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1651 Data files visible to you, out of a total of 1747

/scripts/GC_content.py

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_GC_content-count

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_01_GC_content-count

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Created: 19th Mar 2020 at 10:49, Last updated: 19th Mar 2020 at 10:49

/output/StPGSC4.04n_seq_3_PGSC-c-rep_ITAG-cds_gff-2019-04-23.GC_len.tsv

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_GC_content-count

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_01_GC_content-count

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Created: 19th Mar 2020 at 10:48

/output/Solanum_tuberosum_PGSC_merged.CDS_GC.txt

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_GC_content-count

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_01_GC_content-count

Download

Created: 19th Mar 2020 at 10:48

/output/Solanum_tuberosum-ITAG_DM_v1_cds_GC.txt

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_GC_content-count

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_01_GC_content-count

Download

Created: 19th Mar 2020 at 10:48

/input/StPGSC4.04n_seq_3_PGSC-c-rep_ITAG-cds_gff-2019-04-23.fasta

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_GC_content-count

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_01_GC_content-count

Download

Created: 19th Mar 2020 at 10:48

/input/Solanum_tuberosum_PGSC_merged.fasta

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_GC_content-count

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_01_GC_content-count

Download

Created: 19th Mar 2020 at 10:48

/input/Solanum_tuberosum-ITAG_DM_v1_cds.fasta

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_GC_content-count

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_01_GC_content-count

Download

Created: 19th Mar 2020 at 10:48

/output/Rywal_tr.cds.tsv.gz

_p_stRT

Supplementary Table S5 Rywal biological evidence filtering results. Output of 1st filtering step by biological evidence for cv. Rywal.

Creator: Maja Zagorscak

Submitter: Maja Zagorscak

DOI: 10.15490/fairdomhub.1.datafile.3112.1

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_03.1_filtering

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Created: 15th Nov 2019 at 18:19, Last updated: 18th Mar 2020 at 18:26

/output/Desiree_tr.cds.tsv.gz

_p_stRT

Supplementary Table S3 Désirée biological evidence filtering results. Output of 1st filtering step by biological evidence for cv. Désirée.

Creator: Maja Zagorscak

Submitter: Maja Zagorscak

DOI: 10.15490/fairdomhub.1.datafile.3110.1

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_03.1_filtering

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Created: 15th Nov 2019 at 18:15, Last updated: 18th Mar 2020 at 18:25

/output/PW363_tr.cds.tsv.gz

_p_stRT

Supplementary Table S4 PW363 biological evidence filtering results. Output of 1st filtering step by biological evidence for breeding clone PW363.

Creator: Maja Zagorscak

Submitter: Maja Zagorscak

DOI: 10.15490/fairdomhub.1.datafile.3111.1

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_03.1_filtering

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Created: 15th Nov 2019 at 18:17, Last updated: 18th Mar 2020 at 18:25

/output/other/output_full.tar.gz

_p_stRT

No description specified

Creator: Maja Zagorscak

Submitter: Maja Zagorscak

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_03.1_filtering

Download

Created: 15th Nov 2019 at 19:46, Last updated: 25th Nov 2019 at 23:34

/output/other/output_summary.tar.gz

_p_stRT

No description specified

Creator: Maja Zagorscak

Submitter: Maja Zagorscak

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_03.1_filtering

Download

Created: 15th Nov 2019 at 19:48, Last updated: 25th Nov 2019 at 23:34

/reports/03.1_Rywal_combo_withFiltering.html

_p_stRT

No description specified

Creator: Maja Zagorscak

Submitter: Maja Zagorscak

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_03.1_filtering

Download

Created: 15th Nov 2019 at 19:51, Last updated: 25th Nov 2019 at 23:34

/reports/03.2_PW363_combo_withFiltering.html

_p_stRT

No description specified

Creator: Maja Zagorscak

Submitter: Maja Zagorscak

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_03.1_filtering

Download

Created: 15th Nov 2019 at 19:52, Last updated: 25th Nov 2019 at 23:34

/reports/03.3_Desiree_combo_withFiltering.html

_p_stRT

No description specified

Creator: Maja Zagorscak

Submitter: Maja Zagorscak

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_03.1_filtering

Download

Created: 15th Nov 2019 at 19:52, Last updated: 25th Nov 2019 at 23:34

/intermediate_Desiree.tar.gz

_p_stRT

No description specified

Creator: Maja Zagorscak

Submitter: Maja Zagorscak

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_02.2_assembly-contribution-count

Download

Created: 15th Nov 2019 at 19:38, Last updated: 25th Nov 2019 at 23:34

/intermediate_PW363.tar.gz

_p_stRT

No description specified

Creator: Maja Zagorscak

Submitter: Maja Zagorscak

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_02.2_assembly-contribution-count

Download

Created: 15th Nov 2019 at 19:39, Last updated: 25th Nov 2019 at 23:34

/intermediate_Rywal.tar.gz

_p_stRT

No description specified

Creator: Maja Zagorscak

Submitter: Maja Zagorscak

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_02.2_assembly-contribution-count

Download

Created: 15th Nov 2019 at 19:39, Last updated: 25th Nov 2019 at 23:34

/intermediate_4_cdhit-2d.tar.gz

_p_stRT

No description specified

Creator: Maja Zagorscak

Submitter: Maja Zagorscak

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_03.2_components

Download

Created: 15th Nov 2019 at 20:00, Last updated: 25th Nov 2019 at 23:34

/presentations/Figure2.pdf

_p_stRT

_p_stRT/_I_STRT pipeline

Creators: Maja Zagorscak, Marko Petek

Submitter: Maja Zagorscak

DOI: 10.15490/fairdomhub.1.datafile.3157.1

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

Download

Created: 16th Nov 2019 at 10:49, Last updated: 25th Nov 2019 at 23:33

/input/path_to_files.txt

_p_stRT

No description specified

Creator: Maja Zagorscak

Submitter: Maja Zagorscak

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_04_TransRate

Download

Created: 16th Nov 2019 at 11:17, Last updated: 25th Nov 2019 at 23:33

/scripts/run_TransRate_commands.sh

_p_stRT

No description specified

Creator: Maja Zagorscak

Submitter: Maja Zagorscak

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_04_TransRate

Download

Created: 16th Nov 2019 at 11:19, Last updated: 25th Nov 2019 at 23:33

/input/path_to_files.txt

_p_stRT

No description specified

Creator: Maja Zagorscak

Submitter: Maja Zagorscak

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_02.7_VecScreen

Download

Created: 16th Nov 2019 at 11:29, Last updated: 25th Nov 2019 at 23:33

/intermediate.tar.gz

_p_stRT

No description specified

Creator: Maja Zagorscak

Submitter: Maja Zagorscak

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_02.7_VecScreen

Download

Created: 16th Nov 2019 at 11:30, Last updated: 25th Nov 2019 at 23:33

/output/Desiree_vecscreen.tsv

_p_stRT

No description specified

Creator: Maja Zagorscak

Submitter: Maja Zagorscak

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_02.7_VecScreen

Download

Created: 16th Nov 2019 at 11:31, Last updated: 25th Nov 2019 at 23:33

/output/PW363_vecscreen.tsv

_p_stRT

No description specified

Creator: Maja Zagorscak

Submitter: Maja Zagorscak

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_02.7_VecScreen

Download

Created: 16th Nov 2019 at 11:31, Last updated: 25th Nov 2019 at 23:33

/output/Rywal_vecscreen.tsv

_p_stRT

No description specified

Creator: Maja Zagorscak

Submitter: Maja Zagorscak

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_02.7_VecScreen

Download

Created: 16th Nov 2019 at 11:32, Last updated: 25th Nov 2019 at 23:33

/scripts/01_get_input.sh

_p_stRT

No description specified

Creator: Maja Zagorscak

Submitter: Maja Zagorscak

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_02.7_VecScreen

Download

Created: 16th Nov 2019 at 11:33, Last updated: 25th Nov 2019 at 23:33

/scripts/02_VecScreenPlus_blastn.sh

_p_stRT

No description specified

Creator: Maja Zagorscak

Submitter: Maja Zagorscak

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_02.7_VecScreen

Download

Created: 16th Nov 2019 at 11:34, Last updated: 25th Nov 2019 at 23:33

/scripts/ENCH_sumablastplus.pl

_p_stRT

No description specified

Creator: Maja Zagorscak

Submitter: Maja Zagorscak

DOI: 10.15490/fairdomhub.1.datafile.3176.1

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_02.7_VecScreen

Download

Created: 16th Nov 2019 at 11:35, Last updated: 25th Nov 2019 at 23:33

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