output/quast/Serratia/transposed_report.txt

Version 1

All statistics are based on contigs of size >= 200 bp, unless otherwise noted (e.g., "# contigs (>= 0 bp)" and "Total length (>= 0 bp)" include all contigs).

Assembly  # contigs (>= 0 bp)  # contigs (>= 1000 bp)  # contigs (>= 5000 bp)  # contigs (>= 10000 bp)  # contigs (>= 25000 bp)  # contigs (>= 50000 bp)  Total length (>= 0 bp)  Total length (>= 1000 bp)  Total length (>= 5000 bp)  Total length (>= 10000 bp)  Total length (>= 25000 bp)  Total length (>= 50000 bp)  # contigs  Largest contig  Total length  GC (%)  N50     N75    L50  L75  # total reads  # left    # right   Mapped (%)  Properly paired (%)  Avg. coverage depth  Coverage >= 1x (%)  # N's per 100 kbp  Complete BUSCO (%)  Partial BUSCO (%)  # predicted genes (unique)  # predicted genes (>= 0 bp)  # predicted genes (>= 300 bp)  # predicted genes (>= 1500 bp)  # predicted genes (>= 3000 bp)  # predicted rRNA genes
spades    937                  116                     39                      33                       31                       24                       5558245                 5097133                    4950764                    4903760                     4869458                     4623497                     933        490052          5557743       59.46   223393  88019  9    18   118812031      59370898  59370898  99.72       99.07                3188                 100.0               0.00               99.32               0.00               5268                        5024 + 244 part              4502 + 222 part                620 + 0 part                    61 + 0 part                     7 + 3 part