input/params.txt

Version 1

Command line: /home/administrator/Software/SPAdes-3.13.1-Linux/bin/spades.py	--only-error-correction	-m	230	-t	32	-o	/DATA/markop/Pcitri_rnaspades_alldata/input	--pe1-fr	--pe2-fr	--pe3-fr	--pe1-12	/DATA/markop/Pcitri_rnaspades_alldata/input/SUSPHIRE_filtered.fastq	--pe2-12	/DATA/markop/Pcitri_rnaspades_alldata/input/Edinburgh50_filtered.fastq	--pe3-12	/DATA/markop/Pcitri_rnaspades_alldata/input/Edinburgh75_filtered.fastq	

System information:
  SPAdes version: 3.13.1
  Python version: 2.7.12
  OS: Linux-4.13.0-41-generic-x86_64-with-LinuxMint-18.2-sonya

Output dir: /DATA/markop/Pcitri_rnaspades_alldata/input
Mode: ONLY read error correction (without assembling)
Debug mode is turned OFF

Dataset parameters:
  Multi-cell mode (you should set '--sc' flag if input data was obtained with MDA (single-cell) technology or --meta flag if processing metagenomic dataset)
  Reads:
    Library number: 1, library type: paired-end
      orientation: fr
      left reads: not specified
      right reads: not specified
      interlaced reads: ['/DATA/markop/Pcitri_rnaspades_alldata/input/SUSPHIRE_filtered.fastq']
      single reads: not specified
      merged reads: not specified
    Library number: 2, library type: paired-end
      orientation: fr
      left reads: not specified
      right reads: not specified
      interlaced reads: ['/DATA/markop/Pcitri_rnaspades_alldata/input/Edinburgh50_filtered.fastq']
      single reads: not specified
      merged reads: not specified
    Library number: 3, library type: paired-end
      orientation: fr
      left reads: not specified
      right reads: not specified
      interlaced reads: ['/DATA/markop/Pcitri_rnaspades_alldata/input/Edinburgh75_filtered.fastq']
      single reads: not specified
      merged reads: not specified
Read error correction parameters:
  Iterations: 1
  PHRED offset will be auto-detected
  Corrected reads will be compressed
Other parameters:
  Dir for temp files: /DATA/markop/Pcitri_rnaspades_alldata/input/tmp
  Threads: 32
  Memory limit (in Gb): 230