phenodata_20190523.txt Version 1
_p_SUSPHIRE/_I_T31_mealybug/
SEEK ID: https://fairdomhub.org/data_files/5769?version=1
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phenodata_20190523.txt
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SampleID SampleAlias SampleAlias2 CustomerRef Organism Stage Sex Status RNA-seq_library RNA-seq_platform RNA-seq_readLength DataSource _A_exp1-RNAisol _A_RNAseq-CLC _A_limma-R _A_limma_min50counts-R _A_limma_min10counts-R _A_assembly1-rnaSPAdes _A_assembly2-rnaSPAdes _A_01_NGI-IsoSeq _A_02_cDNAcupcake-dry _A_03-IPS _A_04_mapIllumina-STAR _A_05_DE_limma-R _A_02_mapToGenomeAll_limma-R SAM44184 PRO1976_S1 SVF02 VF_2 Planococcus_citri adult females virgin TruSeq_mRNA_stranded NovaSeq6000 150PE SUSPHIRE 1 1 1 1 1 1 1 1 1 1 SAM44185 PRO1976_S2 SVF03 VF_3 Planococcus_citri adult females virgin TruSeq_mRNA_stranded NovaSeq6000 150PE SUSPHIRE 1 1 1 1 1 1 1 1 1 1 SAM44186 PRO1976_S3 SVF05 VF_5 Planococcus_citri adult females virgin TruSeq_mRNA_stranded NovaSeq6000 150PE SUSPHIRE 1 1 1 1 1 1 1 1 1 1 SAM44187 PRO1976_S4 SVF06 VF_6 Planococcus_citri adult females virgin TruSeq_mRNA_stranded NovaSeq6000 150PE SUSPHIRE 1 1 1 1 1 1 1 1 1 1 SAM44188 PRO1976_S5 SMF08 MF_8 Planococcus_citri adult females mated TruSeq_mRNA_stranded NovaSeq6000 150PE SUSPHIRE 1 1 1 1 1 1 1 1 1 SAM44189 PRO1976_S6 SMF09 MF_9 Planococcus_citri adult females mated TruSeq_mRNA_stranded NovaSeq6000 150PE SUSPHIRE 1 1 1 1 1 1 1 1 1 SAM44190 PRO1976_S7 SMF10 MF_10 Planococcus_citri adult females mated TruSeq_mRNA_stranded NovaSeq6000 150PE SUSPHIRE 1 1 1 1 1 1 1 1 1 SAM44191 PRO1976_S8 SMF11 MF_11 Planococcus_citri adult females mated TruSeq_mRNA_stranded NovaSeq6000 150PE SUSPHIRE 1 1 1 1 1 1 1 1 1 170602_K00166_0222_BHJW3HBBXX_1_TP-D7-012_TP-D5-005 EALL1 PC_ALL_1 Planococcus_citri all_stages mixed NA TruSeq_mRNA_stranded HiSeq4000 75PE Edinburgh 1 1 1 1 170602_K00166_0222_BHJW3HBBXX_1_TP-D7-011_TP-D5-005 EF1 PC_F_1 Planococcus_citri adult females NA TruSeq_mRNA_stranded HiSeq4000 75PE Edinburgh 1 1 1 1 180321_A00291_0014_BH5N2HDMXX_2_11284RL0013L01 EF2 PC_F_2 Planococcus_citri adult females NA TruSeq_mRNA_stranded NovaSeqS2 50PE Edinburgh 1 1 1 1 180321_A00291_0014_BH5N2HDMXX_2_11284RL0014L02 EF3 PC_F_3 Planococcus_citri adult females NA TruSeq_mRNA_stranded NovaSeqS2 50PE Edinburgh 1 1 1 1 170602_K00166_0222_BHJW3HBBXX_1_TP-D7-011_TP-D5-006 EM1 PC_M_1 Planococcus_citri adult males NA TruSeq_mRNA_stranded HiSeq4000 75PE Edinburgh 1 1 1 1 180321_A00291_0014_BH5N2HDMXX_2_11284RL0015L01 EM2 PC_M_2 Planococcus_citri adult males NA TruSeq_mRNA_stranded NovaSeqS2 50PE Edinburgh 1 1 1 1 180321_A00291_0014_BH5N2HDMXX_2_11284RL0016L01 EM3 PC_M_3 Planococcus_citri adult males NA TruSeq_mRNA_stranded NovaSeqS2 50PE Edinburgh 1 1 1 1 170602_K00166_0222_BHJW3HBBXX_1_TP-D7-012_TP-D5-006 PF_F_1 Planococcus_ficus adult females NA TruSeq_mRNA_stranded HiSeq4000 75PE Edinburgh 170602_K00166_0222_BHJW3HBBXX_1_TP-D7-010_TP-D5-001 PF_M_1 Planococcus_ficus adult males NA TruSeq_DNA_nano_350_bp HiSeq4000 75PE Edinburgh SRR848068 Planococcus_citri adult NA NA NA HiSeq2000 100PE SRA 1 SRR921633 Planococcus_citri adult NA NA EST HiSeq2000 150PE SRA 1 SRR3239563 Planococcus_citri adult females NA NA HiSeq2500 125PE SRA 1 VF_mix pt_025 Planococcus_citri adult females virgin Iso-Seq PacBio Sequel II var SUSPHIRE 1 1 1 1 1
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Created: 16th May 2022 at 10:26
Last updated: 6th Nov 2024 at 15:25
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Version 1 (earliest) Created 16th May 2022 at 10:26 by Marko Petek
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https://orcid.org/0000-0003-3644-7827PhD in Biotechnology, Research Associate at Department of Biotechnology and Systems Biology, National Institute of Biology
National Institute of Biology, Department of Biotechnology and Systems Biology projects
Projects: HYp - Spatiotemporal analysis of hypersensitive response to Potato virus Y in potato, pISA-tree, MOA - Multiomics analysis of potato response to Potato virus Y (PVY) infection, SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture, INDIE - Biotechnological production of sustainable indole, _p_stRT, ADAPT - Accelerated Development of multiple-stress tolerAnt PoTato, _p_RNAinVAL, tst, tst2, Playground
Web page: http://www.nib.si/eng/index.php/departments/department-of-biotechnology-and-systems-biology
SUSPHIRE aims to provide a sustainable, low-cost biomanufacturing platform for the commercial production of insect pheromones.
Synthetic biology data management spreadsheet: https://fairdomhub.org/data_files/6036
Programme: NIBSys
Public web page: http://susphire.info/susphireproject/
Start date: 1st Apr 2018
End date: 30th Sep 2021
Short Name: T31_mealybug Title: Mealybug genome and transcriptome analyses Description: Searching for enzymes involved in the mealybug pheromone biosynthesis pathways. These pheromones are known to be released by virgin females. Phenodata: ./phenodata_20190523.txt Featuredata: Principal investigator: Heribert Warzecha, Špela Baebler License: Creative Commons Attribution 4.0 Sharing permission: Private Upload to FAIRDOMHub: Yes
Submitter: Marko Petek
Studies: Investigation files, _S_P3_expressionEcoli, _S_P4_AdPathGenes, _S_P4_Pcitri_IsoSeq, _S_P4_Pcitri_genome, _S_P4_Pcitri_genome_extSamples, _S_P4_Pcitri_tr1, _S_P4_Pcitri_tr1tr2combo, _S_P4_Pcitri_tr2, _S_P4_cand_all, _S_P4_cand_genomic
Assays: _A_01-CoEXpNetViz_tr2-coexpr, _A_01_NGI-IsoSeq, _A_01_RNAseq-CLC, _A_01_assembly2-rnaSPAdes, _A_01_mapToGenomeAll-STAR, _A_01_renameFASTA-Bioinfo, _A_02-CoEXpNetViz_gen-coexpr, _A_02_CDHIT-Bioinfo, _A_02_assembly2-IPS, _A_02_cDNAcupcake-dry, _A_02_limma-R, _A_02_mapToGenomeAll_limma-R, _A_03-IPS, _A_03_CDHIT2-Bioinfo, _A_03_limma_min50counts-R, _A_03_mapAs2ToGenome-STAR, _A_04_limma_min10counts-R, _A_04_mapIllumina-STAR, _A_04_mapReadsToAs2-STAR, _A_05_As2_tr_limmaDE-R, _A_05_DE_limma-R, _A_05_assembly1-rnaSPAdes, _A_06_assembly1-IPS, _A_07_mapAs1ToGenome-STAR, _A_08_mapReadsToAs1-STAR, _A_09_As1_tr_limmaDE-R, _A_C98F-EcoliExpr, _A_IDIsearch-Bioinfo, _A_IPS-bioinfo, _A_MAST-bioinfo, _A_MEME-bioinfo, _A_MSA-bioinfo, _A_MeUppS-EcoliExpr, _A_Node14610-EcoliExpr, _A_Node14610DmTP-EcoliExpr, _A_OtherMealybugCandidates-Alignment, _A_Pc1599-EcoliExpr, _A_Pc23180-EcoliExpr, _A_Pc2704-EcoliExpr, _A_Pc32607-EcoliExpr, _A_Pc7366II-EcoliExpr, _A_PcCis24-EcoliExpr, _A_Strep_CLDS-bioinfo, _A_TPS_phy-bioinfo, _A_Terzyme-bioinfo, _A_Trans1153-EcoliExpr, _A_Trans2-EcoliExpr, _A_Trans39-EcoliExpr, _A_Trans57-EcoliExpr, _A_Trans64-EcoliExpr, _A_Trans94-EcoliExpr, _A_candidatemining-bioinfo, _A_g14825_recon-bioinfo, _A_smallIDSsubunit-motifs, _I_T31_mealybug-files, _S_P3_expressionEcoli-files, _S_P4_AdPathGenes-files, _S_P4_Pcitri_IsoSeq-files, _S_P4_Pcitri_genome-files, _S_P4_Pcitri_genome_extSamples-files, _S_P4_Pcitri_tr1-files, _S_P4_Pcitri_tr1tr2combo-files, _S_P4_Pcitri_tr2-files, _S_P4_cand_all-files, _S_P4_cand_genomic-files
Investigation files _I_T31_mealybug
Files connected to investigation: _I_T31_mealybug
Submitter: Marko Petek
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_T31_mealybug
Study: Investigation files
