Assays

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43 Assays visible to you, out of a total of 43

080115H2

BioDare1

080115H2

Property	Value
BioDare ID	2630
Author	Yvette Wilson
Institution
License

Description

Experimental conditions (Red and Blue) 12 hours light : 12 hours dark x4 followed by 3 days constant light. light is at 90umolm-2s-1 (red = 51 umolm-2s-1, blue = 32 umol-2s-1)

Purpose

Comparison of Light:Shady night versus standard lights ON/OFF to dissect the role of photoreceptors and photosynthesis in the circadian clock.

Comments

...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: TiMet shady nights

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 080115H2_LOG.xlsx, 080115H2_metamorph.xlsx, BioDare_metadata.json, Readme.md, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 15:11, Last updated: 23rd Jul 2026 at 13:12

210814H2

BioDare1

210814H2

Property	Value
BioDare ID	1926
Author	Yvette Wilson
Institution
License

Description

Experimental conditions (Red and Blue) 12 hours light : 12 hours dark x7 light is at 90umolm-2s-1 (red = 51 umolm-2s-1, blue = 32 umol-2s-1)

Purpose

Comparison of Light:Shady night versus standard lights ON/OFF to dissect the role of photoreceptors and photosynthesis in the circadian clock.

Comments

Partner experiment: 210814H1

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: TiMet shady nights

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 210814H2_LOG.xlsx, 210814H2_metamorph.xlsx, BioDare_metadata.json, Readme.md, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 15:07, Last updated: 23rd Jul 2026 at 13:12

210814H1

BioDare1

210814H1

Property	Value
BioDare ID	1925
Author	Yvette Wilson
Institution
License

Description

Plants entrained in 12L 12D white light.

Experimental conditions (Red and Blue) 12 hours light (90umolm-2s-1): 12 hours shady dark (6 umolm-2s-1) x7, Dawn is at ZT0 and dusk (shady dark) is at ZT12.

Purpose

Comparison of Light:Shady night versus standard lights ON/OFF to dissect the role of photoreceptors and photosynthesis in the ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: TiMet shady nights

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 210814H1_LOG.xlsx, 210814H1_metamorph.xlsx, BioDare_metadata.json, Readme.md, SCRIPT.CSV, SCRIPT01.CSV, SCRIPT02.csv, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 15:09, Last updated: 23rd Jul 2026 at 13:12

190614H1

BioDare1

190614H1

Property	Value
BioDare ID	1642
Author	Yvette Wilson
Institution
License

Description

Plants entrained in 12L 12D white light.

Experimental conditions (Red and Blue) 12 hours light (90umolm-2s-1): 12 hours shady dark (6 umolm-2s-1) x4, constant light x3. Dawn is at ZT0 and dusk (shady dark) is at ZT12.

Purpose

Comparison of Light:Shady night versus standard lights ON/OFF to dissect the role of photoreceptors and ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: TiMet shady nights

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 190614H1_metamorph.xlsx, 290614H1_LOG.xlsx, BioDare_metadata.json, Readme.md, SCRIPT.CSV, SCRIPT01.CSV, SCRIPT02.csv, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 15:05, Last updated: 23rd Jul 2026 at 13:12

190614H2

BioDare1

190614H2

Property	Value
BioDare ID	1643
Author	Yvette Wilson
Institution
License

Description

Experimental conditions (Red and Blue) 12 hours light : 12 hours dark x4 followed by 3 days constant light. light is at 90umolm-2s-1 (red = 51 umolm-2s-1, blue = 32 umol-2s-1)

Purpose

Comparison of Light:Shady night versus standard lights ON/OFF to dissect the role of photoreceptors and photosynthesis in the circadian clock.

Comments

...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: TiMet shady nights

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 190614H2_LOG.xlsx, 190614H2_metamorph.xlsx, BioDare_metadata.json, Readme.md, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 15:03, Last updated: 23rd Jul 2026 at 13:12

270313H1: 21L 7Dx4 LLx3 (T-28)

BioDare1

270313H1: 21L 7Dx4 LLx3 (T-28)

Property	Value
BioDare ID	13649842953637
Author	Wei Ven Tee
Institution	University of Edinburgh
License	CC_BY

Description

Plants entrained in 21L 7D Experimental conditions: 21L7Dx4 LLx3

Purpose

To test whether cca1/lhy double mutant can adjust to change in photoperiod in T-cycle

Comments

5mins of light at the end of daytime during the first three imaging days appear to be absent, ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 270313H1.csv, 270313H1.rgn, 270313H1_IMG_21L7D.csv, BioDare_metadata.json, RAW_270313H1.xlsx, Readme.md, STANDARD_DATAFILE.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 14:20, Last updated: 23rd Jul 2026 at 13:12

200313H2: 7L 21Dx4 LLx3 (T-28)

BioDare1

200313H2: 7L 21Dx4 LLx3 (T-28)

Property	Value
BioDare ID	13643892291642
Author	Wei Ven Tee
Institution	University of Edinburgh
License	CC_BY

Description

Plants entrained in 7L 21D Experimental conditions: 7L21Dx4 LLx3

Purpose

To test whether cca1/lhy double mutant can adjust to change in photoperiod in T-cycle

Comments

5mins of light at the end of daytime on imaging day 2 and day 3 appeared to be absent, using the ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 200313H1_7L21D.csv, 200313H2.rgn, 200313H2_IMG_7L21D.csv, BioDare_metadata.json, RAW_200313H2.xlsx, Readme.md, STANDARD_DATAFILE.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 14:15, Last updated: 23rd Jul 2026 at 13:12

290313H2: 15L 5Dx4 LLx3

BioDare1

290313H2: 15L 5Dx4 LLx3

Property	Value
BioDare ID	13649886952409
Author	Wei Ven Tee
Institution	University of Edinburgh
License	CC_BY

Description

Plants entrained in 15L 5D Experimental conditions: 15L 5Dx4 LLx3

Purpose

To test whether cca1/lhy double mutant can adjust to change in photoperiod in T-cycle

Comments

5mins of light at the end of daytime during the first three imaging days appear to be absent, using the ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 290313H2.rgn, 290313H2_15L5D_1.csv, 290313H2_15L5D_2.csv, 290313H2_15L5D_IMG.csv, BioDare_metadata.json, RAW_290313H2.xlsx, Readme.md, STANDARD_DATAFILE.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 14:08, Last updated: 23rd Jul 2026 at 13:12

270313H3: 12L-12Dx4 LLx3

BioDare1

270313H3: 12L-12Dx4 LLx3

Property	Value
BioDare ID	13650039169340
Author	Jamie Carrington
Institution	University of Edinburgh
License	CC_BY

Description

Plants entrained in 12L 12D white light Experimental conditions: 12L-12Dx4 LLx3 ('white')

Purpose

'White' (red+blue) light control experiment for the phytochrome and cryptochrome experiments

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 270313H3.rgn, 270313H3_12L12D_x4_LLx3_White.csv, BioDare_metadata.json, Raw Data.xlsx, Readme.md, STANDARD_DATAFILE.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:49, Last updated: 23rd Jul 2026 at 13:12

200313H3: 12L-12Dx4 LLx3

BioDare1

200313H3: 12L-12Dx4 LLx3

Property	Value
BioDare ID	13644021710933
Author	Jamie Carrington
Institution	University of Edinburgh
License	CC_BY

Description

Plants entrained in 12L 12D white light Experimental conditions: 12L-12Dx4 LLx3 ('white')

Purpose

'White' (red+blue) light control experiment for the phytochrome and cryptochrome experiments

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 200313H3.rgn, 200313H3_12L12D_x4_LLx3_White.csv, BioDare_metadata.json, Raw Data.xlsx, Readme.md, STANDARD_DATAFILE.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:52, Last updated: 23rd Jul 2026 at 13:12

060213H3: 12B-12Dx4 BBx3

BioDare1

060213H3: 12B-12Dx4 BBx3

Property	Value
BioDare ID	13615365050841
Author	Jamie Carrington
Institution	University of Edinburgh
License	CC_BY

Description

Plants entrained in 12L 12D white light Experimental conditions: 12L-12Dx4 LLx3 (Blue)

Purpose

Test how the cryptochromes interact with the circadian clock (WT, lhy/cca1 double mutant and lhy/cca1/gi triple mutant)

Comments

Imaging script started at ZT+7mins, therefore ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 060213H3 Raw Data.2.xlsx, 060213H3.rgn, BioDare_metadata.json, Readme.md, STANDARD_DATAFILE.2.txt, STANDARD_RAWDATAFILE.2.txt, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:45, Last updated: 23rd Jul 2026 at 13:12

030413H3: 12B-12Dx4 BB3

BioDare1

030413H3: 12B-12Dx4 BB3

Property	Value
BioDare ID	13661271159675
Author	Jamie Carrington
Institution	University of Edinburgh
License	CC_BY

Description

Plants entrained in 12L 12D white light Experimental conditions: 12L-12Dx4 LLx3 (Blue)

Purpose

Test how the cryptochromes interact with the circadian clock (WT, lhy/cca1 double mutant and lhy/cca1/gi triple mutant)

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 030413H3.rgn, 030413H3_12L12D_x4_LLx3_Blue.csv, BioDare_metadata.json, Raw Data.xlsx, Readme.md, STANDARD_DATAFILE.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:47, Last updated: 23rd Jul 2026 at 13:12

AT0048 4x 18:6-DD

BioDare1

AT0048 4x 18:6-DD

Property	Value
BioDare ID	12730752301671
Author	Adrian Thomson
Institution	University of Edinburgh
License	CC_BY

Description

4 days of 18hrs light, 6hrs dark into 3 days constant dark

Purpose

changes to photoperiod

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: AT0048.1.xls, AT0048.rgn, AT0048.xls_imported, AT0048_BRASS.xls, AT0048_BRASSDerandomized.xls, BioDare_metadata.json, Readme.md, STANDARD_DATAFILE.1.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:31, Last updated: 23rd Jul 2026 at 13:12

Assays

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080115H2

Description

Purpose

Comments

210814H2

Description

Purpose

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210814H1

Description

Purpose

190614H1

Description

Purpose

190614H2

Description

Purpose

Comments

270313H1: 21L 7Dx4 LLx3 (T-28)

Description

Purpose

Comments

200313H2: 7L 21Dx4 LLx3 (T-28)

Description

Purpose

Comments

290313H2: 15L 5Dx4 LLx3

Description

Purpose

Comments

270313H3: 12L-12Dx4 LLx3

Description

Purpose

Comments

200313H3: 12L-12Dx4 LLx3

Description

Purpose

Comments

060213H3: 12B-12Dx4 BBx3

Description

Purpose

Comments

030413H3: 12B-12Dx4 BB3

Description

Purpose

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AT0048 4x 18:6-DD

Description

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