Sample types
What is a Sample type?
A patient sample represents a human participant enrolled in a study. It serves as the source for clinical information and biological material collected to investigate health, disease, or treatment effects.
UID (String) *, Name (String) , Scientist (String) , Age (String) , Sex (String) , DiseaseReference (String) , DiseaseStage (String) , Ethnicity (String) , Race (String) , SubjectLocation (String) , Notes (String)
Not specified
A patient visit record represents a specific encounter or collection event for a study participant. It provides temporal and contextual information linking biological samples or data files to a particular time point, condition, or intervention.
UID (String) *, Name (String) , Parent (Registered Sample - PAT - EI_Fc-Engineered) , Scientist (String) , Type (String) , Notes (String)
Not specified
A tissue sample represents a portion of biological material collected from an organism. It serves as the source for downstream molecular, cellular, or histological analyses.
UID (String) *, Name (String) , Scientist (String) , Parent (String) , Type (String) , Notes (String)
Not specified
An antibody sample contains purified immune proteins that specifically recognize and bind to target molecules. These samples are used in experimental procedures that detect, label, or isolate biological components. Each antibody is defined by its binding specificity, source, and production method.
UID (String) *, Name (String) , Catalog# (String) , Vendor (String) , Analyte (String) , Clone (String) , Fc-variant (String) , AminoAcidMutations (String) , Description (String) , Protocol (URI) , Scientist (String) , Notes (String)
Not specified
A bacteria sample represents a microbial strain used in an experiment, either as an infectious agent or as material isolated from another biological source. It serves as a basis for studying host interactions, gene expression, or microbial composition.
UID (String) *, Name (String) , Species (String) , Strain (String) , TaxonomyID (String) , Phenotype (String) , Morphology (String) , GramStaining (String) , Scientist (String) , Notes (String)
Not specified
A Luminex data file contains multiplexed fluorescence intensity measurements generated by bead-based assays. It represents the digital output used to quantify multiple proteins, cytokines, or analytes simultaneously. Typical file types: .csv, .xlsx, .xml
UID (String) *, Name (String) , File_PrimaryData (String) , Link_PrimaryData (URI) , Checksum_PrimaryData (String) , Checksum_PrimaryType (String) , Parent (Registered Sample - TIS - EI_Fc-Engineered) , Scientist (String) , SampleCreationDate (String) , Protocol (URI) , Panel (String) , Analyte (String) , Vendor (String) , Product# (String) , Lot# (String) , BeadFluorescence (String) , MeasurementWavelength (String) , MeasurementWavelengthUnits (String) , Instrument (String) , Software (String) , LuminexDesign (String) , Notes (String)
Not specified
A glycosylation assay data file records the presence or structure of carbohydrate modifications on proteins or lipids. It represents the analytical output used to study post-translational modifications or molecular stability. Typical file types: .csv, .xlsx, .raw
UID (String) *, Name (String) , File_PrimaryData (String) , Link_PrimaryData (URI) , Checksum_PrimaryData (String) , Checksum_PrimaryType (String) , Parent (String) , Scientist (String) , SampleCreationDate (String) , Protocol (URI) , Type (String) , Procedure (String) , PurificationKit (String) , PurificationKit_Vendor (String) , PurificationKit_Catalog# (String) , Filter (String) , Filter_Vendor (String) , Filter_Catalog# (String) , Analyte (String) , AnalyteVolume (String) , AnalyteVolumeUnits (String) , DigestiveEnzyme (String) , DigestiveEnzyme_Vendor (String) , DigestiveEnzyme_Catalog# (String) , DigestiveTemperature (String) , DigestiveTemperatureUnits (String) , DomainSelectionTarget (String) , DomainBeadSelector (String) , Bead_Vendor (String) , Bead_Catalog# (String) , SelectionTemperature (String) , SelectionTemperatureUnits (String) , IsolationTarget (String) , IsolationKit (String) , IsolationKit_Vendor (String) , IsolationKit_Catalog# (String) , CaptureKit (String) , CaptureKit_Vendor (String) , CaptureKit_Catalog# (String) , Label (String) , LabellingKit (String) , LabellingKit_Vendor (String) , LabellingKit_Catalog# (String) , AnalysisMethod (String) , Ladder (String) , Ladder_Vendor (String) , Ladder_Catalog# (String) , Analyzer (String) , AnalyzerSoftware (String)
Not specified
An ELISA assay data file contains absorbance or fluorescence readings from enzyme-linked immunosorbent assays. It represents the processed output used to quantify target proteins, antigens, or antibodies. Typical file types: .csv, .xlsx
UID (String) *, Name (String) , File_PrimaryData (String) , Link_PrimaryData (URI) , Checksum_PrimaryData (String) , Checksum_PrimaryType (String) , Parent (String) , Scientist (String) , SampleCreationDate (String) , Protocol (URI) , Type (String) , Analyte (String) , AnalyteVolume (String) , AnalyteVolumeUnits (String) , Analyte_Vendor (String) , Analyte_Catalog# (String) , AnalyteProcedure (String) , Plate (String) , Plate_Vendor (String) , Plate_Catalog# (String) , PlateWash (String) , PlateBlocker (String) , PlateBlockerProcedure (String) , NegativeControl (String) , NegativeControl_Vendor (String) , NegativeControl_Catalog# (String) , Detector (String) , Detector_Vendor (String) , Detector_Catalog# (String) , ReactionStopper (String) , Instrument (String) , Absorbance (String) , AbsorbanceUnits (String)
Not specified
A bacterial survivability restriction assay data file contains measurements of bacterial viability under defined conditions. It represents the processed output used to assess antimicrobial resistance or stress responses. Typical file types: .csv, .xlsx
UID (String) *, Name (String) , File_PrimaryData (String) , Link_PrimaryData (URI) , Checksum_PrimaryData (String) , Checksum_PrimaryType (String) , Parent (String) , Scientist (String) , SampleCreationDate (String) , Protocol (URI) , Type (String) , LightEmission_Plasmid (String) , LightEmission_Reporter (String) , BacterialStrain (String) , MultiplicityOfInfection (String) , InfectedCells (String) , Cells_Vendor (String) , Cells_Catalog# (String) , NumberInfectedCells (String) , ExcitationWavelength (String) , EmissionWavelength (String) , ReadingIntervals (String) , Analyzer (String) , Analyzer_Vendor (String) , Dilution (String)
Not specified
An antibody dependent neutrophil phagocytosis data file records quantitative measurements of antibody-mediated uptake by neutrophils. It represents the processed output used to evaluate innate immune activation. Typical file types: .csv, .xlsx
UID (String) *, Name (String) , File_PrimaryData (String) , Link_PrimaryData (URI) , Checksum_PrimaryData (String) , Checksum_PrimaryType (String) , Parent (String) , Scientist (String) , SampleCreationDate (String) , Protocol (URI) , Bead_Fluorophore (String) , Bead_Vendor (String) , Bead_Catalog# (String) , Bead_coating (String) , Leukocytes (String) , Analyzer (String) , Analyzer_Vendor (String) , Fixed (String) , Fixative (String) , Staining_Antibody (String) , Staining_Antibody_Vendor (String) , Staining_Antibody_Fluorophore (String)
Not specified
An antibody dependent NK cell activation data file contains fluorescence or luminescence signals measuring natural killer cell activation through antibody engagement. It represents the output used to evaluate antibody-dependent cellular cytotoxicity. Typical file types: .csv, .xlsx
UID (String) *, Name (String) , File_PrimaryData (String) , Link_PrimaryData (URI) , Checksum_PrimaryData (String) , Checksum_PrimaryType (String) , Parent (String) , Scientist (String) , SampleCreationDate (String) , Protocol (URI) , ELISAplate (String) , ELISAplate_Vendor (String) , ELISAplate_Catalog# (String) , Antigen (String) , Blocking_solution (String) , NKC_Name (String) , AntiCD107a_Name (String) , AntiCD107a_Ab_Vendor (String) , AntiCD107a_Ab_Fluorophore (String) , AntiCD107a_Ab_Catalog# (String) , CD3_Name (String) , CD3_Ab_Vendor (String) , CD3_Ab_Fluorophore (String) , CD3_Ab_Catalog# (String) , CD56_Name (String) , CD56_Ab_Vendor (String) , CD56_Ab_Fluorophore (String) , CD56_Ab_Catalog# (String) , CD16_Name (String) , CD16_Ab_Vendor (String) , CD16_Ab_Fluorophore (String) , CD16_Ab_Catalog# (String) , MIP-1B_Name (String) , MIP-1B_Ab_Vendor (String) , MIP-1B_Ab_Fluorophore (String) , MIP-1B_Ab_Catalog# (String) , INFg_Name (String) , INFg_Ab_Vendor (String) , INFg_Ab_Fluorophore (String) , INFg_Ab_Catalog# (String) , Fixed (String) , Fixative (String) , Analyzer (String) , Analyzer_Vendor (String) , Software (String) , TNFa_Name (String) , TNFa_Ab_Vendor (String) , TNFa_Ab_Fluorophore (String) , TNFa_Ab_Catalog# (String)
Not specified
An antibody dependent cellular phagocytosis data file contains measurements of target cell uptake mediated by antibody opsonization. It represents the digital output used to assess immune cell function and antibody efficacy. Typical file types: .csv, .xlsx
UID (String) *, Name (String) , File_PrimaryData (String) , Link_PrimaryData (URI) , Checksum_PrimaryData (String) , Checksum_PrimaryType (String) , Parent (String) , Scientist (String) , SampleCreationDate (String) , Protocol (URI) , Bead_Fluorophore (String) , Bead_Vendor (String) , Bead_Catalog# (String) , Bead_Coating (String) , PhagocyticCells (String) , PhagocyticCells_Vendor (String) , PhagocyticCells_Catalog# (String) , Analyzer (String) , Analyzer_Vendor (String) , Fixed (String) , Fixative (String) , Software (String)
Not specified
An antibody dependent complement deposition data file records complement activation measured in response to antibody binding. It represents the digital output used to quantify immune complex formation and complement pathway activity. Typical file types: .csv, .xlsx
UID (String) *, Name (String) , File_PrimaryData (String) , Link_PrimaryData (URI) , Checksum_PrimaryData (String) , Checksum_PrimaryType (String) , Parent (String) , Scientist (String) , SampleCreationDate (String) , Protocol (URI) , Bead_Fluorophore (String) , Bead_Vendor (String) , Bead_Catalog# (String) , Bead_coating (String) , Complement (String) , Complement_Vendor (String) , Complement_Catalog# (String) , CD3Ab_Name (String) , C3Ab_Vendor (String) , C3Ab_Catalog# (String) , C3Ab_Fluorophore (String) , Analyzer (String) , Analyzer_Vendor (String)
Not specified
A single cell clustering analysis file contains processed results grouping cells based on shared expression profiles. It represents the interpreted output used to define cellular subpopulations and visualize transcriptomic structure. Each file summarizes results derived from many single-cell inputs (many→1). Typical file types: .csv, .rds, .h5ad
UID (String) *, Name (String) , File_PrimaryData (String) , Link_PrimaryData (URI) , DataType (String) , Protocol (URI) , Parent (String) , Scientist (String) , Lab (String) , Checksum_PrimaryData (String) , Software (String) , Checksum_PrimaryType (String)
Not specified
A chemical sample represents a defined compound or reagent used in an experiment. It may serve as a reactant, control, or treatment substance within an experimental workflow.
UID (String) *, Name (String) , Scientist (String) , Formula (String) , Lab (String) , Form (String) , Manufacturer (String) , ProductNumber (String) , CASNumber (String) , MDLNumber (String) , StorageTempMin (String) , StorageTempMax (String) , StorageTempUnits (String)
Not specified
A DNA sample contains extracted genetic material isolated from a biological source. It serves as input for sequencing, amplification, or other genomic analyses.
UID (String) *, Name (String) , Protocol (URI) , Scientist (String) , Parent (Registered Sample - TIS - EI_Fc-Engineered) , Type (String) , LibraryType (String) , Barcode (String) , BarcodeType (String) , Barcode2 (String) , Barcode2Type (String) , NumPrepCycles (String) , Notes (String) , Lab (String)
Not specified
A single cell expression matrix file contains processed gene expression counts for individual cells. It represents the normalized matrix used for downstream dimensionality reduction, clustering, or differential expression analysis. Each file integrates thousands of single-cell measurements into one dataset (many→1). Typical file types: .h5ad, .mtx, .csv
UID (String) *, Name (String) , File_PrimaryData (String) , Link_PrimaryData (URI) , Scientist (String) , DataType (String) , LibraryPrep (String) , Barcodes (String) , BarcodesDataType (String) , Genes (String) , GenesDataType (String) , Metadata (String) , MetadataDataType (String) , ReferenceGenome (String) , ReferenceGenomeSource (String) , Pipeline (String) , Protocol (URI) , Parent (String) , Lab (String) , Repository (String) , Accession (String) , Checksum_PrimaryData (String) , Checksum_Barcodes (String) , Checksum_Genes (String) , Checksum_Metadata (String) , Checksum_PrimaryType (String)
Not specified
A non-human primate sample originates from an organism closely related to humans within the primate order. These samples are collected to study biological processes that share genetic and physiological similarities with human systems. Each reflects controlled collection and handling specific to the species and study design.
UID (Text) *, Name (Text) , DateOfBirth (Text) , Sex (Text) , Species (Text) , Origin (Text) , Facility (Text) , Notes (Text) , Scientist (Text) , Cohort (Text) , Supplier (Text) , Protocol (URI) , Study (Text) , Funder (Text) , TotalCFU (Text) , LungCFU (Text) , LymphNodeCFU (Text) , StudyDesign (Text) , Link_StudyDesign (URI) , NewGranulomaCount (Text)
Not specified
A patient visit record represents a specific encounter or collection event for a study participant. It provides temporal and contextual information linking biological samples or data files to a particular time point, condition, or intervention.
UID (Text) *, Name (Text) , Scientist (Text) , Protocol (URI) , Type (Text) , Procedure (Text) , Parent (Text) , VisitFacility (Text) , Notes (Text) , SampleCreationDate (Text) , Treatment1 (Text) , Treatment1Type (Text) , Treatment1Route (Text) , Treatment1Dose (Text) , Treatment1DoseUnits (Text) , Treatment2 (Text) , Treatment2Type (Text) , Treatment2Route (Text) , Treatment2Dose (Text) , Treatment2DoseUnits (Text) , Treatment3 (Text) , Treatment3Type (Text) , Treatment3Route (Text) , Treatment3Dose (Text) , Treatment3DoseUnits (Text) , Treatment4 (Text) , Treatment4Type (Text) , Treatment4Route (Text) , Treatment4Dose (Text) , Treatment4DoseUnits (Text) , ExperimentalTimepoint (Text) , Treatment1Parent (Text) , Treatment2Parent (Text)
Not specified
A bacteria sample represents a microbial strain used in an experiment, either as an infectious agent or as material isolated from another biological source. It serves as a basis for studying host interactions, gene expression, or microbial composition.
UID (Text) *, Name (Text) , Scientist (Text) , Species (Text) , Morphology (Text) , Strain (Text) , TaxonomyID (Text) , GramStaining (Text) , Barcode (Text) , Qtag (Text)
Not specified
An antibody sample contains purified immune proteins that specifically recognize and bind to target molecules. These samples are used in experimental procedures that detect, label, or isolate biological components. Each antibody is defined by its binding specificity, source, and production method.
UID (Text) *, Name (Text) , catalog# (Text) , Vendor (Text) , Analyte (Text) , Clone (Text) , RRID (Text) , CatalogLink (URI)
Not specified
A tissue sample represents a portion of biological material collected from an organism. It serves as the source for downstream molecular, cellular, or histological analyses.
UID (Text) *, Name (Text) , Scientist (Text) , SampleCreationDate (Text) , NXProtocol (URI) , GentleMacsProtocol (URI) , CFUProtocol (URI) , Parent (Text) , Type (Text) , Organ (Text) , OrganDetail (Text) , CFU (Text) , CFUUnits (Text) , ArrayNumber (Text) , ExtractionInterval (Text)
Not specified
An imaging data file stores visual or spatial information captured from microscopy, radiography, or other imaging systems. It represents the raw or processed image output used for structural or morphological analysis. Typical file types: .tiff, .jpg, .png, .ome.tiff
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Scientist (Text) , Protocol (URI) , SampleCreationDate (Text) , Parent (Text) , Type (Text) , Notes (Text) , Instrument (Text) , DataType (Text) , TotalLungFDGActivity (Text) , TotalLungFDGActivityUnits (Text)
Not specified
A bacteria sample represents a microbial strain used in an experiment, either as an infectious agent or as material isolated from another biological source. It serves as a basis for studying host interactions, gene expression, or microbial composition.
UID (Text) *, Name (Text) , Scientist (Text) , SampleCreationDate (Text) , Protocol (URI) , Parent (Text) , Notes (Text) , Lab (Text)
Not specified
A single cell expression matrix file contains processed gene expression counts for individual cells. It represents the normalized matrix used for downstream dimensionality reduction, clustering, or differential expression analysis. Each file integrates thousands of single-cell measurements into one dataset (many→1). Typical file types: .h5ad, .mtx, .csv
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , SampleCreationDate (Text) , Scientist (Text) , DataType (Text) , Protocol (URI) , Parent (Text) , Lab (Text) , Repository (Text) , RepositoryID (Text) , ReferenceGenome_Link (URI) , DemultiplexingTool (Text) , ReferenceGenome (Text)
Not specified
A digitally barcoded MTB matrix analysis file contains processed results from barcoded Mycobacterium tuberculosis tracking experiments. It represents summarized abundance or distribution data across bacterial lineages or host conditions. Each file aggregates results from multiple barcoded samples into one matrix (many→1). Typical file types: .csv, .xlsx
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , DataType (Text) , Parent (Text) , Lab (Text) , Scientist (Text) , Checksum_PrimaryData (Text) , BacterialParent (Text) , Checksum_PrimaryType (Text)
Not specified
An antibody sample contains purified immune proteins that specifically recognize and bind to target molecules. These samples are used in experimental procedures that detect, label, or isolate biological components. Each antibody is defined by its binding specificity, source, and production method.
UID (Text) *, Name (Text) , Vendor (Text) , Analyte (Text) , Clone (Text) , Fluorophore (Text) , ExperimentType (Text) , Isotype (Text) , CatalogLink (URI)
Not specified
An antibody panel sample represents a curated collection of antibodies used for detection or labeling in assays. It defines the set of reagents applied to measure or visualize specific proteins, cells, or molecular targets. This sample type is used to link AB's together into a single UID
UID (Text) *, Name (Text) , Parent (Text) , Scientist (Text)
Not specified
A flow cytometry file stores fluorescence and light-scattering measurements collected from individual cells or particles during cytometric analysis. It represents the digital output of a cytometer used to characterize cell populations and properties. Typical file type: .fcs
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Protocol (URI) , Scientist (Text) , SampleCreationDate (Text) , Parent (Text) , Instrument (Text) , Checksum_PrimaryData (Text) , Software (Text) , Fixation (Text) , Stimulation (Text) , AntibodyParent (Text) , Type (Text) , Repository (Text) , RepositoryID (Text) , Checksum_PrimaryType (Text)
Not specified
A flow cytometry analysis file contains processed results derived from raw cytometry data. It represents quantified cell populations, marker expression levels, or gating outcomes used for downstream statistical interpretation. Each file typically aggregates data from multiple raw samples into one analyzed dataset (many→1). Typical file types: .csv, .xlsx, .fcs
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Checksum_PrimaryData (Text) , Scientist (Text) , Parent (Text)
Not specified
