output/quast/Serratia/report.txt

Version 1

All statistics are based on contigs of size >= 200 bp, unless otherwise noted (e.g., "# contigs (>= 0 bp)" and "Total length (>= 0 bp)" include all contigs).

Assembly                        spades         
# contigs (>= 0 bp)             937            
# contigs (>= 1000 bp)          116            
# contigs (>= 5000 bp)          39             
# contigs (>= 10000 bp)         33             
# contigs (>= 25000 bp)         31             
# contigs (>= 50000 bp)         24             
Total length (>= 0 bp)          5558245        
Total length (>= 1000 bp)       5097133        
Total length (>= 5000 bp)       4950764        
Total length (>= 10000 bp)      4903760        
Total length (>= 25000 bp)      4869458        
Total length (>= 50000 bp)      4623497        
# contigs                       933            
Largest contig                  490052         
Total length                    5557743        
GC (%)                          59.46          
N50                             223393         
N75                             88019          
L50                             9              
L75                             18             
# total reads                   118812031      
# left                          59370898       
# right                         59370898       
Mapped (%)                      99.72          
Properly paired (%)             99.07          
Avg. coverage depth             3188           
Coverage >= 1x (%)              100.0          
# N's per 100 kbp               0.00           
Complete BUSCO (%)              99.32          
Partial BUSCO (%)               0.00           
# predicted genes (unique)      5268           
# predicted genes (>= 0 bp)     5024 + 244 part
# predicted genes (>= 300 bp)   4502 + 222 part
# predicted genes (>= 1500 bp)  620 + 0 part   
# predicted genes (>= 3000 bp)  61 + 0 part    
# predicted rRNA genes          7 + 3 part