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Flux Balance Analysis of multi-compartment metabolic model of growing Arabidopsis thaliana

ZucAt

The multi-compartmental metabolic network of Arabidopsis thaliana was reconstructed and optimized in order to explain growth stoichiometry of the plant both in light and in dark conditions. Balances and turnover of energy (ATP/ADP) and redox (NAD(P)H/NAD(P)) metabolites as well as proton in different compartments were estimated. The model showed that in light conditions, the plastid ATP balance depended on the relationship between fluxes through photorespiration and photosynthesis including both ...

Submitter: Maksim Zakhartsev

Biological problem addressed: Metabolic Network

Investigation: Metabolic analysis of effects of sucrose transl...

Study: Analysis of central carbon and energy metabolis...

Organisms: Arabidopsis thaliana

Models: ZucAt: multi-compartment metabolic model of gro...

SOPs: No SOPs

Data files: ZucAt: FBA constraints for dark conditions, ZucAt: FBA constraints for light conditions, ZucAt: FBA solution of the model under dark gro..., ZucAt: FBA solution of the model under light gr..., ZucAt: FBA solution of the model under light gr..., ZucAt: FBA solution of the model under light gr..., ZucAt: FBA solution of the model under light gr..., ZucAt: FBA solution of the model under light gr..., ZucAt: The compound database, ZucAt: The gene database, ZucAt: The stoichiometric matrix of the model, ZucAt: The transformers database, ZucAt: the model documentation

Snapshots: No snapshots

Created: 21st Dec 2015 at 16:05, Last updated: 8th Nov 2017 at 14:21

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