604 -467 -452 -542 -536 -629 -597 -406 -556 -369 -533 -486 -516 -523 -545 -625
1 -318 54 16 -306 -211 -136 -45 -5 -107 209 36 -222 183 -128 -110 70 -22 -291 -293
-564 -477 -635 -625 267 -566 469 -500 -615 -452 -483 -448 -561 -472 -502 -499 -544 -477 -150 76
-323 -339 -476 -75 -428 -393 -259 -56 -157 -365 -367 -334 -384 -259 385 -344 -347 91 -342 -451
-248 -324 -180 -65 -420 -370 -33 -382 -309 -310 -231 -99 -287 408 -214 -261 -303 -343 -283 -444
347 -148 -446 -386 -365 -173 -391 -342 -422 -368 -327 -367 -395 -400 -377 7 -49 128 -357 -458
-336 -370 -499 -430 -531 -418 -371 -411 364 -497 -445 -343 -405 -399 -22 -400 -382 -443 -383 -514
-42 -319 44 -340 -448 -300 -307 -376 -364 -485 -378 107 -377 -334 -362 -83 358 -310 -428 -481
-314 -331 -481 -455 -291 -449 -460 364 -448 -120 -6 -404 -451 -452 -445 -369 -306 95 -379 -399
-548 -523 -703 -668 -377 -581 -575 -343 -677 321 -316 -648 -564 -591 -592 -606 -562 -384 -482 -570
-442 -421 -724 -626 -233 -610 -538 -178 -638 256 200 -615 -542 -522 -555 -563 -456 175 -380 -472
-353 -610 -9 384 -622 -428 -414 -535 -149 -578 -543 -367 -444 -272 -456 -403 -440 -471 -570 -611
-436 -380 -575 -558 -355 -497 -488 -147 -544 -115 464 -506 -483 -517 -546 -459 -444 -297 -309 -400
-356 -494 -460 -507 -594 432 -483 -625 -522 -659 -604 -397 -494 -550 -476 -390 -518 -546 -490 -600
-126 -323 -181 121 -311 -210 268 -47 -110 -109 114 37 -221 184 19 17 -3 -234 -293 -293
-510 -428 -625 -603 404 -549 -272 -429 -599 -102 -423 -475 -528 -511 -518 -471 -530 -422 -152 245
-332 -260 -481 -452 437 -429 -374 -264 -490 -139 -272 -426 -376 -479 -462 -317 -419 -265 -161 12
-511 -549 -617 -417 -634 -545 -315 -647 -577 -576 -514 -506 -515 435 -481 -526 -563 -604 -513 -657
-39 -353 -630 -592 -391 -562 -617 321 -600 -251 -299 -545 -563 -606 -601 -501 -374 261 -537 -535
-511 -549 -617 -417 -634 -545 -315 -647 -577 -576 -514 -506 -515 435 -481 -526 -563 -604 -513 -657
-309 -383 376 -110 -424 -320 -266 -426 -415 -468 -444 12 -417 -365 -383 -288 -191 -376 -375 -423
-440 -495 392 -247 -542 -437 -397 -556 -548 -589 -574 -222 -517 -497 -506 -425 -505 -505 -483 -545
-574 -485 -664 -647 377 -577 -262 -502 -624 -455 -490 -484 -573 -518 -528 -516 -559 -482 -151 320
-548 -523 -703 -668 -377 -581 -575 -343 -677 321 -316 -648 -564 -591 -592 -606 -562 -384 -482 -570
-335 -406 382 -136 -448 -112 -294 -452 -445 -493 -470 -110 -440 -394 -409 -318 -402 -401 -398 -449
-347 562 -559 -502 -484 -479 -479 -439 -577 -509 -458 -489 -498 -534 -486 -421 -173 -450 -522 -587
-446 -369 -576 -552 432 -510 -293 -377 -566 -317 -379 -463 -476 -505 -504 -418 -497 -371 -156 159
-77 -362 -322 -366 -474 417 -357 -486 -382 -538 -462 -253 -378 -416 -341 -81 -376 -402 -372 -477
-185 -381 377 -106 -421 -325 -266 -423 -238 -465 -441 -32 -418 -366 -382 -292 -376 -372 -372 -421
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif DDPEQHRQAKTILLEMGQFFQIQDDFLDCFGD MEME-2 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 20 w= 32 nsites= 19 E= 5.0e-364
0.000000 0.000000 0.263158 0.210526 0.052632 0.000000 0.000000 0.000000 0.157895 0.000000 0.000000 0.157895 0.000000 0.000000 0.000000 0.052632 0.000000 0.000000 0.000000 0.105263
0.000000 0.000000 0.789474 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.157895 0.000000 0.000000 0.000000 0.052632 0.000000 0.000000 0.000000 0.000000
0.105263 0.000000 0.000000 0.052632 0.000000 0.000000 0.052632 0.000000 0.052632 0.263158 0.000000 0.000000 0.421053 0.052632 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.105263 0.894737 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.052632 0.000000 0.105263 0.052632 0.000000 0.000000 0.000000 0.052632 0.052632 0.052632 0.210526 0.052632 0.000000 0.210526 0.000000 0.000000 0.105263 0.052632 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.263158 0.000000 0.684211 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.052632
0.000000 0.000000 0.000000 0.052632 0.000000 0.000000 0.000000 0.052632 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.736842 0.000000 0.000000 0.157895 0.000000 0.000000
0.000000 0.000000 0.052632 0.052632 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.052632 0.000000 0.842105 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.684211 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.052632 0.052632 0.210526 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.947368 0.000000 0.000000 0.000000 0.000000 0.000000 0.052632 0.000000 0.000000 0.000000 0.000000 0.000000
0.052632 0.000000 0.105263 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.105263 0.000000 0.000000 0.000000 0.000000 0.736842 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.894737 0.000000 0.000000 0.052632 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.052632 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.631579 0.157895 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.210526 0.000000 0.000000
0.000000 0.000000 0.105263 0.842105 0.000000 0.000000 0.000000 0.000000 0.052632 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.052632 0.000000 0.105263 0.842105 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.157895 0.000000 0.000000 0.210526 0.052632 0.000000 0.052632 0.105263 0.052632 0.000000 0.210526 0.052632 0.052632 0.052632 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.684211 0.000000 0.000000 0.000000 0.000000 0.052632 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.263158
0.000000 0.000000 0.000000 0.000000 0.842105 0.000000 0.000000 0.000000 0.000000 0.052632 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.105263
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.052632 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.578947 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.368421 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.842105 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.105263 0.000000 0.000000 0.000000 0.000000 0.052632 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.578947 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.421053
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.947368 0.000000 0.000000 0.052632 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.894737 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.105263 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.842105 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.157895
0.052632 0.000000 0.000000 0.000000 0.000000 0.894737 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.052632 0.000000 0.000000 0.000000 0.000000
0.052632 0.000000 0.842105 0.000000 0.000000 0.000000 0.000000 0.000000 0.052632 0.000000 0.000000 0.052632 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif DDPEQHRQAKTILLEMGQFFQIQDDFLDCFGD MEME-2 regular expression
--------------------------------------------------------------------------------
[DE]D[PL]E[MQ][HF]RQ[AV]KTIL[LV]EMG[HQ][FY]FQ[IV]QDD[FY]LDCFGD
--------------------------------------------------------------------------------
Time 15.42 secs.
********************************************************************************
********************************************************************************
MOTIF GKIGTDIZDGKCSWLAVVALQRANPEQRKIMEENYGRPDPEKVAKIKELY MEME-3 width = 50 sites = 19 llr = 2070 E-value = 1.4e-542
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Motif GKIGTDIZDGKCSWLAVVALQRANPEQRKIMEENYGRPDPEKVAKIKELY MEME-3 Description
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Simplified A ::::::::1::::::51:9:::7:13:::::::::::::122:6::::::
pos.-specific C :::1:::::1:a::::::1:::1::::::::::2::::::::::1:::::
probability D ::2::a::5:::::::::::::::1:::1:::3::::16::1:::::2::
matrix E 1::::::44:::::::::::2:::25:::::77::::1215::1:::3::
F :::::::::1:::::::::::::::::::::::1:::::::::::::::1
G 9::8:::::7:::::::::::::::::::::::::a::1:::1:::::::
H ::1:::::::::::::::::::::::::1::1:2::1:::::::::::::
I ::4:::a::::::::21:::::1::::::8::::::2:::::1:35::1:
K :a1:::::::9::::::2:::1::11:47::1::::221::4:14:92::
L ::1:::::::::::a::::9:2:::::::14:::::::::::::::::9:
M :::::::::::::::::1:1::::::::::6:::::1::1:::::::1::
N ::1:2::::1:::::::::::::5:::::::::4:::1::11:1:::1::
P ::::::::::::::::::::::::5::::::::::::3:8::::::::::
Q :::::::5:::::::::1::8::::1a:2:::::::::::1::1:::2::
R :::::::1::1::::::::::8:::::6::::::::3::::::23:1:::
S 1:::1:::::::6::1::::::131::::::1::::22::12::::::::
T ::1:7:::::::4::::::::::3:::1:::::::::1::::::::::::
V ::1::::::::::::287::::2:1::::1:1::::1:::::8::5::1:
W :::::::::::::a::::::::::::::::::::::::::::::::::::
Y ::11:::::::::::::::::::::::::::1:2a::::::::::::::9
bits 6.5 *
5.8 * *
5.2 * *
4.5 * * * **
Relative 3.9 ** * ** * * * * ** * *
Entropy 3.2 ** **** ****** * **** * ** * ** * * ** *
(157.2 bits) 2.6 ** ********************************* ** * *** **
1.9 ** ********************************* *************
1.3 **************************************************
0.6 **************************************************
0.0 --------------------------------------------------
Multilevel GKIGTDIQDGKCSWLAVVALQRANPEQRKIMEENYGRPDPEKVAKIKELY
consensus EE T V K E SEA K L DC ISE AA IV K
sequence T H S R
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Motif GKIGTDIZDGKCSWLAVVALQRANPEQRKIMEENYGRPDPEKVAKIKELY MEME-3 sites sorted by position p-value
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Sequence name Start P-value Site
------------- ----- --------- --------------------------------------------------
tr|Q56CY7|Q56CY7_9CUCU 332 5.79e-55 LDCFGDPTVT GKVGTDIQDGKCSWLAVVALQRASPAQRKIMEEHYGRPEPESIARIKNLY VDLCLPNTYA
tr|Q58GE9|Q58GE9_IPSPI 337 3.44e-52 LDCFGDPNVT GKLGTDIQDGKCSWLAVMALQRSTPAQRKIMEEHYGRSEPESVAIIKQLY EDLTLPNTYA
tr|E2B2E9|E2B2E9_HARSA 259 7.20e-52 LDCYGKPEIT GKIGSDIEEGKCTWLVVVALQRVTPEQRKILEECYGISDPEKVRCVKQLY NDLGLMNMYS
tr|Q56CY8|Q56CY8_ANTGR 281 2.29e-51 LDCFGDPAVT GKKGTDIQEGKCSWLAVVALQRASAAQRKIMEEHYGVDDPNSVAIIKKLY EDLSLPNTYA
tr|B1PI49|B1PI49_MYZPE 297 1.19e-49 LDCYGDPDVM GKIGTDIEDGKCSWLAVVALQKVNSEQKKIMEDNYGIDDPANVAIIKDLY AQLKLADTFH
tr|Q1XAB0|Q1XAB0_CHOFU 271 6.36e-49 LDCFGDPAVT GKNGSDIQDGKCTWLAVVALQRASPAQRHVLEEHYGSSKPEDVEKIKELY ETLQLPHTYS
tr|B0VZA8|B0VZA8_CULQU 283 8.19e-49 LDCFGDPAVT GKIGTDIEEGKCTWLAVVCMQRASDEQKDIMKEFYGSSDPEKVARVKKLY EELGLPTTYA
tr|A0A075D844|A0A075D844 327 1.35e-48 LDCFGDPEKI GKDCNDIREGKCTWLSVVALQRANPQQRKIMEEYYGRPDMEAVKIIKKLY EELSLPNTYA
tr|E0VQL3|E0VQL3_PEDHC 246 1.53e-48 LDCFGDPDVM GKHGTDIQDGKCTWLAVVALQRINKKQRKIMEECYGHTDPQKVNKIKKLY EEIGIPATYS
ORFfromAK386356.1 330 4.12e-48 LDCFGDPTVT EKYGTDIQDGKCTWLAVVALQRATPAQKQIMEDNYGVNKPEAIARIKDLY EELQLPHTYS
tr|Q7KN61|Q7KN61_DROME 322 4.65e-48 LDCFGNPEVT GKIGTDIQDNKCSWLAVVAMQRANVEQKQIMVDCYGKEEPAKVERVKELY KELGLPSTYA
tr|F4WXE7|F4WXE7_ACREC 265 1.23e-47 DYLGCYSDVH SKDYTDIQEGKCTWLIVVALQRATPEQRKILEECYGSPDPEKVRRVRQLF TDLGLPNTYS
tr|A0A0U2D675|A0A0U2D675 328 1.56e-47 LDCFGDPEKT GKDCNDIREGKCTWLSVVALQRANPQQRKIMEEYYGRPDEEAVRIIRNLY EELSLPNTYA
Gallus_FDPS 270 1.76e-47 LDCFGDPALT GKVGTDIQDNKCSWLVVQCLQRVTPEQRQLLEDNYGRKEPEKVAKVKELY EAVGMRAAFQ
sp|Q09152|FPPS1_ARATH 287 3.63e-46 LDCFADPETL GKIGTDIEDFKCSWLVVKALERCSEEQTKILYENYGKPDPSNVAKVKDLY KELDLEGVFM
Tanacetum_CDS_CCI2 238 1.12e-45 LDTFGDPDVF GKTGTDIEECKCSWLIAKALELANEEQKKILSENYGINDPSKVAKVKELY HALDLKGAYE
tr|Q9ZPJ3|Q9ZPJ3_ARTAN 246 2.19e-45 LDCFGAPEVI GKIGTDIEDFKCSWLVVKALELANEEQKKVLHENYGKKDPASVAKVKEVY HTLNLQAVFE
Artemisia_FDS-5 297 9.09e-45 LDTFGDPNVF GKTGTDIEECKCSWLIAKALELANEEQKKILSENYGIKDPAKVAKVKEIY HALNLKGAYE
tr|J9QQQ8|J9QQQ8_TETFS 335 8.34e-43 DFLDCFGDPA GKIGNDIQAGRCSWLAIVALQRANPAQRKLMEDYYGMPGAQAGQIIKMLY EELSLPATYA
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Motif GKIGTDIZDGKCSWLAVVALQRANPEQRKIMEENYGRPDPEKVAKIKELY MEME-3 block diagrams
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SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM
------------- ---------------- -------------
tr|Q56CY7|Q56CY7_9CUCU 5.8e-55 331_[3]_48
tr|Q58GE9|Q58GE9_IPSPI 3.4e-52 336_[3]_47
tr|E2B2E9|E2B2E9_HARSA 7.2e-52 258_[3]_48
tr|Q56CY8|Q56CY8_ANTGR 2.3e-51 280_[3]_48
tr|B1PI49|B1PI49_MYZPE 1.2e-49 296_[3]_48
tr|Q1XAB0|Q1XAB0_CHOFU 6.4e-49 270_[3]_48
tr|B0VZA8|B0VZA8_CULQU 8.2e-49 282_[3]_48
tr|A0A075D844|A0A075D844 1.4e-48 326_[3]_48
tr|E0VQL3|E0VQL3_PEDHC 1.5e-48 245_[3]_48
ORFfromAK386356.1 4.1e-48 329_[3]_48
tr|Q7KN61|Q7KN61_DROME 4.7e-48 321_[3]_48
tr|F4WXE7|F4WXE7_ACREC 1.2e-47 264_[3]_48
tr|A0A0U2D675|A0A0U2D675 1.6e-47 327_[3]_48
Gallus_FDPS 1.8e-47 269_[3]_48
sp|Q09152|FPPS1_ARATH 3.6e-46 286_[3]_48
Tanacetum_CDS_CCI2 1.1e-45 237_[3]_48
tr|Q9ZPJ3|Q9ZPJ3_ARTAN 2.2e-45 245_[3]_48
Artemisia_FDS-5 9.1e-45 296_[3]_48
tr|J9QQQ8|J9QQQ8_TETFS 8.3e-43 334_[3]_51
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Motif GKIGTDIZDGKCSWLAVVALQRANPEQRKIMEENYGRPDPEKVAKIKELY MEME-3 in BLOCKS format
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BL MOTIF GKIGTDIZDGKCSWLAVVALQRANPEQRKIMEENYGRPDPEKVAKIKELY width=50 seqs=19
tr|Q56CY7|Q56CY7_9CUCU ( 332) GKVGTDIQDGKCSWLAVVALQRASPAQRKIMEEHYGRPEPESIARIKNLY 1
tr|Q58GE9|Q58GE9_IPSPI ( 337) GKLGTDIQDGKCSWLAVMALQRSTPAQRKIMEEHYGRSEPESVAIIKQLY 1
tr|E2B2E9|E2B2E9_HARSA ( 259) GKIGSDIEEGKCTWLVVVALQRVTPEQRKILEECYGISDPEKVRCVKQLY 1
tr|Q56CY8|Q56CY8_ANTGR ( 281) GKKGTDIQEGKCSWLAVVALQRASAAQRKIMEEHYGVDDPNSVAIIKKLY 1
tr|B1PI49|B1PI49_MYZPE ( 297) GKIGTDIEDGKCSWLAVVALQKVNSEQKKIMEDNYGIDDPANVAIIKDLY 1
tr|Q1XAB0|Q1XAB0_CHOFU ( 271) GKNGSDIQDGKCTWLAVVALQRASPAQRHVLEEHYGSSKPEDVEKIKELY 1
tr|B0VZA8|B0VZA8_CULQU ( 283) GKIGTDIEEGKCTWLAVVCMQRASDEQKDIMKEFYGSSDPEKVARVKKLY 1
tr|A0A075D844|A0A075D844 ( 327) GKDCNDIREGKCTWLSVVALQRANPQQRKIMEEYYGRPDMEAVKIIKKLY 1
tr|E0VQL3|E0VQL3_PEDHC ( 246) GKHGTDIQDGKCTWLAVVALQRINKKQRKIMEECYGHTDPQKVNKIKKLY 1
ORFfromAK386356.1 ( 330) EKYGTDIQDGKCTWLAVVALQRATPAQKQIMEDNYGVNKPEAIARIKDLY 1
tr|Q7KN61|Q7KN61_DROME ( 322) GKIGTDIQDNKCSWLAVVAMQRANVEQKQIMVDCYGKEEPAKVERVKELY 1
tr|F4WXE7|F4WXE7_ACREC ( 265) SKDYTDIQEGKCTWLIVVALQRATPEQRKILEECYGSPDPEKVRRVRQLF 1
tr|A0A0U2D675|A0A0U2D675 ( 328) GKDCNDIREGKCTWLSVVALQRANPQQRKIMEEYYGRPDEEAVRIIRNLY 1
Gallus_FDPS ( 270) GKVGTDIQDNKCSWLVVQCLQRVTPEQRQLLEDNYGRKEPEKVAKVKELY 1
sp|Q09152|FPPS1_ARATH ( 287) GKIGTDIEDFKCSWLVVKALERCSEEQTKILYENYGKPDPSNVAKVKDLY 1
Tanacetum_CDS_CCI2 ( 238) GKTGTDIEECKCSWLIAKALELANEEQKKILSENYGINDPSKVAKVKELY 1
tr|Q9ZPJ3|Q9ZPJ3_ARTAN ( 246) GKIGTDIEDFKCSWLVVKALELANEEQKKVLHENYGKKDPASVAKVKEVY 1
Artemisia_FDS-5 ( 297) GKTGTDIEECKCSWLIAKALELANEEQKKILSENYGIKDPAKVAKVKEIY 1
tr|J9QQQ8|J9QQQ8_TETFS ( 335) GKIGNDIQAGRCSWLAIVALQRANPAQRKLMEDYYGMPGAQAGQIIKMLY 1
//
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Motif GKIGTDIZDGKCSWLAVVALQRANPEQRKIMEENYGRPDPEKVAKIKELY MEME-3 position-specific scoring matrix
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log-odds matrix: alength= 20 w= 50 n= 6835 bayes= 8.68211 E= 1.4e-542
-208 -369 -314 -130 -471 418 -350 -483 -375 -536 -459 -246 -377 -411 -335 -89 -381 -403 -367 -471
-386 -416 -541 -479 -572 -454 -417 -463 369 -544 -496 -392 -446 -448 -100 -448 -431 -492 -427 -558
-156 -228 95 -220 -215 -271 82 236 -46 -66 -171 14 -286 -215 -228 -181 69 93 -248 -2
-213 129 -328 -373 -460 413 -360 -491 -389 -542 -468 -260 -386 -422 -348 -249 -385 -409 -371 -88
-254 -272 -389 -417 -408 -375 -353 -316 -375 -439 -319 130 -372 -339 -348 93 362 -252 -385 -481
-440 -495 392 -247 -542 -437 -397 -556 -548 -589 -574 -222 -517 -497 -506 -425 -505 -505 -483 -545
-547 -525 -725 -749 -534 -595 -664 400 -757 -439 -491 -688 -624 -728 -701 -650 -569 -256 -601 -658
-293 -589 -182 257 -610 -385 -321 -507 -198 -496 -462 -312 -375 325 96 -328 -362 -416 -524 -539
-24 -691 288 279 -651 -379 -370 -528 -295 -528 -492 -313 -361 -196 -391 -327 -370 -420 -618 -590
-207 140 -320 -370 34 399 -354 -490 -390 -538 -468 42 -383 -417 -352 -239 -370 -404 -374 -446
-336 -370 -499 -430 -531 -418 -371 -411 364 -497 -445 -343 -405 -399 -22 -400 -382 -443 -383 -514
-366 564 -562 -504 -487 -498 -481 -443 -579 -513 -461 -494 -505 -539 -488 -442 -405 -460 -524 -591
-181 -256 -437 -463 -435 -297 -401 -439 -426 -484 -416 -258 -354 -417 -381 337 258 -369 -420 -477
-454 -410 -506 -494 -214 -435 -427 -489 -507 -362 -425 -451 -470 -459 -428 -453 -474 -418 640 -283
-548 -523 -703 -668 -377 -581 -575 -343 -677 321 -316 -648 -564 -591 -592 -606 -562 -384 -482 -570
306 -223 -527 -464 -361 -266 -441 118 -491 -324 -317 -424 -427 -457 -444 77 -280 172 -400 -464
13 -204 -418 -366 -310 -373 -332 18 -407 -254 -271 -380 -325 -401 -339 -318 -195 377 -385 -473
-269 -349 -465 -322 -386 -383 -271 -233 145 -327 35 -317 -399 11 -116 -317 -294 341 -375 -422
376 222 -543 -497 -471 -239 -482 -457 -536 -483 -440 -438 -416 -483 -474 -173 -295 -281 -458 -557
-390 -377 -612 -508 -206 -525 -444 -166 -520 300 125 -513 -446 -425 -439 -460 -399 -209 -337 -422
-286 -402 -283 127 -488 -402 -115 -444 -325 -382 -308 -287 -336 399 -275 -313 -353 -393 -360 -501
-340 -323 -477 -404 -486 -375 -218 -430 -61 -73 -428 -315 -346 -241 403 -340 -372 -441 -300 -460
351 53 -395 -331 -310 -136 -342 -118 -365 -311 -271 -328 -390 -355 -325 1 -209 52 -304 -405
-252 -378 -221 -327 -542 -242 -297 -578 -388 -602 -563 334 -393 -363 -416 214 210 -459 -530 -509
-33 -374 -64 124 -408 -309 -298 -394 -81 -387 -395 -301 401 -258 -296 -33 -272 -58 -426 -466
212 -664 -141 306 -628 -380 -359 -515 -41 -513 -476 -322 -357 106 -349 -323 -361 -410 -589 -571
-511 -549 -617 -417 -634 -545 -315 -647 -577 -576 -514 -506 -515 435 -481 -526 -563 -604 -513 -657
-361 -479 -500 -324 -568 -403 -254 -472 231 -447 -420 -307 -433 -197 338 -342 -21 -414 -419 -470
-339 -468 -36 -268 -545 -355 95 -474 322 -457 -428 -240 -409 156 -93 -301 -337 -417 -425 -464
-298 -322 -452 -427 -273 -424 -432 354 -419 -26 -148 -376 -427 -424 -417 -341 -287 124 -353 -373
-500 -468 -831 -736 -234 -678 -596 -205 -745 201 389 -711 -608 -579 -641 -668 -517 -273 -389 -489
-181 -392 -175 321 -379 -262 91 -364 -16 -364 -321 -172 -273 -142 -176 79 -216 -26 -359 -5
-287 -699 195 350 -658 -389 -381 -537 -305 -537 -502 -328 -370 -206 -401 -340 -381 -430 -621 -598
-559 333 -615 -621 75 -557 300 -496 -607 -453 -486 299 -565 -508 -520 -497 -544 -474 -150 194
-695 -615 -725 -769 -331 -596 -468 -699 -760 -647 -694 -646 -625 -682 -663 -660 -697 -669 -369 444
-356 -494 -460 -507 -594 432 -483 -625 -522 -659 -604 -397 -494 -550 -476 -390 -518 -546 -490 -600
-194 -290 -319 -218 -286 -292 92 155 106 -262 42 -225 -309 -186 215 129 -213 80 -295 -324
-204 -388 71 4 -396 -221 -186 -405 99 -400 -358 129 283 -180 -212 173 -9 -331 -379 -366
-290 -547 323 180 -568 -13 -320 -517 27 -526 -495 -192 -371 -227 -379 -289 -358 -426 -532 -525
-38 -359 -364 -76 -402 -314 -320 -391 -331 -383 -19 -340 447 -304 -319 -216 -278 -319 -430 -486
156 -521 -148 300 -524 -317 -293 -477 -253 -474 -435 28 -334 105 -309 78 -308 -383 -500 -485
159 -427 1 -213 -464 -227 -219 -489 234 -484 -448 138 -336 -242 -270 179 -268 -414 -446 -420
-124 -207 -423 -371 -313 -95 -337 58 -412 -256 -274 -384 -329 -406 -344 -322 -199 377 -389 -475
293 -394 -256 78 -412 -285 -197 -387 9 -377 -336 29 -305 28 155 -196 -237 -314 -361 -375
-354 125 -499 -324 -543 -401 -254 217 230 -435 -409 -308 -431 -198 234 -339 -349 -389 -415 -464
-385 -363 -713 -665 -425 -625 -721 305 -691 -306 -353 -624 -616 -699 -698 -583 -401 302 -629 -605
-337 -371 -500 -428 -532 -418 -368 -412 363 -496 -444 -342 -405 -392 2 -399 -382 -442 -383 -514
-218 -481 123 235 -466 -307 -257 -430 135 -427 30 111 -307 156 -251 -226 -272 -344 -442 -435
-351 -341 -564 -461 -203 -485 -408 -20 -473 299 -121 -467 -407 -388 -397 -413 -359 -23 -325 -403
-570 -485 -661 -644 75 -575 -263 -502 -623 -456 -490 -484 -571 -519 -528 -514 -558 -481 -154 431
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Motif GKIGTDIZDGKCSWLAVVALQRANPEQRKIMEENYGRPDPEKVAKIKELY MEME-3 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 20 w= 50 nsites= 19 E= 1.4e-542
0.000000 0.000000 0.000000 0.052632 0.000000 0.894737 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.052632 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.157895 0.000000 0.000000 0.000000 0.052632 0.368421 0.052632 0.052632 0.000000 0.052632 0.000000 0.000000 0.000000 0.000000 0.105263 0.105263 0.000000 0.052632
0.000000 0.105263 0.000000 0.000000 0.000000 0.842105 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.052632
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.157895 0.000000 0.000000 0.000000 0.105263 0.736842 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.368421 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.526316 0.105263 0.000000 0.000000 0.000000 0.000000 0.000000
0.052632 0.000000 0.526316 0.421053 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.105263 0.000000 0.000000 0.105263 0.684211 0.000000 0.000000 0.000000 0.000000 0.000000 0.105263 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.947368 0.000000 0.000000 0.000000 0.000000 0.000000 0.052632 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.578947 0.421053 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.526316 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.157895 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.105263 0.000000 0.210526 0.000000 0.000000
0.105263 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.052632 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.842105 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.210526 0.000000 0.052632 0.000000 0.000000 0.052632 0.000000 0.000000 0.000000 0.684211 0.000000 0.000000
0.894737 0.105263 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.894737 0.105263 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.210526 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.789474 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.052632 0.157895 0.000000 0.000000 0.000000 0.000000 0.789474 0.000000 0.000000 0.000000 0.000000 0.000000
0.684211 0.052632 0.000000 0.000000 0.000000 0.000000 0.000000 0.052632 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.052632 0.000000 0.157895 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.473684 0.000000 0.000000 0.000000 0.263158 0.263158 0.000000 0.000000 0.000000
0.052632 0.000000 0.052632 0.210526 0.000000 0.000000 0.000000 0.000000 0.052632 0.000000 0.000000 0.000000 0.526316 0.000000 0.000000 0.052632 0.000000 0.052632 0.000000 0.000000
0.315789 0.000000 0.000000 0.526316 0.000000 0.000000 0.000000 0.000000 0.052632 0.000000 0.000000 0.000000 0.000000 0.105263 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.368421 0.000000 0.000000 0.000000 0.000000 0.000000 0.578947 0.000000 0.052632 0.000000 0.000000 0.000000
0.000000 0.000000 0.052632 0.000000 0.000000 0.000000 0.052632 0.000000 0.736842 0.000000 0.000000 0.000000 0.000000 0.157895 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.789474 0.000000 0.105263 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.105263 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.421053 0.578947 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.684211 0.000000 0.000000 0.052632 0.000000 0.052632 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.105263 0.000000 0.052632 0.000000 0.052632
0.000000 0.000000 0.263158 0.736842 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.210526 0.000000 0.000000 0.052632 0.000000 0.210526 0.000000 0.000000 0.000000 0.000000 0.368421 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.157895
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.052632 0.210526 0.157895 0.000000 0.052632 0.000000 0.000000 0.000000 0.263158 0.157895 0.000000 0.105263 0.000000 0.000000
0.000000 0.000000 0.105263 0.052632 0.000000 0.000000 0.000000 0.000000 0.157895 0.000000 0.000000 0.105263 0.315789 0.000000 0.000000 0.210526 0.052632 0.000000 0.000000 0.000000
0.000000 0.000000 0.631579 0.210526 0.000000 0.052632 0.000000 0.000000 0.105263 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.052632 0.000000 0.000000 0.052632 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.052632 0.000000 0.842105 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.210526 0.000000 0.000000 0.526316 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.052632 0.000000 0.105263 0.000000 0.105263 0.000000 0.000000 0.000000 0.000000
0.210526 0.000000 0.052632 0.000000 0.000000 0.000000 0.000000 0.000000 0.421053 0.000000 0.000000 0.105263 0.000000 0.000000 0.000000 0.210526 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.052632 0.000000 0.105263 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.842105 0.000000 0.000000
0.578947 0.000000 0.000000 0.105263 0.000000 0.000000 0.000000 0.000000 0.052632 0.000000 0.000000 0.052632 0.000000 0.052632 0.157895 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.052632 0.000000 0.000000 0.000000 0.000000 0.000000 0.315789 0.368421 0.000000 0.000000 0.000000 0.000000 0.000000 0.263158 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.526316 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.473684 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.894737 0.000000 0.000000 0.000000 0.000000 0.000000 0.105263 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.157895 0.315789 0.000000 0.000000 0.000000 0.000000 0.210526 0.000000 0.052632 0.105263 0.000000 0.157895 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.052632 0.000000 0.894737 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.052632 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.052632 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.947368
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif GKIGTDIZDGKCSWLAVVALQRANPEQRKIMEENYGRPDPEKVAKIKELY MEME-3 regular expression
--------------------------------------------------------------------------------
GKIGTDI[QE][DE]GKC[ST]WL[AV]V[VK]AL[QE]RA[NST][PE][EA]Q[RK]KI[ML]E[ED][NCH]YG[RI][PS][DE]P[EA][KAS]VA[KIR][IV]K[EK]LY
--------------------------------------------------------------------------------
Time 21.57 secs.
********************************************************************************
********************************************************************************
SUMMARY OF MOTIFS
********************************************************************************
--------------------------------------------------------------------------------
Combined block diagrams: non-overlapping sites with p-value < 0.0001
--------------------------------------------------------------------------------
SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM
------------- ---------------- -------------
Artemisia_FDS-5 2.11e-98 126_[1(2.26e-43)]_93_[2(8.34e-24)]_\
4_[3(9.09e-45)]_48
Tanacetum_CDS_CCI2 4.15e-105 67_[1(9.40e-47)]_93_[2(4.84e-26)]_4_\
[3(1.12e-45)]_48
Gallus_FDPS 2.36e-102 98_[1(9.22e-39)]_94_[2(1.38e-29)]_4_\
[3(1.76e-47)]_48
tr|A0A0U2D675|A0A0U2D675 3.50e-111 156_[1(1.40e-39)]_94_[2(7.92e-38)]_\
4_[3(1.56e-47)]_48
tr|Q9ZPJ3|Q9ZPJ3_ARTAN 1.38e-101 75_[1(9.68e-43)]_93_[2(7.94e-27)]_4_\
[3(2.19e-45)]_48
sp|Q09152|FPPS1_ARATH 9.68e-105 116_[1(6.24e-46)]_93_[2(3.34e-26)]_\
4_[3(3.63e-46)]_48
tr|D6WSE7|D6WSE7_TRICA 9.39e-01 169
tr|Q56CY8|Q56CY8_ANTGR 2.01e-117 108_[1(8.68e-40)]_95_[2(6.67e-40)]_\
4_[3(2.29e-51)]_48
tr|J9QQQ8|J9QQQ8_TETFS 4.77e-98 165_[1(5.69e-36)]_94_[2(5.90e-33)]_\
2_[3(8.34e-43)]_51
tr|Q58GE9|Q58GE9_IPSPI 2.63e-114 165_[1(9.79e-40)]_94_[2(3.45e-36)]_\
4_[3(3.44e-52)]_47
tr|Q56CY7|Q56CY7_9CUCU 2.91e-118 159_[1(2.88e-40)]_95_[2(7.46e-37)]_\
4_[3(5.79e-55)]_48
ORFfromAK386356.1 2.82e-108 158_[1(1.91e-37)]_94_[2(1.85e-36)]_\
4_[3(4.12e-48)]_48
tr|Q1XAB0|Q1XAB0_CHOFU 1.57e-108 99_[1(2.62e-35)]_94_[2(7.92e-38)]_4_\
[3(6.36e-49)]_48
tr|A0A075D844|A0A075D844 6.21e-111 155_[1(1.37e-37)]_94_[2(1.68e-38)]_\
4_[3(1.35e-48)]_48
tr|F4WXE7|F4WXE7_ACREC 4.84e-101 94_[1(2.90e-35)]_40_[1(7.96e-05)]_\
14_[2(1.39e-31)]_2_[3(1.23e-47)]_48
tr|E2B2E9|E2B2E9_HARSA 2.54e-105 86_[1(1.09e-33)]_95_[2(3.24e-33)]_4_\
[3(7.20e-52)]_48
tr|B1PI49|B1PI49_MYZPE 2.01e-113 124_[1(7.22e-41)]_95_[2(1.43e-36)]_\
4_[3(1.19e-49)]_48
tr|E0VQL3|E0VQL3_PEDHC 1.40e-109 74_[1(9.87e-38)]_94_[2(9.71e-37)]_4_\
[3(1.53e-48)]_48
tr|B0VZA8|B0VZA8_CULQU 3.93e-107 114_[1(6.81e-40)]_91_[2(5.45e-32)]_\
4_[3(8.19e-49)]_48
tr|Q7KN61|Q7KN61_DROME 8.94e-108 153_[1(8.20e-41)]_91_[2(1.29e-32)]_\
4_[3(4.65e-48)]_48
WP_001408463.1 6.21e-07 65_[1(2.08e-05)]_93_[2(7.31e-07)]_5_\
[3(1.11e-05)]_13
--------------------------------------------------------------------------------
********************************************************************************
********************************************************************************
Stopped because requested number of motifs (3) found.
********************************************************************************
CPU: node152
********************************************************************************
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Views: 518 Downloads: 32
Created: 16th May 2022 at 12:17
Last updated: 6th Nov 2024 at 15:26
AttributionsNone
Version History
Version 1 (earliest) Created 16th May 2022 at 12:17 by Marko Petek
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Related items
Advanced People list for this Data file with search and filtering
https://orcid.org/0000-0003-3644-7827PhD in Biotechnology, Research Associate at Department of Biotechnology and Systems Biology, National Institute of Biology
Advanced Programmes list for this Data file with search and filtering
National Institute of Biology, Department of Biotechnology and Systems Biology projects
Projects: HYp - Spatiotemporal analysis of hypersensitive response to Potato virus Y in potato, pISA-tree, MOA - Multiomics analysis of potato response to Potato virus Y (PVY) infection, SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture, INDIE - Biotechnological production of sustainable indole, _p_stRT, ADAPT - Accelerated Development of multiple-stress tolerAnt PoTato, _p_RNAinVAL, tst, tst2, Playground
Web page: http://www.nib.si/eng/index.php/departments/department-of-biotechnology-and-systems-biology
Advanced Projects list for this Data file with search and filtering
SUSPHIRE aims to provide a sustainable, low-cost biomanufacturing platform for the commercial production of insect pheromones.
Synthetic biology data management spreadsheet: https://fairdomhub.org/data_files/6036
Programme: NIBSys
Public web page: http://susphire.info/susphireproject/
Start date: 1st Apr 2018
End date: 30th Sep 2021
Advanced Investigations list for this Data file with search and filtering
Short Name: T31_mealybug Title: Mealybug genome and transcriptome analyses Description: Searching for enzymes involved in the mealybug pheromone biosynthesis pathways. These pheromones are known to be released by virgin females. Phenodata: ./phenodata_20190523.txt Featuredata: Principal investigator: Heribert Warzecha, Špela Baebler License: Creative Commons Attribution 4.0 Sharing permission: Private Upload to FAIRDOMHub: Yes
Submitter: Marko Petek
Studies: Investigation files, _S_P3_expressionEcoli, _S_P4_AdPathGenes, _S_P4_Pcitri_IsoSeq, _S_P4_Pcitri_genome, _S_P4_Pcitri_genome_extSamples, _S_P4_Pcitri_tr1, _S_P4_Pcitri_tr1tr2combo, _S_P4_Pcitri_tr2, _S_P4_cand_all, _S_P4_cand_genomic
Assays: _A_01-CoEXpNetViz_tr2-coexpr, _A_01_NGI-IsoSeq, _A_01_RNAseq-CLC, _A_01_assembly2-rnaSPAdes, _A_01_mapToGenomeAll-STAR, _A_01_renameFASTA-Bioinfo, _A_02-CoEXpNetViz_gen-coexpr, _A_02_CDHIT-Bioinfo, _A_02_assembly2-IPS, _A_02_cDNAcupcake-dry, _A_02_limma-R, _A_02_mapToGenomeAll_limma-R, _A_03-IPS, _A_03_CDHIT2-Bioinfo, _A_03_limma_min50counts-R, _A_03_mapAs2ToGenome-STAR, _A_04_limma_min10counts-R, _A_04_mapIllumina-STAR, _A_04_mapReadsToAs2-STAR, _A_05_As2_tr_limmaDE-R, _A_05_DE_limma-R, _A_05_assembly1-rnaSPAdes, _A_06_assembly1-IPS, _A_07_mapAs1ToGenome-STAR, _A_08_mapReadsToAs1-STAR, _A_09_As1_tr_limmaDE-R, _A_C98F-EcoliExpr, _A_IDIsearch-Bioinfo, _A_IPS-bioinfo, _A_MAST-bioinfo, _A_MEME-bioinfo, _A_MSA-bioinfo, _A_MeUppS-EcoliExpr, _A_Node14610-EcoliExpr, _A_Node14610DmTP-EcoliExpr, _A_OtherMealybugCandidates-Alignment, _A_Pc1599-EcoliExpr, _A_Pc23180-EcoliExpr, _A_Pc2704-EcoliExpr, _A_Pc32607-EcoliExpr, _A_Pc7366II-EcoliExpr, _A_PcCis24-EcoliExpr, _A_Strep_CLDS-bioinfo, _A_TPS_phy-bioinfo, _A_Terzyme-bioinfo, _A_Trans1153-EcoliExpr, _A_Trans2-EcoliExpr, _A_Trans39-EcoliExpr, _A_Trans57-EcoliExpr, _A_Trans64-EcoliExpr, _A_Trans94-EcoliExpr, _A_candidatemining-bioinfo, _A_g14825_recon-bioinfo, _A_smallIDSsubunit-motifs, _I_T31_mealybug-files, _S_P3_expressionEcoli-files, _S_P4_AdPathGenes-files, _S_P4_Pcitri_IsoSeq-files, _S_P4_Pcitri_genome-files, _S_P4_Pcitri_genome_extSamples-files, _S_P4_Pcitri_tr1-files, _S_P4_Pcitri_tr1tr2combo-files, _S_P4_Pcitri_tr2-files, _S_P4_cand_all-files, _S_P4_cand_genomic-files
Advanced Studies list for this Data file with search and filtering
Short Name: P4_genomes Title: Mealybug genome queries for pheromone biosynthesis genes Description: Survey of the available mealybug genomes for potential sex pheromone biosynthesis genes Raw Data: Principal investigator: Špela Baebler License: Creative Commons Attribution 4.0 Sharing permission: Private Upload to FAIRDOMHub: Yes
Submitter: Marko Petek
Investigation: _I_T31_mealybug
Assays: _A_IPS-bioinfo, _A_MAST-bioinfo, _A_MEME-bioinfo, _A_TPS_phy-bioinfo, _A_Terzyme-bioinfo, _A_g14825_recon-bioinfo, _S_P4_cand_genomic-files
Advanced Assays list for this Data file with search and filtering
Short Name: MEME-bioinfo Assay Class: DRY Assay Type: bioinfo Title: Finding motifs in candidate protein sequences using MEME Description: Using MEME software to look for motifs in proteins that resemble those found in plants producing similar compounds to mealybug sex pheromones pISA Assay creation date: 2018-11-23 pISA Assay creator: MPE Phenodata: None Featuredata: Data:
Submitter: Marko Petek
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_T31_mealybug
Study: _S_P4_cand_genomic
