Assays

What is an Assay?

8 Assays visible to you, out of a total of 8

Proteomic data

EbN1 Systems Biology

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No description specified

Submitter: Lars Wöhlbrand

Assay type: Protein Identification

Technology type: Liquid Chromatography-tandom Mass Spectrometry

Investigation: Systems biology investigation of aromatic compo...

Study: Experimental multi-OMICS

Organisms: No organisms

SOPs: SOP – Protein preparation, nanoLC-MS/MS analyse...

Data files: Detailed peptide data for identified proteins, Protein identification data

Snapshots: No snapshots

Created: 3rd Jun 2022 at 09:03, Last updated: 11th Apr 2024 at 08:15

CoA LC/MS Data

EbN1 Systems Biology

No description specified

Submitter: Meina Neumann-Schaal

Assay type: Metabolite Profiling

Technology type: Liquid Chromatography Mass Spectrometry

Investigation: Systems biology investigation of aromatic compo...

Study: Experimental multi-OMICS

Organisms: Aromatoleum aromaticum

SOPs: SOP_analysis_CoA-esters, SOP_data_evalutation_CoA-esters, SOP_extraction_CoA-esters

Data files: CoA LC/MS Data Sample Identification, NO3_MS_CoA_Data, O2_MS_CoA_Data, Results - CoA-esters via LC-MS

Snapshots: No snapshots

Created: 20th Apr 2022 at 12:57, Last updated: 13th Oct 2022 at 13:56

non-volatile metabolites GC/MS

EbN1 Systems Biology

No description specified

Submitter: Sarah Kirstein

Assay type: Experimental Assay Type

Technology type: Gas Chromatography Mass Spectrometry

Investigation: Systems biology investigation of aromatic compo...

Study: Experimental multi-OMICS

Organisms: No organisms

SOPs: SOP - Analysis of non-volatile, small, polar me..., SOP - Data evaluation of non-volatile, small, p..., SOP - Extraction of non-volatile, small, polar ...

Data files: NO3_MS_small_metabolites_Data, Non-volatile, small, polar metabolites´GC/MS da..., O2_MS_small_metabolites_Data, Results - Non-volatile, small, polar metabolite...

Snapshots: No snapshots

Created: 25th Apr 2022 at 11:33, Last updated: 13th Oct 2022 at 13:54

Cultivation for multi-OMICS

EbN1 Systems Biology

Harvest optical densites and methods of transcriptom, proteom and metabolom samples for all tested substrat conditions.

Submitter: Meina Neumann-Schaal

Assay type: Experimental Assay Type

Technology type: Cultivation experiment

Investigation: Systems biology investigation of aromatic compo...

Study: Experimental multi-OMICS

Organisms: No organisms

SOPs: SOP – Substrate adaptation, cultivation and har...

Data files: No Data files

Snapshots: No snapshots

Created: 20th Apr 2022 at 13:02, Last updated: 13th Oct 2022 at 07:48

Metabolic modeling of EbN1

EbN1 Systems Biology

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All flux balance analyses of the stoichiometric model

Submitter: Julia Koblitz

Biological problem addressed: Modelling analysis

Investigation: Systems biology investigation of aromatic compo...

Study: Metabolic Modelling

Organisms: Aromatoleum aromaticum : EbN1T (wild-type / wild-type)

Models: EbN1 stoichiometric model iAA835 (Metano), EbN1 stoichiometric model iAA835 (SBML)

SOPs: No SOPs

Data files: Model | Biomass composition, Model | Flux balance analysis (FBA), Model | Simulation parameters and results

Snapshots: No snapshots

Created: 15th Jul 2022 at 06:32, Last updated: 13th Oct 2022 at 07:44

Scenario files for Metano metabolic modeling

EbN1 Systems Biology

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All files for metabolic modeling using the Metano toolbox, including the scenarios and flux balance analyses.

Submitter: Julia Koblitz

Biological problem addressed: Model Analysis Type

Investigation: Systems biology investigation of aromatic compo...

Study: Metabolic Modelling

Organisms: No organisms

Models: EbN1 stoichiometric model iAA835 (Metano)

SOPs: No SOPs

Data files: Model - Scenario - 3-HBz aerobic, Model - Scenario - 3-HBz anaerobic, Model - Scenario - 4HPP aerobic, Model - Scenario - 4HPP anaerobic, Model - Scenario - Acetate aerobic, Model - Scenario - Acetate anaerobic, Model - Scenario - Benzoate aerobic, Model - Scenario - Benzoate anaerobic, Model - Scenario - Phenylalanine aerobic, Model - Scenario - Phenylalanine anaerobic

Snapshots: No snapshots

Created: 15th Jul 2022 at 06:07, Last updated: 13th Oct 2022 at 07:43

Transcriptomic data

EbN1 Systems Biology

No description specified

Submitter: Patrick Becker

Assay type: Transcriptomics

Technology type: Rna-seq

Investigation: Systems biology investigation of aromatic compo...

Study: Experimental multi-OMICS

Organisms: Aromatoleum aromaticum : EbN1T (wild-type / wild-type)

SOPs: No SOPs

Data files: EbN1 fastq 3HBz, EbN1 fastq 4HPP, EbN1 fastq Ac, EbN1 fastq Bz, EbN1 fastq Phe

Snapshots: No snapshots

Created: 6th May 2022 at 10:40, Last updated: 13th Oct 2022 at 07:29

EbN1 Genome re-annotation

EbN1 Systems Biology

No description specified

Submitter: Patrick Becker

Assay type: Genomics

Technology type: Technology Type

Investigation: Systems biology investigation of aromatic compo...

Study: Genome re-annotation

Organisms: Aromatoleum aromaticum : EbN1T (wild-type / wild-type)

SOPs: No SOPs

Data files: Aromatoleum aromaticum EbN1 chromosome, complet..., Aromatoleum aromaticum EbN1 plasmid1, complete ..., Aromatoleum aromaticum EbN1 plasmid2, complete ...

Snapshots: No snapshots

Created: 23rd Jun 2022 at 14:17, Last updated: 13th Oct 2022 at 07:29

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