Institutions

Independent Projects140 Disease Maps131 SysMO69 ERASysAPP51 FAIRDOM44 Era CoBioTech42 HUMET23 de.NBI Systems Biology Service Center (de.NBI-SysBio)22 COST ACTION CA21111 - OneHealthdrugs (One Health drugs against parasitic vector borne diseases in Europe and beyond) 20 COMBINE (Computational Modeling in Biology Network)19 EU Projects19 e:Bio16 LiSyM - Systems Medicine of the Liver15 Model repository for M4 (Make Me My Model) clients of ISBE12 nfdi4health - German National Research Data Infrastructure for Personal Health Data12 FAIR Biocatalysis12 The Digital Salmon11 NIBSys11 DFG founded projects11 e:med8 DLN - OXYMOD7 CoolWine7 BlueBio ERA-NET COFUND7 M-era.Net 3D4D27 SynthSys6 German Association for Medical Informatics, Biometry and Epidemiology (GMDS)6 Systems Biology Programme5 WooBAdh5 ISBE.NL service programme5 SARCHI: Mechanistic modelling of health and epidemiology4 dCod 1.0: decoding systems toxicology of cod4 Druglogics4 MS_DILI4 BioZEment4 Newcastle University Systems Modelling of Ageing4 ERNEST - European Research Network on Signal Transduction4 Drug development for neglected parasitic diseases4 Covid-19 disease map - Bioinformatics analysis and computational modelling4 SAFE-Aqua3 C19DM-Neo4j3 IMPAcTB3 iPlacenta: ​A European Union Horizon 2020 innovative training network (ITN)3 New strategies to detect cancers in carriers of mutations in RB1: blood tests based on tumor-educated platelets, or extracellular vesicles.3 Journals2 Auromega2 Breast Cancer Simulation2 Gygli Group2 Cancer drug discovery preclinical research2 Thermodynamics and kinetics for Biology2 Experimental Transplantation Surgery2 Research Center Borstel2 Multicomponent Therapy for Age-related Skin Stem Cell Deficiency2 CropXR2 Halliday Lab1 Mathematical modelling of the morphological transition of Pseudomonas aeruginosa1 Proteome Centre Tuebingen1 Laboratory of the /cytoplasmic/ heredity (Institute of Genetics and Cytology, NAS Belarus)1 Earth and Life Institute1 The Novo Nordisk Foundation Center for Biosustainability1 API_testing_projects1 Skin Ageing and Senescence1 Thesis AHG 20191 KOCH1 Modelling Light Control of Development1 GPSLab testing Programme1 RNA Systems Biology Lab1 Interface MIAPPE / BrAPI1 Innate immunity1 Synthetic Biology HHU1 BioSpec1 Data_Management_lessons1 Ugent data stewards1 ILVO test1 DiaPhotosynth1 MRRDEP1 Pseudomonas putida metabolism1 Biomics Platform1 3DMM2O1 Hellenic Foundation for Research and Innovation - Supporting academic Staff and Researchers1 Test program1 NORCE Environment Test1 IDPfun Test programme1 Von Hippel-Lindau (VHL) Tumor Suppressor research programme1 Systems Brewology1 Hallmarks of cancer 1 MIT Superfund Research1 Macrophage logical modeling1 An overview of systematic reviews of treatment of polycystic ovary syndrome with Chinese medicine1 Supplemental Data for "Why did the eyewall replacement cycle in Trami terminate rapidly? "1 Combined therapy involving Scalp Acupuncture and Treadmill Training Inhibits Neuronal Apoptosis in Cerebral Ischemia Rats by regulating cIAP11 Testing 1, 2, 31 Clostridium beijerinckii1 CLIMAQUA1 Electroacupuncture preconditioning reduces oxidative stress in the acute phase of cerebral ischemia-reperfusion in rats by regulating iron metabolism pathways1 The Effect of Nape Acupuncture Combined with Rehabilitation Training on Dysphagia After Stroke1 Aneurinibacillus thermoaerophilus CCM 8960 metabolic pathways model1 Public1 JUANGMC1 MPIB1 RNA-seq1 MultiDefence - sLoLa1 NL-Bioimaging: FAIR-DM 1 Wellcome Trust Development Grant - Unshackling membrane proteins ...1 SB2CLab1 TCGA-reanalysis1 Metastasis Network1 Metabolic Modeling1 IBG-11 BaPro1 SampleDB_programme1 VHP Programme1 Japanese Data in Global Plant Research1 Targeted VFA production from (waste) waters - CRETUS1 Applied Lipidomics Göttingen1 Independent Project1 Data science üBUNG1 Biotechnologische Oxidation von Cellobiose zu Cellobionsäure1 TUM Data Science lecture1 Uni Heidelberg URZ-Demo1 CMG Test1 More...

COVID-19 Disease Map131 FAIRDOM user meeting40 ICYSB 2015 - International Practical Course in Systems Biology29 HUMET Startup23 CC-TOP19 COMBINE Multicellular Modelling17 MESI-STRAT17 PoLiMeR - Polymers in the Liver: Metabolism and Regulation17 BaCell-SysMO15 PSYSMO13 SulfoSys13 nfdi4health - German National Research Data Infrastructure for Personal Health Data12 WG1 - Compound libraries coordination and integration of compound design12 SulfoSys - Biotec11 EnzymeML11 SCyCode The Autotrophy-Heterotrophy Switch in Cyanobacteria: Coherent Decision-Making at Multiple Regulatory Layers11 SysMO-LAB10 SysVirDrug10 SNAPPER: Synergistic Neurotoxicology APP for Environmental Regulation10 COVID-19 related studies and tools in Germany9 Standardization of enzyme-catalyzed reaction measurement9 Standardization of enzyme-catalyzed reaction modelling9 WG2 - Integration of early phase studies and low environmental impact actions9 COSMIC8 TRANSLUCENT8 Kinetics on the move - Workshop 20168 EmPowerPutida8 Rhodolive8 FAIRDOM Community Workers8 MIX-UP8 STREAM7 FAIRDOM7 SysMetEx7 IMOMESIC7 GenoSysFat7 DigiSal7 OXYMOD7 Sustainable co-production7 BESTER7 HOTSOLUTE7 TRALAMINOL7 CoolWine7 AquaHealth (ERA-BlueBio)7 Cell4Chem7 KOSMOBAC6 MOSES6 SysMilk6 EraCoBiotech 2 nd call proposal preparation6 GMDS Project Group "FAIRe Dateninfrastrukturen für die Biomedizinische Informatik"6 C1Pro6 Project Coordination6 WG3 - Coordination of in vitro-to-in vivo translation of OneHealth leads and candidates6 SUMO5 SCaRAB5 SysMO DB5 SilicoTryp5 MetApp5 CropClock5 SYSTERACT5 LEANPROT5 ExtremoPharm5 SBEpo - Systems Biology of Erythropoietin5 FAIRDOM & LiSyM & de.NBI Data Structuring Training5 SynBio4Flav5 INDIE - Biotechnological production of sustainable indole5 Environmentally-friendly bioadhesives from renewable resources (WooBAdh)5 Mechanism based modeling viral disease ( COVID-19 ) dynamics in human population5 WP 4: Evaluation of drug activity against multiple life cycle stages of malaria parasites5 PhotoBoost5 iRhythmics4 ROBUSTYEAST4 ZucAt4 Early Metabolic Injury (LiSyM-EMI - Pillar I)4 Chronic Liver Disease Progression (LiSyM-DP - Pillar II)4 Regeneration and Repair in Acute-on-Chronic Liver Failure (LiSyM-ACLF - Pillar III)4 Systems toxicology of Atlantic cod4 Service to URV Tarragona, Spain with respect to their Safety Assessment of Endocrine Disrupting Chemicals model (Active NOW)4 MycoSynVac - Engineering Mycoplasma pneumoniae as a broad-spectrum animal vaccine4 SEEK tutorial for DigiSal4 Colosys4 MS_DILI4 BioZEment 2.04 INCOME4 SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture4 ERNEST Mapping Group Pilot Study4 NMTrypI - New Medicines for Trypanosomatidic Infections4 ModeleXchange initiative4 Modelling COVID-19 epidemics4 Covid-19 Interferon pathway modelling and analysis4 Xenophiles Systems Biology4 WP 2: Antimalarial drug encapsulation4 WP 5: Intradermal 3D drug device administration4 DigiSal-BT81214 Implementation of Nanopore Sequencing for Detection of Treatment Induced Transcriptomic and Epitranscriptomic Changes in Leukaemic Tumour Models4 Noisy-Strep3 Whole body modelling of glucose metabolism in malaria patients3 WineSys3 XyloCut3 RootBook3 de.NBI-SysBio3 Multi-Scale Models for Personalized Liver Function Tests (LiSyM-MM-PLF)3 CausalDB3 SAFE-Aqua3 PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops3 TiMet3 Dynamic interplay between nuclei and mitochondria in ageing cells3 NAD COMPARTMENTATION3 _p_stRT3 C19DM-Neo4j3 Hi-IMPAcTB3 SASKit: Senescence-Associated Systems diagnostics Kit for cancer and stroke3 WP 3: Drug release kinetics study3 SDBV ephemeral data exchanges3 The BeeProject3 EbN1 Systems Biology3 NIRBTEST3 WG5 - Promote dissemination3 WG6 - Promote the transfer of knowledge3 Establishing an innovative and transnational feed production approach for reduced climate impact of the aquaculture sector and future food supply3 SysMO Funders2 Molecular Systems Biology2 Model Guided Pharmacotherapy In Chronic Liver Disease (LiSyM-MGP)2 The Hedgehog Signalling Pathway (LiSyM-JGMMS)2 Example use cases2 ErasysApp Funders2 INBioPharm2 Service to Universidade Católica Portugues with respect to their Molecular Insight into Autism Spectrum Disorder (ASD) model (Active NOW)2 Service to Slovenia with respect to their Protease signaling network in neurodegeneration model (Active NOW)2 WG Infrastructure for Translational Research2 POP - the Parameter Optimisation Problem2 Multiscale modelling of state transitions in the host-microbiome-brain network2 Extremophiles metabolsim2 Regulation of flowering time in natural conditions2 Systems modelling age-related changes in the maintenance of dermal extra-cellular matrix: mechanisms and interventions2 Auromega2 OLCIR: Optimization of Lung Cancer Therapy with Ionizing Radiation2 Computational pathway design for biotechnological applications2 Stress granules2 NAD phylogeny2 Outreach - Simulation of breast cancer development using an agent based modelling approach2 Outreach - Breast Cancer RStudio-Shiny application2 CoVIDD - Coronavirus interactions in drug discovery - optimization and implementation2 Mass spectrometry proteomics for biomarker discovery2 Molecular characterization and angiogenic properties of extracellular vesicles in healthy and preeclamptic amniotic fluid2 WP 1: Biodegradable and responsive polymer matrix2 Thymidylate synthase dimer dissociation2 Heat stress response of the red-tide dinoflagellate Prorocentrum cordatum2 SteaPKMod2 MESI-STRAT Review2 Adaptation of Salmonella enterica2 Virtual Human Platform for Safety Assessment2 ToxiGen - Reproductive toxicity and transgenerational effects of petroleum mixtures in fish2 MESI-Review 20242 Project 3: Multipotent ABCB5(+) Stem Cells for Therapy of Age-related Skin Disorders2 Methylation differences during respiratory infection2 EDITH (Ecosystem Digital Twins in Health) test project2 Manchester Institute for Biotechnology1 LiSyM Core Infrastructure and Management (LiSyM-PD)1 Liver Function Diagnostics (LiSyM-LiFuDi - Pillar IV)1 Molecular Steatosis - Imaging & Modeling (LiSyM-MSIM)1 HYp - Spatiotemporal analysis of hypersensitive response to Potato virus Y in potato1 pISA-tree1 Millar group1 Systo models1 Service to Milano-Bicocca with respect to their ATP-ROS model (Active NOW)1 Make Me My Model1 Service to University of Lisbon (Portugal) with respect to their CFTR maturation model (Active NOW)1 Service to LCSB (Luxembourg) with respect to ROS management in Parkinson’s disease and cancer model (Active NOW)1 Service to University of Duisburg- Essen (Germany): with respect to their The Yin-Yang of Metabolism; Endometatoxicity (YYME) model (Active NOW)1 Service to Sheffield University (UK): with respect to Mitochondrial perfect adaptation model (Active NOW)1 Service to Sanquin (Amsterdam): with respect to Modelling of acute and chronic inflammation (Prospective)1 Service to Munich (Germany): with respect toCharged peptide to charged membrane binding model (Prospective)1 Training Hunfeld1 WURSynBio1 MOA - Multiomics analysis of potato response to Potato virus Y (PVY) infection1 Mathematical modelling of the antibiotic-induced morphological transition of Pseudomonas aeruginosa1 Crossover Research 2.01 NTNU Health Druglogics1 ROS detailed model for MSB manucript1 Steroid biosynthesis1 Yeast glycolytic oscillations1 Proteogenomics of melanoma1 DCM1 Are microRNAs key mediators of cartilage destruction in osteoarthritis?1 Lobet's group1 Escherichia coli chemical product tolerance1 Fairdom Hub documents1 PlaSMo model repository1 RStudio-Shiny and Java_API connection testing1 Thesis1 BIOMICRO PROJECT1 Agro-ecological modelling1 Light and plant development1 Light control of leaf development1 Bergen(Ziegler lab) project AF-NADase1 NAMPT affinity1 GPSLab testing1 Outreach - Senescence RStudio-Shiny application1 Outreach - Simulation of cellular senescence using an agent based modelling approach1 Simulation Foundries1 CML for thermophysical properties of mixtures1 Interface MIAPPE / BrAPI1 CF transcriptome1 miRiAD - exploring the role of microRNAs in T cell function and anti-viral defence1 ComPASs - Common Pathways in Amyotrophic Lateral Sclerosis (ALS) and Spinal Muscular Atrophy (SMA)1 LungCARD - Blood test for clinical therapy guidance of non-small cell lung cancer patients1 UnCentre - Unlocking satellite DNA and centromere structure in vertebrate chromosomes1 Unlock1 Lipofungi1 DeepHyperSpec1 Bio4Fuels1 Toggle switch1 LIGNOLIPP1 Test Project1 Mapping Disease Modules Overlaps in Biological Networks1 RDM awareness1 Perennial ryegrass1 Genetic diversity and forage yield of perennial ryegrass1 Finding interaction partners of thylakoid membrane insertase1 Characterization of P. tricornutum chloroplast protein mutants1 Working Group Nicole Radde1 MPIEvolBio-SciComp1 MRRDEP1 Acetyl-coa production in Pseudomonas putida1 Biomics Projects1 Thrust C21 CEPOPA - Development of sustainable chemoenzymatic processes for optically pure amines from alcohols or alkynes1 Testing FairdomHub functionality1 Study of Pleiomorphic Ensembles1 Reduce Complexity (RCO) reconstruction1 Model Driven Prime Editing1 PULSE 2.01 Plant optogenetics1 Hidden project1 BiocompUP Test Project1 Ultreia1 Hidden project 21 Towards a mechanistic understanding of von Hippel-Lindau syndrome in different tissues1 The Beer Project1 MPW-Val1 ADAPT - Accelerated Development of multiple-stress tolerAnt PoTato1 Backup Transcriptomic data1 MIT SRP1 Consensus Hallmark Annotation1 C19DM - Macrophage logical model1 Test Project (dummy)1 Translational Bioinformatics1 Medical Biometry, Epidemiology, Medical Informatics1 An overview of systematic reviews of treatment of polycystic ovary syndrome with Chinese medicine1 Thermodynamics1 Non equilibrium thermodynamics1 Book on Thermodynamics, and kinetics1 Towards Reproducible Enzyme Modeling1 Supplemental Data for "Why did the eyewall replacement cycle in Trami terminate rapidly? "1 Scalp Acupuncture and Treadmill Training Inhibits Neuronal Apoptosis Through Activating cIAP1 in Cerebral Ischemia Rats1 Hello1 Clostridium beijerinckii pan-genome1 Establishing an innovative and transnational feed production approach for reduced climate impact of the aquaculture sector and future food supply1 Bio-crop1 ORHIZON1 Coastal Data1 Electroacupuncture preconditioning reduces oxidative stress in the acute phase of cerebral ischemia-reperfusion in rats by regulating iron metabolism pathways1 _p_RNAinVAL1 hybrid sequencing1 Teaching Alien Biology1 HOST-PAR1 Outdated material1 The Effect of Nape Acupuncture Combined with Rehabilitation Training on Dysphagia After Stroke: A Meta-analysis1 BioCreative VII1 tst1 tst21 Boolean modeling of Parkinson disease map1 Aneurinibacillus thermoaerophilus CCM 8960 metabolic pathways model1 Orphan cytochrome P450 20a1 CRISPR/Cas9 mutants and neurobehavioral phenotypes in zebrafish1 AGENSI1 Selective Destruction in Ageing1 Viral Metagenomic1 Overexpression of microRNAs miR-25-3p, miR-185-5p and miR-132-3p in Late Onset Fetal Growth Restriction, Validation of Results and Study of the Biochemical Pathways Involved1 Public project1 JUANGMC1 Synthetic biology in Synechococcus for bioeconomy applications (SynEco)1 testproject1 Test project1 Comparative Proteome Profile of Placental Sub-anatomical regions1 Fusion-fission-mitophagy1 PHENET1 LiceVault1 Testing tools for research data management1 UMRPégase1 Investigation of the activity of antisense oligonucleotides targeting multiple genes1 DeCipher1 middle ear1 datamgmt1 MultiDefence - sLoLa1 Institut Pasteur's projects1 The nucleus of Prorocentrum cordatum1 qpcr1 NL-Bioimaging FAIR Metadata Templates1 MRC-UNICORN1 Unshackling Membrane Protein Research: New Amphiphilic Copolymers for Extraction of Stable, Active Membrane Proteins1 BioDynamics1 Playground1 WG4 - Integration of R&D process-environmental studies and translation in informed whitepaper1 Test project for Sciender1 qPCR1 Artificial organelles_Pathogen digestion1 Supplementary Information 2 associated with the manuscript entitled " Label free Mass spectrometry proteomics reveals different pathways modulated in THP-1 cells infected with therapeutic failure and drug resistance Leishmania infantum clinical isolates"1 SABIO-VIS1 FAIR Functional Enrichment1 PTPN11 mutagenesis1 WP1 - Structure-activity relationships of amphiphilic copolymers1 WP2.1 - Mono-chain-end functional amphiphilic copolymers1 WP2.2 - Hetero di-chain-end functional amphiphilic copolymers1 WP2.4 - Block copolymers for tethering to surfaces1 WP2.3 - Meta-stable amphiphilic copolymers1 WP2.5 - Fusion of SMALPs1 WP2.6 - SMALPs for photosynthetic research1 WP3 - Scalability of polymer production process1 WP4 - Community engagement and technical advice1 Enzymatic biorecycling of PET (PETzyme)1 The deregulated interplay of complement system and antioxidant activity as a driver of adverse pregnancy outcomes1 Supplementary Information 2 associated with the manuscript entitled "Label free Mass spectrometry proteomics reveals different pathways modulated in THP-1 cells infected with therapeutic failure and drug resistance Leishmania infantum clinical isolates"1 iPlacenta- Placenta on a chip1 Glucose metabolism in cancer cell lines1 Pan-cancer multiSOM project1 Near Surface Wave-Coherent Measurements of Temperature and Humidity1 A Meta-Analysis of Functional Recovery of Aphasia after Stroke by Acupuncture Combined with Language Rehabilitation Training1 MetNet1 Phytoplankton phenology in the Bay of Biscay: using remote sensing to assess and raise awareness of climate change impacts on the sea1 Master-BIDS1 Endometriosis1 Vitis Data Crop1 ARAX: a web-based computational reasoning system for translational biomedicine1 I AM FRONTIER1 .1 PhD Nicotinic Acetylcholine Receptors1 Hydrocow1 SFB1361 playground1 Amaizing1 Conspicuous chloroplast with LHC‒PSI/II‒megacomplex and diverse PBPs in the marine dinoflagellate Prorocentrum cordatum1 Stochastics and bursting1 icpm-kth1 Catabolic network of the gut bacteria P. vulgatus1 SDBV/HITS1 sample project1 TestingSeek1 We learn to fairdomhub @IBG1 Beads analysis1 Genomic Medicine1 Remodeling of cIV1 Optimizing biocatalytic flow reactors via inline NMR-analysis1 PROMISEANG1 Bioreactor/Omics Phocaeicola vulgatus1 URGI1 SampleDB1 Matsutake1 UNDESIRABLE EFFECTS OF POST COVID-19 VACCINATION: A DESCRIPTIVE STUDY, WINTER 20221 Semantic Table Interpretation in Chemistry1 MS identification of L infantum proteins related to their drug resistance patterns for new drug targets identification and ecotoxicological evaluations of their environmental and interspecies impact1 the Supplementary materials for paper1 VHP project1 Japanese Data in Global Plant Research: A FAIDARE and BrAPI Project1 Measurement of Fisheries Provisioning Services and its Pressure to Support Sustainability of Fisheries in The Jatigede Reservoir, Indonesia1 FIsh data on 2022 in the Jatigede Reservoir1 ImmPort - data sharing1 REWIRED: comparative RNA-seq and ATAC-seq in six salmonids and six outgroup telest fishes1 REWIRED1 Data Repository1 ODDITY1 WATCHER1 VIALACTEA1 Group Data Science1 APPN Test Project1 Enhanced Anticancer Effect of Thymidylate Synthase Dimer Disrupters Promoting Intracellular Accumulation1 LiVE1 BIDS1 Group Microbial Interface Biology1 Core Facility Fluorescence Cytometry1 BioRECIPE representation format1 UMass Chan BioImage DMS Core_FAIR Metadata Templates1 Function, control and engineering of microbial methylotrophy1 Pectobacterium pangenome1 Proteogneomics of Desulfobacteraceae members1 The evolution of Gene Ontology1 New Optical Coherence Tomography Biomarkers Identified with Deep Learning for Risk Stratification of Patients with Age-related Macular Degeneration1 Virulence-related genes expression in planktonic mixed cultures of Candida albicans and non-albicans Candida species1 Data science Übung1 Isolieren neuer Gluconobacter Stämme1 Screening of Secondary Plant Metabolites on Antihelmintic Activity in Ascaris scum1 Project 1: Metabolic Reprogramming and Regeneration in the Aged Epidermis1 Project 2: Epigenetic regulation of skin regeneration1 Munich Cluster for Systems Neurology1 16S rRNA-Sequencing1 Mapping Regional Susceptibility to Neurodegenerative Diseases1 Test project May 20241 Biospecimen Collection Protocol1 Targeting the immunoproteasome: Analyzing the biological effects of specific versus pan inhibition1 Macrophage and neutrophil redox proteome in infection with Mycobacterium tuberculosis1 Winter Wheat (Triticum aestivum L.) Grain Yield, Quality, and Net Photosynthesis When Grown Under Semi-Transparent Cadmium Telluride Photovoltaic Modules Near Maturity1 Benefit for All FAIR Data1 Lipid droplet formation and dynamics in murine macrophages1 DPL1 Glycogen Metabolism in bacteria1 ILS Ceramide Ring Trial1 Project Test1 DeepCurate1 Revisiting mutational resistance to ampicillin and cefotaxime in Haemophilus influenzae1 CropXR1 DataXR1 Cancer Systems Biology Consortium (CSBC)1 Biochemical characterization of the feedforward loop between CDK1 and FOXM1 in epidermal stem cells1 Drug Discovery and Biotechnology Standard Operating Procedures1 Fluid flow project1 Smart Garden Watering System1 The role of different fatty acids1 AQUACIRCLE1 IDIM1 Sampling vicinity of industrial settings for pathogens and GMO identification1 Uni Heidelberg URZ-Demo Project1 BlueTools Test1 RNA-seq data for paper1 RNA-seq data1 More...

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