output/network/correlations_per_family.txt Version 1
_p_SUSPHIRE/_I_T31_mealybug/_S_P4_AdPathGenes/_A_01-CoEXpNetViz_tr2-coexpr/
SEEK ID: https://fairdomhub.org/data_files/5957?version=1
Filename:
output/network/correlations_per_family.txt
Format: Plain text document
Size: 18.8 KB
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bait gene correlation node_75662_length_1126_cov_1057 node_41468_length_2350_cov_18 -0.853838 node_43099_length_2272_cov_21 bait gene correlation node_75662_length_1126_cov_1057 node_43099_length_2272_cov_21 -0.836404 node_43458_length_2254_cov_31 bait gene correlation node_75662_length_1126_cov_1057 node_43458_length_2254_cov_31 -0.846351 node_43889_length_2232_cov_4172 bait gene correlation node_75662_length_1126_cov_1057 node_43889_length_2232_cov_4172 0.893929 node_44040_length_2225_cov_4174 bait gene correlation node_75662_length_1126_cov_1057 node_44040_length_2225_cov_4174 0.893855 node_49610_length_1978_cov_26 bait gene correlation node_75662_length_1126_cov_1057 node_49610_length_1978_cov_26 -0.881081 node_4989_length_7405_cov_684 bait gene correlation node_75662_length_1126_cov_1057 node_4989_length_7405_cov_684 0.865233 node_50062_length_1959_cov_99 bait gene correlation node_75662_length_1126_cov_1057 node_50062_length_1959_cov_99 -0.849703 node_50258_length_1950_cov_4940 bait gene correlation node_75662_length_1126_cov_1057 node_50258_length_1950_cov_4940 0.889002 node_50792_length_1927_cov_4648 bait gene correlation node_75662_length_1126_cov_1057 node_50792_length_1927_cov_4648 0.898791 node_5085_length_7351_cov_687 bait gene correlation node_75662_length_1126_cov_1057 node_5085_length_7351_cov_687 0.869011 node_51075_length_1915_cov_214 bait gene correlation node_75662_length_1126_cov_1057 node_51075_length_1915_cov_214 -0.838776 node_52967_length_1841_cov_105 bait gene correlation node_75662_length_1126_cov_1057 node_52967_length_1841_cov_105 -0.842075 node_52996_length_1839_cov_15015 bait gene correlation node_75662_length_1126_cov_1057 node_52996_length_1839_cov_15015 0.871625 node_53515_length_1819_cov_3103 bait gene correlation node_75662_length_1126_cov_1057 node_53515_length_1819_cov_3103 0.846693 node_53689_length_1813_cov_318 bait gene correlation node_75662_length_1126_cov_1057 node_53689_length_1813_cov_318 -0.859159 node_54339_length_1789_cov_109 bait gene correlation node_75662_length_1126_cov_1057 node_54339_length_1789_cov_109 -0.851732 node_55270_length_1751_cov_149 bait gene correlation node_75662_length_1126_cov_1057 node_55270_length_1751_cov_149 0.871151 node_56140_length_1719_cov_328 bait gene correlation node_75662_length_1126_cov_1057 node_56140_length_1719_cov_328 -0.893727 node_56730_length_1697_cov_114 bait gene correlation node_75662_length_1126_cov_1057 node_56730_length_1697_cov_114 -0.848762 node_57097_length_1684_cov_7 bait gene correlation node_75662_length_1126_cov_1057 node_57097_length_1684_cov_7 -0.880756 node_58286_length_1643_cov_2039 bait gene correlation node_75662_length_1126_cov_1057 node_58286_length_1643_cov_2039 0.864881 node_60265_length_1575_cov_1363 bait gene correlation node_75662_length_1126_cov_1057 node_60265_length_1575_cov_1363 0.862586 node_60707_length_1560_cov_1783 bait gene correlation node_75662_length_1126_cov_1057 node_60707_length_1560_cov_1783 -0.848212 node_61342_length_1540_cov_2477 bait gene correlation node_75662_length_1126_cov_1057 node_61342_length_1540_cov_2477 0.895839 node_62113_length_1515_cov_4478 bait gene correlation node_75662_length_1126_cov_1057 node_62113_length_1515_cov_4478 0.863089 node_63007_length_1487_cov_872 bait gene correlation node_75662_length_1126_cov_1057 node_63007_length_1487_cov_872 -0.847551 node_63221_length_1480_cov_256 bait gene correlation node_75662_length_1126_cov_1057 node_63221_length_1480_cov_256 -0.89313 node_66376_length_1379_cov_1621 bait gene correlation node_75662_length_1126_cov_1057 node_66376_length_1379_cov_1621 0.866694 node_67007_length_1361_cov_292 bait gene correlation node_75662_length_1126_cov_1057 node_67007_length_1361_cov_292 -0.887363 node_68332_length_1323_cov_9 bait gene correlation node_75662_length_1126_cov_1057 node_68332_length_1323_cov_9 -0.865665 node_72375_length_1211_cov_1051 bait gene correlation node_75662_length_1126_cov_1057 node_72375_length_1211_cov_1051 0.893874 node_74074_length_1166_cov_22 bait gene correlation node_75662_length_1126_cov_1057 node_74074_length_1166_cov_22 -0.863781 node_75061_length_1140_cov_1184 bait gene correlation node_75662_length_1126_cov_1057 node_75061_length_1140_cov_1184 0.88132 node_7570_length_6286_cov_1051 bait gene correlation node_75662_length_1126_cov_1057 node_7570_length_6286_cov_1051 0.878434 node_7762_length_6216_cov_288 bait gene correlation node_75662_length_1126_cov_1057 node_7762_length_6216_cov_288 0.865181 node_7796_length_6207_cov_289 bait gene correlation node_75662_length_1126_cov_1057 node_7796_length_6207_cov_289 0.86201 node_7797_length_6207_cov_289 bait gene correlation node_75662_length_1126_cov_1057 node_7797_length_6207_cov_289 0.871514 node_79299_length_1039_cov_165 bait gene correlation node_75662_length_1126_cov_1057 node_79299_length_1039_cov_165 0.849436 node_81133_length_999_cov_310 bait gene correlation node_75662_length_1126_cov_1057 node_81133_length_999_cov_310 0.887075 node_90020_length_836_cov_93 bait gene correlation node_75662_length_1126_cov_1057 node_90020_length_836_cov_93 -0.886005 node_9186_length_5800_cov_45 bait gene correlation node_75662_length_1126_cov_1057 node_9186_length_5800_cov_45 0.863533
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Created: 16th May 2022 at 12:10
Last updated: 6th Nov 2024 at 15:25
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Version 1 (earliest) Created 16th May 2022 at 12:10 by Marko Petek
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Related items
https://orcid.org/0000-0003-3644-7827PhD in Biotechnology, Research Associate at Department of Biotechnology and Systems Biology, National Institute of Biology
National Institute of Biology, Department of Biotechnology and Systems Biology projects
Projects: HYp - Spatiotemporal analysis of hypersensitive response to Potato virus Y in potato, pISA-tree, MOA - Multiomics analysis of potato response to Potato virus Y (PVY) infection, SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture, INDIE - Biotechnological production of sustainable indole, _p_stRT, ADAPT - Accelerated Development of multiple-stress tolerAnt PoTato, _p_RNAinVAL, tst, tst2, Playground
Web page: http://www.nib.si/eng/index.php/departments/department-of-biotechnology-and-systems-biology
SUSPHIRE aims to provide a sustainable, low-cost biomanufacturing platform for the commercial production of insect pheromones.
Synthetic biology data management spreadsheet: https://fairdomhub.org/data_files/6036
Programme: NIBSys
Public web page: http://susphire.info/susphireproject/
Start date: 1st Apr 2018
End date: 30th Sep 2021
Short Name: T31_mealybug Title: Mealybug genome and transcriptome analyses Description: Searching for enzymes involved in the mealybug pheromone biosynthesis pathways. These pheromones are known to be released by virgin females. Phenodata: ./phenodata_20190523.txt Featuredata: Principal investigator: Heribert Warzecha, Špela Baebler License: Creative Commons Attribution 4.0 Sharing permission: Private Upload to FAIRDOMHub: Yes
Submitter: Marko Petek
Studies: Investigation files, _S_P3_expressionEcoli, _S_P4_AdPathGenes, _S_P4_Pcitri_IsoSeq, _S_P4_Pcitri_genome, _S_P4_Pcitri_genome_extSamples, _S_P4_Pcitri_tr1, _S_P4_Pcitri_tr1tr2combo, _S_P4_Pcitri_tr2, _S_P4_cand_all, _S_P4_cand_genomic
Assays: _A_01-CoEXpNetViz_tr2-coexpr, _A_01_NGI-IsoSeq, _A_01_RNAseq-CLC, _A_01_assembly2-rnaSPAdes, _A_01_mapToGenomeAll-STAR, _A_01_renameFASTA-Bioinfo, _A_02-CoEXpNetViz_gen-coexpr, _A_02_CDHIT-Bioinfo, _A_02_assembly2-IPS, _A_02_cDNAcupcake-dry, _A_02_limma-R, _A_02_mapToGenomeAll_limma-R, _A_03-IPS, _A_03_CDHIT2-Bioinfo, _A_03_limma_min50counts-R, _A_03_mapAs2ToGenome-STAR, _A_04_limma_min10counts-R, _A_04_mapIllumina-STAR, _A_04_mapReadsToAs2-STAR, _A_05_As2_tr_limmaDE-R, _A_05_DE_limma-R, _A_05_assembly1-rnaSPAdes, _A_06_assembly1-IPS, _A_07_mapAs1ToGenome-STAR, _A_08_mapReadsToAs1-STAR, _A_09_As1_tr_limmaDE-R, _A_C98F-EcoliExpr, _A_IDIsearch-Bioinfo, _A_IPS-bioinfo, _A_MAST-bioinfo, _A_MEME-bioinfo, _A_MSA-bioinfo, _A_MeUppS-EcoliExpr, _A_Node14610-EcoliExpr, _A_Node14610DmTP-EcoliExpr, _A_OtherMealybugCandidates-Alignment, _A_Pc1599-EcoliExpr, _A_Pc23180-EcoliExpr, _A_Pc2704-EcoliExpr, _A_Pc32607-EcoliExpr, _A_Pc7366II-EcoliExpr, _A_PcCis24-EcoliExpr, _A_Strep_CLDS-bioinfo, _A_TPS_phy-bioinfo, _A_Terzyme-bioinfo, _A_Trans1153-EcoliExpr, _A_Trans2-EcoliExpr, _A_Trans39-EcoliExpr, _A_Trans57-EcoliExpr, _A_Trans64-EcoliExpr, _A_Trans94-EcoliExpr, _A_candidatemining-bioinfo, _A_g14825_recon-bioinfo, _A_smallIDSsubunit-motifs, _I_T31_mealybug-files, _S_P3_expressionEcoli-files, _S_P4_AdPathGenes-files, _S_P4_Pcitri_IsoSeq-files, _S_P4_Pcitri_genome-files, _S_P4_Pcitri_genome_extSamples-files, _S_P4_Pcitri_tr1-files, _S_P4_Pcitri_tr1tr2combo-files, _S_P4_Pcitri_tr2-files, _S_P4_cand_all-files, _S_P4_cand_genomic-files
Short Name: P4_AdPathGenes Title: Additional search for genes involved in P citri sex pheromone production pathway Description: Search for additional pathway genes using coexpression etc Raw Data: Principal investigator: Špela Baebler License: Creative Commons Attribution 4.0 Sharing permission: Private Upload to FAIRDOMHub: Yes
Submitter: Marko Petek
Investigation: _I_T31_mealybug
Assays: _A_01-CoEXpNetViz_tr2-coexpr, _A_02-CoEXpNetViz_gen-coexpr, _S_P4_AdPathGenes-files
Short Name: 01-CoEXpNetViz_tr2-coexpr Assay Class: DRY Assay Type: coexpr Title: Using CoEXpNetViz to search P citri de novo tr2 Description: We used bait genes of mevalonate pathway to try to find other pathway members pISA Assay creation date: 2019-11-21 pISA Assay creator: Marko Petek Phenodata: ../../phenodata_20190523.txt Featuredata: Data:
Submitter: Marko Petek
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_T31_mealybug
Study: _S_P4_AdPathGenes
