output/quast/Enterococcus/report.txt

Version 1

All statistics are based on contigs of size >= 200 bp, unless otherwise noted (e.g., "# contigs (>= 0 bp)" and "Total length (>= 0 bp)" include all contigs).

Assembly                        spades        
# contigs (>= 0 bp)             321           
# contigs (>= 1000 bp)          180           
# contigs (>= 5000 bp)          106           
# contigs (>= 10000 bp)         84            
# contigs (>= 25000 bp)         36            
# contigs (>= 50000 bp)         13            
Total length (>= 0 bp)          3329954       
Total length (>= 1000 bp)       3253815       
Total length (>= 5000 bp)       3099388       
Total length (>= 10000 bp)      2941721       
Total length (>= 25000 bp)      2148681       
Total length (>= 50000 bp)      1309856       
# contigs                       319           
Largest contig                  167507        
Total length                    3329701       
GC (%)                          42.93         
N50                             41366         
N75                             18092         
L50                             21            
L75                             53            
# total reads                   42014317      
# left                          21002102      
# right                         21002102      
Mapped (%)                      99.75         
Properly paired (%)             99.25         
Avg. coverage depth             1883          
Coverage >= 1x (%)              100.0         
# N's per 100 kbp               0.00          
Complete BUSCO (%)              93.24         
Partial BUSCO (%)               0.68          
# predicted genes (unique)      2255          
# predicted genes (>= 0 bp)     2240 + 15 part
# predicted genes (>= 300 bp)   2172 + 14 part
# predicted genes (>= 1500 bp)  467 + 1 part  
# predicted genes (>= 3000 bp)  54 + 1 part   
# predicted rRNA genes          4 + 1 part