Quarto document with R code for transcriptome profiling, including input files, result figures and HTML report
SEEK ID: https://fairdomhub.org/data_files/7790?version=2
Filename:
transcriptome_profiling.zip
Format: Zip file
Size: 85 MB
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Views: 20 Downloads: 6
Created: 23rd Apr 2025 at 21:03
Last updated: 19th Dec 2025 at 13:02
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Version 3 (latest) Created 27th Oct 2025 at 14:42 by Inken Wohlers
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Version 2 Created 27th Oct 2025 at 14:38 by Inken Wohlers
Small bug fix, two PDF figures did not render correctly.
Version 1 (earliest) Created 23rd Apr 2025 at 21:03 by Inken Wohlers
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Projects: Group Data Science, Group Microbial Interface Biology, Core Facility Fluorescence Cytometry, Targeting the immunoproteasome: Analyzing the biological effects of specific versus pan inhibition, Macrophage and neutrophil redox proteome in infection with Mycobacterium tuberculosis, Methylation differences during respiratory infection, Lipid droplet formation and dynamics in murine macrophages, Implementation of Nanopore Sequencing for Detection of Treatment Induced Transcriptomic and Epitranscriptomic Changes in Leukaemic Tumour Models, Revisiting mutational resistance to ampicillin and cefotaxime in Haemophilus influenzae, OMICS of vascular smooth muscle cells under oxidative stress, Systems genetics of lung health and asthma (GWAS, PGS, QTL), Archaean stimulation of human primary PBMCs and PBMCs monocytes
Institutions: Forschungszentrum Borstel
https://orcid.org/0000-0003-4004-0464
The FZB is the lung research center of the Leibniz Association and is therefore committed to the motto “theoria cum praxi”.
The FZB sees its scientific and socio-political task in basic, disease- and patient-oriented lung research and training in this field. The field of research includes chronic inflammatory diseases of the lung of infectious and non-infectious environmental and behavioral origin. Research focuses on tuberculosis, infections with non-tuberculous mycobacteria and other bacterial ...
Projects: Group Data Science, Group Microbial Interface Biology, Core Facility Fluorescence Cytometry, Targeting the immunoproteasome: Analyzing the biological effects of specific versus pan inhibition, Macrophage and neutrophil redox proteome in infection with Mycobacterium tuberculosis, Methylation differences during respiratory infection, Lipid droplet formation and dynamics in murine macrophages, OMICS of vascular smooth muscle cells under oxidative stress, Systems genetics of lung health and asthma (GWAS, PGS, QTL), Archaean stimulation of human primary PBMCs and PBMCs monocytes
Web page: https://fz-borstel.de
Programme: Research Center Borstel
Public web page: Not specified
Submitter: Inken Wohlers
Investigation: Illumina RNA Sequencing
Submitter: Inken Wohlers
Biological problem addressed: Model Analysis Type
Investigation: Illumina RNA Sequencing
Study: Transcriptome profiling
