JWS-online integration in FAIRDOMHub Version 1
SEEK ID: https://fairdomhub.org/presentations/775?version=1
Filename:
Fairdom-deNBI-2019-jls.pdf
Format: PDF document
Size: 2.25 MB
Export PNG
Contributor and Creators
Views: 420 Downloads: 54
Created: 6th Jun 2019 at 12:35
Last updated: 6th Jun 2019 at 13:04
Last used: 25th May 2020 at 21:49
AttributionsNone
Related items
Projects: SysMO-LAB, de.NBI-SysBio, Kinetics on the move - Workshop 2016, Example use cases, SBEpo - Systems Biology of Erythropoietin, FAIRDOM & LiSyM & de.NBI Data Structuring Training, FAIRDOM, EnzymeML, FAIRDOM Community Workers, GMDS Project Group "FAIRe Dateninfrastrukturen für die Biomedizinische Informatik", Working Group Nicole Radde, MIX-UP, CEPLAS – Cluster of Excellence on Plant Sciences, COVID-19 Disease Map
Institutions: Heidelberg Institute for Theoretical Studies (HITS gGmbH)
Within the de.NBI project my functions in the de.NBI-SysBio node comprise content curation, requirements elicitation, and community engagement for the users of biochemical reaction kinetics database SABIO-RK as well as of the data management platform SEEK.
Projects: PSYSMO, MOSES, SysMO DB, SysMO-LAB, SulfoSys, SulfoSys - Biotec, Whole body modelling of glucose metabolism in malaria patients, FAIRDOM, Molecular Systems Biology, COMBINE Multicellular Modelling, HOTSOLUTE, Steroid biosynthesis, Yeast glycolytic oscillations, Computational pathway design for biotechnological applications
Institutions: Manchester Centre for Integrative Systems Biology, University of Manchester, University of Stellenbosch, School of Computer Science, University of Manchester, Stellenbosch University
The Systems Biology Service Center of de.NBI (de.NBI-SysBio) provides bioinformatics support and a standards-based data management for systems biology projects, with focus on the provenance of experimental results and on the reproducibility of modeling experiments, as well as high-quality curated biochemical data to modelers and experimentalists.
The node concentrates on two tools for the data management in life sciences research: SEEK, a catalogue for storage, registration and exchange of data
...
Programme: de.NBI Systems Biology Service Center (de.NBI-SysBio)
Public web page: Not specified
During this 3-day course, attendees will learn basic techniques for modeling of biochemical networks including data access and storage due to the FAIR principles. The first day introduces kinetic modeling techniques which will be illustrated and exercised with COPASI. The second day continues with principles of stoichiometric and constraint-based modeling coupled with hands on exercises using CellNetAnalyzer. The third day SABIO-RK is used as a resource for kinetic data and FAIRDOMHub/SEEK is
...
Start Date: 18th Mar 2019
End Date: 20th Mar 2019
Event Website: http://copasi.org/denbi-modsim/workshop_2019/
Country: 
Germany
City: 69120 Heidelberg
