Assays

What is an Assay?

10 Assays visible to you, out of a total of 10

Proteomics

MOA - Multiomics analysis of potato response to Potato virus Y (PVY) infection

No description specified

Submitter: Ziva Ramsak

Assay type: Protein Quantification

Technology type: Orbitrap Velos

Investigation: MOA - Multiomics analysis of potato response to...

Study: MOA2010-05

Organisms: Solanum tuberosum, Potato virus Y

SOPs: No SOPs

Data files: MOA2010-05_5_proteomics_Orbitrap-MaxQuant, MOA2010-05_5_proteomics_Orbitrap-MaxQuant_logFC, MOA2010-05_5_proteomics_Orbitrap-MaxQuant_peptides, MOA2010-05_5_proteomics_Orbitrap-SpectralCounts, MOA2010-05_5_proteomics_Orbitrap-SpectralCounts..., MOA2010-05_5_proteomics_Orbitrap-SpectralCounts..., MOA_Multiomics-Analysis_Phenodata-n-MIAPPE

Snapshots: No snapshots

Created: 4th Mar 2019 at 15:23, Last updated: 4th Mar 2019 at 16:51

Degradomics

MOA - Multiomics analysis of potato response to Potato virus Y (PVY) infection

No description specified

Submitter: Ziva Ramsak

Assay type: Degradome-Seq

Technology type: Next generation sequencing

Investigation: MOA - Multiomics analysis of potato response to...

Study: MOA2010-05

Organisms: Solanum tuberosum, Potato virus Y

SOPs: No SOPs

Data files: MOA2010-05_4_degradomics_Degradome-Seq_GEO, MOA2010-05_4_degradomics_Degradome-Seq_targets-..., MOA2010-05_4_degradomics_Degradome-Seq_targets-..., MOA_Multiomics-Analysis_Phenodata-n-MIAPPE

Snapshots: No snapshots

Created: 18th Feb 2019 at 18:58, Last updated: 4th Mar 2019 at 16:51

sRNAomics (bioinformatics)

MOA - Multiomics analysis of potato response to Potato virus Y (PVY) infection

No description specified

Submitter: Ziva Ramsak

Assay type: Bioinformatics

Technology type: Interactions

Investigation: MOA - Multiomics analysis of potato response to...

Study: MOA2010-05

Organisms: Solanum tuberosum, Potato virus Y

SOPs: No SOPs

Data files: MOA2010-05_3C_sRNAomics_bioinformatics_PHAS-loci, MOA2010-05_3C_sRNAomics_bioinformatics_miRNA-novel, MOA2010-05_3C_sRNAomics_bioinformatics_sRNA-tar..., MOA2010-05_3C_sRNAomics_bioinformatics_sRNA-tar..., MOA2010-05_3C_sRNAomics_bioinformatics_sRNA-tar..., MOA_Multiomics-Analysis_Phenodata-n-MIAPPE

Snapshots: No snapshots

Created: 18th Feb 2019 at 18:56, Last updated: 4th Mar 2019 at 16:51

sRNAomics (qPCR)

MOA - Multiomics analysis of potato response to Potato virus Y (PVY) infection

No description specified

Submitter: Ziva Ramsak

Assay type: Q_PCR

Technology type: qPCR

Investigation: MOA - Multiomics analysis of potato response to...

Study: MOA2010-05

Organisms: Solanum tuberosum, Potato virus Y

SOPs: No SOPs

Data files: MOA2010-05_3_sRNAomics_qPCR, MOA2010-05_3_sRNAomics_qPCR_MIQE, MOA_Multiomics-Analysis_Phenodata-n-MIAPPE

Snapshots: No snapshots

Created: 18th Feb 2019 at 18:55, Last updated: 4th Mar 2019 at 16:51

sRNAomics (sRNA-Seq)

MOA - Multiomics analysis of potato response to Potato virus Y (PVY) infection

No description specified

Submitter: Ziva Ramsak

Assay type: MicroRNA Profiling

Technology type: Next generation sequencing

Investigation: MOA - Multiomics analysis of potato response to...

Study: MOA2010-05

Organisms: Solanum tuberosum, Potato virus Y

SOPs: No SOPs

Snapshots: No snapshots

Created: 18th Feb 2019 at 18:54, Last updated: 4th Mar 2019 at 16:51

Transcriptomics (qPCR)

MOA - Multiomics analysis of potato response to Potato virus Y (PVY) infection

No description specified

Submitter: Ziva Ramsak

Assay type: Q_PCR

Technology type: qPCR

Investigation: MOA - Multiomics analysis of potato response to...

Study: MOA2010-05

Organisms: Solanum tuberosum, Potato virus Y

SOPs: No SOPs

Data files: MOA2010-05_2_transcriptomics_qPCR, MOA2010-05_2_transcriptomics_qPCR_MIQE, MOA_Multiomics-Analysis_Phenodata-n-MIAPPE

Snapshots: No snapshots

Created: 18th Feb 2019 at 18:52, Last updated: 4th Mar 2019 at 16:50

Transcriptomics (microarrays)

MOA - Multiomics analysis of potato response to Potato virus Y (PVY) infection

No description specified

Submitter: Ziva Ramsak

Assay type: Gene Expression Profiling

Technology type: Custom Array

Investigation: MOA - Multiomics analysis of potato response to...

Study: MOA2010-05

Organisms: Solanum tuberosum, Potato virus Y

SOPs: No SOPs

Data files: MOA2010-05_2_transcriptomics_microarrays_GEO, MOA2010-05_2_transcriptomics_microarrays_R-code, MOA2010-05_2_transcriptomics_microarrays_R-code..., MOA2010-05_2_transcriptomics_microarrays_logFC, MOA2010-05_2_transcriptomics_microarrays_normal..., MOA_Multiomics-Analysis_Phenodata-n-MIAPPE

Snapshots: No snapshots

Created: 18th Feb 2019 at 18:51, Last updated: 4th Mar 2019 at 16:50

Pathogen abundance

MOA - Multiomics analysis of potato response to Potato virus Y (PVY) infection

No description specified

Submitter: Ziva Ramsak

Assay type: Q_PCR

Technology type: qPCR

Investigation: MOA - Multiomics analysis of potato response to...

Study: MOA2010-05

Organisms: Solanum tuberosum, Potato virus Y

SOPs: No SOPs

Data files: MOA2010-05_1C_pathogen-abundance_qPCR, MOA_Multiomics-Analysis_Phenodata-n-MIAPPE

Snapshots: No snapshots

Created: 18th Feb 2019 at 18:49, Last updated: 4th Mar 2019 at 16:50

Photosynthetic activity

MOA - Multiomics analysis of potato response to Potato virus Y (PVY) infection

No description specified

Submitter: Ziva Ramsak

Assay type: Phenotype observation

Technology type: Leaf Chamber Fluorometer

Investigation: MOA - Multiomics analysis of potato response to...

Study: MOA2010-05

Organisms: Solanum tuberosum, Potato virus Y

SOPs: No SOPs

Data files: MOA2010-05_1B_photosynthetic-activity, MOA2010-05_1B_photosynthetic-activity_LM, MOA_Multiomics-Analysis_Phenodata-n-MIAPPE

Snapshots: No snapshots

Created: 18th Feb 2019 at 18:47, Last updated: 4th Mar 2019 at 16:50

Disease symptoms

MOA - Multiomics analysis of potato response to Potato virus Y (PVY) infection

Description of observed phenotypic variables in the MOA investigation.

Submitter: Ziva Ramsak

Assay type: Phenotype observation

Technology type: Imaging

Investigation: MOA - Multiomics analysis of potato response to...

Study: MOA2010-05

Organisms: Solanum tuberosum, Potato virus Y

SOPs: No SOPs

Data files: MOA2010-05_1A_disease-symptoms, MOA2010-05_1A_disease-symptoms-images, MOA_Multiomics-Analysis_Phenodata-n-MIAPPE

Snapshots: Snapshot 1

Created: 18th Feb 2019 at 18:43, Last updated: 4th Mar 2019 at 16:49

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