output/quast/Serratia/report.tsv
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_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

SEEK ID: https://fairdomhub.org/data_files/4788?version=1

Filename: output/quast/Serratia/report.tsv

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Assembly	spades
# contigs (>= 0 bp)	937
# contigs (>= 1000 bp)	116
# contigs (>= 5000 bp)	39
# contigs (>= 10000 bp)	33
# contigs (>= 25000 bp)	31
# contigs (>= 50000 bp)	24
Total length (>= 0 bp)	5558245
Total length (>= 1000 bp)	5097133
Total length (>= 5000 bp)	4950764
Total length (>= 10000 bp)	4903760
Total length (>= 25000 bp)	4869458
Total length (>= 50000 bp)	4623497
# contigs	933
Largest contig	490052
Total length	5557743
GC (%)	59.46
N50	223393
N75	88019
L50	9
L75	18
# total reads	118812031
# left	59370898
# right	59370898
Mapped (%)	99.72
Properly paired (%)	99.07
Avg. coverage depth	3188
Coverage >= 1x (%)	100.0
# N's per 100 kbp	0.00
Complete BUSCO (%)	99.32
Partial BUSCO (%)	0.00
# predicted genes (unique)	5268
# predicted genes (>= 0 bp)	5024 + 244 part
# predicted genes (>= 300 bp)	4502 + 222 part
# predicted genes (>= 1500 bp)	620 + 0 part
# predicted genes (>= 3000 bp)	61 + 0 part
# predicted rRNA genes	7 + 3 part

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