Assays

What is an Assay?

165 Assays visible to you, out of a total of 165

RNA Extraction: Validation Data - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Systems-level computational translation of mous...

Organisms: No organisms

SOPs: P.SAS-241120-V1_RNAseq-Protocol.docx

Data files: samples-publish_KPRF_SAS_CEL.xlsx, samples-publish_KPRF_SAS_RNA.xlsx

Snapshots: No snapshots

Created: 5th Feb 2025 at 18:33, Last updated: 5th Feb 2025 at 20:00

Cell Extraction: Validation Data - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Systems-level computational translation of mous...

Organisms: No organisms

SOPs: P.SAS-241120-V1_Bacterial-culture-protocol.docx, P.SAS-241120-V1_Cell-culture-protocol.docx

Data files: samples-publish_KPRF_SAS_BAC.xlsx, samples-publish_KPRF_SAS_CEL.xlsx, samples-publish_KPRF_SAS_MUS.xlsx

Snapshots: No snapshots

Created: 5th Feb 2025 at 18:30, Last updated: 5th Feb 2025 at 19:47

Gene Expression Analysis: Training Data - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Systems-level computational translation of mous...

Organisms: No organisms

SOPs: No SOPs

Data files: samples-publish_KPRF_A.GEX.xlsx, samples-publish_KPRF_D.SEQ.xlsx

Snapshots: No snapshots

Created: 5th Feb 2025 at 18:30, Last updated: 5th Feb 2025 at 19:29

Short Read Sequencing: Training Data - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Systems-level computational translation of mous...

Organisms: No organisms

SOPs: No SOPs

Data files: samples-publish_KPRF_D.SEQ.xlsx, samples-publish_KPRF_DNA.xlsx

Snapshots: No snapshots

Created: 5th Feb 2025 at 18:29, Last updated: 5th Feb 2025 at 19:26

Library Prep: Training Data - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Systems-level computational translation of mous...

Organisms: No organisms

SOPs: No SOPs

Data files: samples-publish_KPRF_DNA.xlsx, samples-publish_KPRF_RNA.xlsx, samples-publish_KPRF_TIS.xlsx

Snapshots: No snapshots

Created: 5th Feb 2025 at 18:28, Last updated: 5th Feb 2025 at 19:23

Tissue Collection: Training Data - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Systems-level computational translation of mous...

Organisms: No organisms

SOPs: No SOPs

Data files: samples-publish_KPRF_BAC.xlsx, samples-publish_KPRF_MUS.xlsx, samples-publish_KPRF_PAT.xlsx, samples-publish_KPRF_PAV.xlsx, samples-publish_KPRF_TIS.xlsx

Snapshots: No snapshots

Created: 5th Feb 2025 at 17:09, Last updated: 5th Feb 2025 at 19:06

Digitally Barcoded Mtb Matrix Analysis - Data Attached

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Intravenous BCG-mediated protection against tub...

Organisms: No organisms

SOPs: No SOPs

Data files: A.DBMM-ASIVBCG.xlsx, samples-publishAS-BCG_A.DBMM, samples-publishAS-BCG_D.SEQ

Snapshots: No snapshots

Created: 23rd Jan 2025 at 20:37, Last updated: 3rd Feb 2025 at 22:38

Short Read Sequencing - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Intravenous BCG-mediated protection against tub...

Organisms: No organisms

SOPs: P.FOR-230503-V1_Barcoding_Amplicon_Feb2023

Data files: samples-publishAS-BCG_D.SEQ, samples-publishAS-BCG_DNA

Snapshots: No snapshots

Created: 23rd Jan 2025 at 20:35, Last updated: 3rd Feb 2025 at 22:36

Library Prep - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Intravenous BCG-mediated protection against tub...

Organisms: No organisms

SOPs: P.FOR-230503-V1_Barcoding_Amplicon_Feb2023

Data files: samples-publishAS-BCG_BAC_extracted, samples-publishAS-BCG_DNA

Snapshots: No snapshots

Created: 23rd Jan 2025 at 20:23, Last updated: 3rd Feb 2025 at 22:27

Bacterial Extraction - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Intravenous BCG-mediated protection against tub...

Organisms: No organisms

SOPs: P.FOR-231011_Bacterial Extraction

Data files: samples-publishAS-BCG_BAC_extracted, samples-publishAS-BCG_TIS.xlsx

Snapshots: No snapshots

Created: 23rd Jan 2025 at 20:22, Last updated: 3rd Feb 2025 at 22:20

PET-CT Scan - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Intravenous BCG-mediated protection against tub...

Organisms: No organisms

SOPs: P.FLY-220823-V1_P---PET_CT_Imaging.docx

Data files: samples-publishAS-BCG_D.IMG.xlsx, samples-publishAS-BCG_PAV.xlsx

Snapshots: No snapshots

Created: 23rd Jan 2025 at 20:20, Last updated: 3rd Feb 2025 at 22:14

Tissue Collection - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Intravenous BCG-mediated protection against tub...

Organisms: No organisms

SOPs: P.FLY-250203-V1_IVBCG-AS-NHP-Protocol.docx

Data files: samples-publishAS-BCG_PAV.xlsx, samples-publishAS-BCG_TIS.xlsx

Snapshots: No snapshots

Created: 23rd Jan 2025 at 20:18, Last updated: 3rd Feb 2025 at 21:55

Flow Cytometry - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Intravenous BCG-mediated protection against tub...

Organisms: No organisms

SOPs: No SOPs

Data files: samples-publishAS-BCG_TIS.xlsx

Snapshots: No snapshots

Created: 23rd Jan 2025 at 20:38, Last updated: 3rd Feb 2025 at 21:55

Patient Visit - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Intravenous BCG-mediated protection against tub...

Organisms: No organisms

SOPs: P.FLY-250203-V1_IVBCG-AS-NHP-Protocol.docx

Data files: samples-publishAS-BCG_AB.xlsx, samples-publishAS-BCG_BAC.xlsx, samples-publishAS-BCG_NHP.xlsx, samples-publishAS-BCG_PAV.xlsx

Snapshots: No snapshots

Created: 23rd Jan 2025 at 20:17, Last updated: 3rd Feb 2025 at 21:24

Histology - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Comparable Non-canonical T cell responses are a...

Organisms: No organisms

SOPs: P.SAS-250124-V1_Histology-Protocol.docx

Data files: samples-publishMP_RSTR-D.IMG.xlsx, samples-publishMP_RSTR-TIS.xlsx

Snapshots: No snapshots

Created: 23rd Jan 2025 at 21:13, Last updated: 24th Jan 2025 at 20:55

Flow Cytometry Analysis - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Intravenous BCG-mediated protection against tub...

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 23rd Jan 2025 at 20:40

All Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: High-dose intravenous BCG vaccination induces e...

Organisms: No organisms

SOPs: No SOPs

Data files: JP_IVBCG_AllMetadata.xlsx

Snapshots: No snapshots

Created: 4th Dec 2024 at 20:39, Last updated: 5th Dec 2024 at 16:15

Library Creation - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: High-dose intravenous BCG vaccination induces e...

Organisms: No organisms

SOPs: P.SHA-220819-V1_SeqWellHughes.et.al.Master.Prot...

Data files: samples-publishJP_IVCBG_DNA.xlsx, samples-publishJP_IVCBG_TIS.xlsx

Snapshots: No snapshots

Created: 2nd Dec 2024 at 19:23, Last updated: 5th Dec 2024 at 16:15

Tissue Collection - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: High-dose intravenous BCG vaccination induces e...

Organisms: No organisms

SOPs: P.BRY-241204-V1_StudyDesign_JP_IVBCG.docx

Data files: samples-publishJP_IVCBG_PAV.xlsx, samples-publishJP_IVCBG_TIS.xlsx

Snapshots: No snapshots

Created: 2nd Dec 2024 at 19:22, Last updated: 5th Dec 2024 at 16:15

Short Read Sequencing - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: High-dose intravenous BCG vaccination induces e...

Organisms: No organisms

SOPs: P.SHA-220819-V1_SeqWellHughes.et.al.Master.Prot...

Data files: samples-publishJP_IVCBG_D.SEQ.xlsx, samples-publishJP_IVCBG_DNA.xlsx

Snapshots: No snapshots

Created: 2nd Dec 2024 at 19:24, Last updated: 4th Dec 2024 at 21:13

Single Cell Expression Analysis - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: High-dose intravenous BCG vaccination induces e...

Organisms: No organisms

SOPs: P.SHA-220912-V1_Drop-seq_Alignment_Cookbook.pdf

Data files: samples-publishJP_IVCBG_A.SCXP.xlsx, samples-publishJP_IVCBG_D.SEQ.xlsx

Snapshots: No snapshots

Created: 2nd Dec 2024 at 19:25, Last updated: 4th Dec 2024 at 21:13

Patient Visit - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: High-dose intravenous BCG vaccination induces e...

Organisms: No organisms

SOPs: P.BRY-241204-V1_StudyDesign_JP_IVBCG.docx

Data files: samples-publishJP_IVCBG_BAC.xlsx, samples-publishJP_IVCBG_NHP.xlsx, samples-publishJP_IVCBG_PAV.xlsx

Snapshots: No snapshots

Created: 2nd Dec 2024 at 19:20, Last updated: 4th Dec 2024 at 21:13

Model Validation

Hi-IMPAcTB

Training data for this Model is available: https://fairdomhub.org/studies/1198

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multi-modal data integration using Markov Field...

Organisms: No organisms

SOPs: P.LAU-240111-V1_SW_LMM_ReadMe.docx

Data files: samples-publishSW_A.FLOW.xlsx, samples-publishSW_A.TITR.xlsx, samples-publishSW_MDL.xlsx

Snapshots: No snapshots

Created: 31st Jul 2024 at 19:45, Last updated: 9th Oct 2024 at 19:32

All Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multi-modal data integration using Markov Field...

Organisms: No organisms

SOPs: No SOPs

Data files: RITUX SW - All Metadata.xlsx

Snapshots: No snapshots

Created: 17th Sep 2024 at 20:29, Last updated: 18th Sep 2024 at 14:53

Flow Cytometry Analysis - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multi-modal data integration using Markov Field...

Organisms: No organisms

SOPs: P.FLY-240411-V1_Flynn_RITUX_Flow_Cytometry_Prot...

Data files: samples-publishSW_A.FLOW.xlsx, samples-publishSW_D.FLOW.xlsx

Snapshots: No snapshots

Created: 31st Jul 2024 at 19:44, Last updated: 18th Sep 2024 at 14:53

Antibody Titer Analysis - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multi-modal data integration using Markov Field...

Organisms: No organisms

SOPs: P.ALT-231222-V1_ivbcg_ritux_ab_methods.docx

Data files: samples-publishSW_A.TITR.xlsx, samples-publishSW_D.TITR.xlsx

Snapshots: No snapshots

Created: 31st Jul 2024 at 19:43, Last updated: 18th Sep 2024 at 14:53

Antibody Titer - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multi-modal data integration using Markov Field...

Organisms: No organisms

SOPs: P.ALT-231222-V1_ivbcg_ritux_ab_methods.docx

Data files: samples-publishSW_D.TITR.xlsx, samples-publishSW_TIS.xlsx

Snapshots: No snapshots

Created: 31st Jul 2024 at 19:42, Last updated: 18th Sep 2024 at 14:53

PET/CT Scan - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multi-modal data integration using Markov Field...

Organisms: No organisms

SOPs: P.FLY-230523-V1_PET_CT_Imaging

Data files: samples-publishSW_D.IMG.xlsx, samples-publishSW_PAV.xlsx

Snapshots: No snapshots

Created: 31st Jul 2024 at 19:41, Last updated: 18th Sep 2024 at 14:53

Tissue Collection - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multi-modal data integration using Markov Field...

Organisms: No organisms

SOPs: P.FLY-240808-V1_TISs_RITUX.docx

Data files: samples-publishSW_PAV.xlsx, samples-publishSW_TIS.xlsx

Snapshots: No snapshots

Created: 31st Jul 2024 at 19:40, Last updated: 18th Sep 2024 at 14:53

Patient Visit - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multi-modal data integration using Markov Field...

Organisms: No organisms

SOPs: P.FLY-240808-V1_NHPs_RITUX.docx

Data files: samples-publishSW_NHP.xlsx, samples-publishSW_PAV.xlsx

Snapshots: No snapshots

Created: 31st Jul 2024 at 19:39, Last updated: 18th Sep 2024 at 14:53

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