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Genbank file for the L.ferriphilum chromosome, annotated with prokka 1.12beta

Table combining data for L.ferriphilum. RNAseq data, Proteomics LFQs, Functional annotation

Comparison between axenic and planktonic readcounts with deseq2

Comparison for LFQs with t-test in Perseus

Raw read files for samples

Normalized counts (tpm) for LF samples with mineral

Normalized counts (tpm) for L.ferriphilum samples from continuous culture.

Repository for omics data analysis

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incubations with yeast enzymes at 30C

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metabolite quantification via enzymatic analysis

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PGK yeast without recycling of ATP

PGK yeast with recycling of ATP

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Creator: Theresa Kouril

Submitter: Theresa Kouril

Supplementary file required by main Zip archive file for file extraction.

Cells of S. solfataricus were grown on either caseinhydrolysate or D-glucose (reference) as sole carbon source.

The distribution of enzymes involved in oxidative Stickland reactions among archaea was estimated using BLAST searches (BLOSUM62) with the protein sequences of acetate-CoA ligase (EC 6.2.1.13, ACS), ketoisovalerate oxidoreductase (EC 1.2.7.7, BC-OR) and indolepyruvate oxdoreductase (EC 1.2.7.8, AR-OR) from Pyrococcus furiosus (Pfu) and Sulfolobus solfataricus (Sso) against all archaea. Positive results are indicated by a '+' (homologue found, e-value < 1e-20) and negative results by a '-' (no ...

The calculation of amino acid uptake rates for cells of Sulfolobus solfataricus P2 grown on caseinhydrolysate was performed based on the relative consumption of individual amino acids from the growth medium and the previously published absolute concentration of amino acids in the used growth medium.

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