input/01_CKN_prioritization_low1-wt.txt Version 1
_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_DiNAR/_A_CKN-DiNAR/
SEEK ID: https://fairdomhub.org/data_files/5108?version=1
Filename:
input/01_CKN_prioritization_low1-wt.txt
Format: Plain text document
Size: 188 KB
probeID clade LogFC_l1.wt pAdj_l1.wt g100135 AT1G01030 -0.22 0.8541 g549 AT1G01040 0.52 0.8268 g123473 AT1G01090 0.17 0.8578 g99233 AT1G01120 0.28 0.8871 g78308 AT1G01200 -0.24 0.9001 g73601 AT1G01230 -0.21 0.8268 g59882 AT1G01300 -0.01 0.9974 g78359 AT1G01320 0.48 0.8477 g59819 AT1G01360 -0.25 0.885 g78528 AT1G01470 -0.85 0.8268 g83373 AT1G01490 -0.48 0.8504 g110078 AT1G01490 0.04 0.9895 g15497 AT1G01540 0.07 0.9702 g78540 AT1G01560 0 0.9984 g71563 AT1G01610 0.37 0.8899 g52838 AT1G01620 -0.42 0.8268 g52324 AT1G01630 -0.44 0.8428 g73365 AT1G01650 1.57 0.8268 g101115 AT1G01720 0.46 0.832 g99460 AT1G01800 -0.12 0.9469 g71785 AT1G01820 -0.62 0.8268 g71774 AT1G01840 -0.01 0.9974 g59388 AT1G01900 -0.39 0.8488 g59378 AT1G01910 0.17 0.8438 g12017 AT1G01910 -0.17 0.9003 g59278 AT1G01930 0.21 0.8268 g59256 AT1G01970 -0.18 0.8651 g73057 AT1G02000 0.11 0.9474 g61820 AT1G02120 0.17 0.8788 g95357 AT1G02140 0.25 0.8478 g61877 AT1G02150 0.03 0.9901 g61623 AT1G02170 -0.14 0.9817 g61996 AT1G02205 0.16 0.943 g95267 AT1G02260 0.32 0.8268 g117163 AT1G02305 0.14 0.9771 g77381 AT1G02370 0.28 0.832 g54527 AT1G02420 0.2 0.8842 g77313 AT1G02460 0.11 0.9463 g6562 AT1G02500 -0.18 0.9001 g9607 AT1G02560 -0.28 0.8433 g124445 AT1G02620 -0.01 0.9988 g79089 AT1G02660 -0.52 0.8268 g79125 AT1G02730 -0.01 0.9953 g25297 AT1G02840 -0.49 0.8268 g13209 AT1G02850 -0.15 0.9162 g79984 AT1G02910 -0.21 0.9045 g90041 AT1G02980 0.02 0.9887 g119581 AT1G03000 -0.02 0.9893 g63242 AT1G03010 0.28 0.854 g47209 AT1G03080 0.29 0.8461 g93628 AT1G03130 -0.19 0.9753 g12969 AT1G03150 -0.46 0.8268 g79424 AT1G03160 0.02 0.9942 g81985 AT1G03210 -0.15 0.9062 g79477 AT1G03310 0.07 0.9588 g94873 AT1G03400 -0.07 0.982 g48575 AT1G03430 -0.21 0.8985 g63521 AT1G03457 -0.03 0.9881 g7532 AT1G03475 -0.32 0.8804 g21884 AT1G03520 -0.06 0.9384 g21867 AT1G03550 -0.15 0.9413 g29598 AT1G03600 -0.34 0.9461 g71494 AT1G03630 0.06 0.9942 g29721 AT1G03750 0.06 0.9609 g14109 AT1G03800 -0.28 0.8478 g106060 AT1G03870 0.3 0.9462 g119539 AT1G03900 -0.03 0.9913 g6782 AT1G03930 0.02 0.9917 g18984 AT1G03940 1.37 0.8268 g119525 AT1G04020 0.37 0.8438 g26809 AT1G04020 0.8 0.8268 g6823 AT1G04030 0.07 0.9708 g6846 AT1G04080 0.08 0.9143 g13287 AT1G04110 -0.76 0.8268 g46545 AT1G04120 0.19 0.8665 g33281 AT1G04140 -0.08 0.9126 g27589 AT1G04170 -0.23 0.9684 g48146 AT1G04200 0.1 0.9312 g17809 AT1G04220 -0.36 0.8268 g85324 AT1G04250 0.96 0.8542 g25407 AT1G04270 -0.15 0.9034 g115445 AT1G04290 0.19 0.863 g64297 AT1G04330 -0.08 0.9931 g78787 AT1G04390 0.02 0.9938 g63691 AT1G04400 0.33 0.8268 g44666 AT1G04420 -0.24 0.8704 g11222 AT1G04520 0.23 0.9013 g80488 AT1G04590 -0.5 0.8268 g11105 AT1G04620 -0.04 0.9776 g15185 AT1G04640 -0.18 0.8449 g64119 AT1G04700 -0.11 0.9389 g64155 AT1G04770 -0.76 0.8303 g64149 AT1G04780 -0.32 0.8268 g64804 AT1G04840 0.17 0.885 g64778 AT1G04880 0.57 0.8268 g79836 AT1G04920 -0.22 0.9059 g125289 AT1G04940 -0.23 0.8559 g31353 AT1G04950 -0.54 0.8268 g42726 AT1G04980 -0.1 0.9341 g105752 AT1G05000 0.07 0.9745 g87268 AT1G05000 -0.19 0.9001 g87268 AT1G05000 -0.19 0.9001 g87268 AT1G05000 -0.19 0.9001 g87268 AT1G05000 -0.19 0.9001 g14102 AT1G05010 -0.44 0.885 g42774 AT1G05030 0.18 0.832 g114832 AT1G05120 1.55 0.8268 g105638 AT1G05170 -0.11 0.9389 g52131 AT1G05190 -0.22 0.9451 g114822 AT1G05200 0.7 0.8268 g88964 AT1G05385 -0.19 0.9111 g3848 AT1G05460 0.17 0.889 g14737 AT1G05500 -0.11 0.9096 g14737 AT1G05500 -0.11 0.9096 g14737 AT1G05500 -0.11 0.9096 g14737 AT1G05500 -0.11 0.9096 g1403 AT1G05570 0.26 0.8544 g1438 AT1G05590 -0.02 0.9884 g93031 AT1G05620 -0.09 0.9285 g51308 AT1G05680 -0.31 0.9718 g129666 AT1G05710 -0.48 0.8268 g106960 AT1G05730 -0.07 0.9715 g54399 AT1G05750 -0.61 0.6716 g65086 AT1G05805 0.24 0.894 g65086 AT1G05805 0.24 0.894 g115145 AT1G05840 0.2 0.8322 g100017 AT1G05940 0.93 0.8268 g116279 AT1G06040 2.4 0.832 g107005 AT1G06050 0.29 0.892 g8826 AT1G06070 -0.35 0.8268 g44537 AT1G06110 -0.1 0.9454 g128419 AT1G06150 0.39 0.8268 g13014 AT1G06180 -0.93 0.9491 g46408 AT1G06190 -0.48 0.8268 g6767 AT1G06190 -0.45 0.8268 g46402 AT1G06210 0.04 0.9756 g38582 AT1G06390 -0.09 0.8876 g123004 AT1G06400 -0.16 0.9285 g29966 AT1G06410 0.49 0.8268 g30167 AT1G06490 0.46 0.8268 g121165 AT1G06550 0.03 0.9898 g13019 AT1G06620 0.17 0.9469 g64615 AT1G06620 -0.03 0.9887 g101442 AT1G06650 -0.09 0.9127 g43153 AT1G06690 -0.46 0.8268 g60203 AT1G06720 -0.3 0.832 g6683 AT1G06730 -0.27 0.8268 g64354 AT1G06760 0.12 0.9455 g93926 AT1G06780 0.11 0.9469 g35878 AT1G06820 0.23 0.8696 g127583 AT1G06840 0.04 0.9782 g34803 AT1G06870 0.1 0.9098 g90465 AT1G06890 0.38 0.832 g122104 AT1G06900 -0.29 0.832 g129096 AT1G06920 0.44 0.8952 g28446 AT1G06950 -0.2 0.8801 g13595 AT1G07010 0.1 0.9045 g13606 AT1G07090 0.2 0.8863 g92289 AT1G07110 0.09 0.9782 g62667 AT1G07130 -0.66 0.8268 g119355 AT1G07180 -0.06 0.9907 g127240 AT1G07230 0.24 0.9251 g123486 AT1G07250 0.07 0.9931 g76992 AT1G07320 0 0.9992 g74649 AT1G07350 0.28 0.846 g100602 AT1G07360 0.16 0.8294 g121585 AT1G07400 0.16 0.9044 g26538 AT1G07410 -0.1 0.9502 g74404 AT1G07470 -0.05 0.9718 g36506 AT1G07510 0.13 0.8438 g33365 AT1G07530 -0.03 0.9926 g74429 AT1G07540 -0.07 0.9686 g35002 AT1G07700 -0.16 0.8842 g74538 AT1G07705 0.3 0.8268 g89673 AT1G07705 0.12 0.9073 g74538 AT1G07705 0.3 0.8268 g121231 AT1G07710 -0.21 0.9517 g21605 AT1G07750 0.6 0.9331 g57937 AT1G07790 0.02 0.9971 g84890 AT1G07830 -0.11 0.9389 g41669 AT1G07840 -0.35 0.8268 g68334 AT1G07870 -0.14 0.9803 g20692 AT1G07870 0.34 0.9098 g74581 AT1G07890 -0.5 0.8268 g20501 AT1G07960 -0.04 0.9759 g89726 AT1G08010 -0.17 0.929 g62082 AT1G08070 0.22 0.8773 g67956 AT1G08110 -0.12 0.918 g67721 AT1G08200 -0.06 0.9702 g57483 AT1G08230 0.16 0.9331 g74214 AT1G08250 0.34 0.831 g13910 AT1G08280 0.3 0.8384 g67565 AT1G08320 0.44 0.8428 g53650 AT1G08360 0.12 0.9082 g123872 AT1G08370 0.42 0.832 g90891 AT1G08380 -0.27 0.9713 g107135 AT1G08420 0.37 0.8268 g107135 AT1G08420 0.37 0.8268 g96456 AT1G08450 0.04 0.9826 g90952 AT1G08465 0.27 0.8374 g107095 AT1G08480 -0.23 0.902 g96764 AT1G08490 -0.44 0.8268 g94077 AT1G08510 0.17 0.832 g4149 AT1G08520 -0.03 0.9941 g71065 AT1G08540 -0.22 0.8899 g28524 AT1G08550 -0.24 0.854 g129304 AT1G08570 0.16 0.9333 g28139 AT1G08590 0.19 0.8488 g119546 AT1G08620 -0.1 0.8985 g101026 AT1G08620 0.09 0.9431 g44686 AT1G08650 -0.33 0.9041 g87465 AT1G08680 0 0.9972 g60239 AT1G08720 -0.04 0.9838 g60109 AT1G08800 0.37 0.8876 g88470 AT1G08810 -0.35 0.8268 g77917 AT1G08820 -0.03 0.9888 g89106 AT1G08830 1.37 0.8268 g25052 AT1G08880 0 0.9996 g60326 AT1G08940 -0.71 0.8812 g10049 AT1G08970 0.27 0.887 g40287 AT1G08980 -0.15 0.9329 g60519 AT1G09070 -0.66 0.8268 g60570 AT1G09130 -0.2 0.8428 g45197 AT1G09155 -0.32 0.8384 g60654 AT1G09160 0.21 0.9389 g60724 AT1G09210 0.53 0.8268 g77406 AT1G09240 0.01 0.9974 g77364 AT1G09250 0.11 0.9062 g13944 AT1G09340 -0.61 0.8433 g77322 AT1G09380 0.15 0.9707 g57520 AT1G09410 -0.06 0.9754 g60821 AT1G09420 -0.42 0.8268 g60836 AT1G09430 -0.2 0.8574 g60862 AT1G09460 -0.08 0.9712 g69651 AT1G09560 1.08 0.8268 g55443 AT1G09570 0.27 0.8268 g61140 AT1G09610 0.19 0.9126 g61149 AT1G09630 -0.02 0.9942 g88109 AT1G09690 -0.16 0.9041 g41486 AT1G09700 0.08 0.9329 g102603 AT1G09730 0.21 0.8359 g41425 AT1G09750 -0.19 0.9429 g109070 AT1G09760 -0.62 0.8268 g64118 AT1G09815 -0.42 0.8268 g58478 AT1G09830 -0.19 0.8542 g77005 AT1G09840 -0.05 0.9742 g34500 AT1G09850 0.36 0.8444 g33563 AT1G09870 0.36 0.8268 g125397 AT1G09900 -0.11 0.9376 g103807 AT1G09960 0.93 0.8433 g58056 AT1G09970 0.21 0.9831 g15402 AT1G10070 0.49 0.8268 g41842 AT1G10150 0.5 0.8268 g118709 AT1G10155 -0.35 0.8384 g41920 AT1G10200 -0.27 0.858 g34545 AT1G10210 -0.05 0.9582 g61091 AT1G10280 0.09 0.9571 g65967 AT1G10290 0.05 0.9691 g55048 AT1G10430 -0.16 0.8526 g101851 AT1G10470 0.79 0.8268 g97212 AT1G10500 -0.07 0.9491 g18332 AT1G10522 -0.17 0.9285 g101901 AT1G10600 0.21 0.8757 g18591 AT1G10640 0.54 0.832 g71344 AT1G10680 0.47 0.8706 g4472 AT1G10700 0.01 0.9974 g18630 AT1G10740 0.24 0.8798 g18638 AT1G10760 0.02 0.9895 g51568 AT1G10830 0 0.9989 g3315 AT1G10850 0.13 0.9408 g76889 AT1G10900 0.29 0.8366 g76889 AT1G10900 0.29 0.8366 g53090 AT1G10910 -0.02 0.9895 g97989 AT1G10940 -0.3 0.8376 g91407 AT1G10950 0.24 0.84 g98432 AT1G10970 0.14 0.9131 g89382 AT1G11090 -0.44 0.8268 g23402 AT1G11190 -0.32 0.8559 g30861 AT1G11200 -0.33 0.9459 g23342 AT1G11260 -0.53 0.8268 g41591 AT1G11290 -0.22 0.8929 g23298 AT1G11330 -0.31 0.9344 g131193 AT1G11340 -0.24 0.8871 g26979 AT1G11340 0.84 0.329 g122710 AT1G11360 0.1 0.9368 g76834 AT1G11400 0 0.9972 g131177 AT1G11430 0.1 0.9571 g26994 AT1G11440 -0.37 0.8268 g23270 AT1G11530 0.21 0.9469 g23247 AT1G11545 0.02 0.9942 g23240 AT1G11570 0.06 0.9938 g23243 AT1G11580 -0.32 0.8357 g23223 AT1G11600 0.21 0.9391 g99148 AT1G11650 -0.04 0.9689 g129181 AT1G11670 0.32 0.8268 g23175 AT1G11720 -0.36 0.8357 g87659 AT1G11750 -0.19 0.854 g129959 AT1G11790 0.11 0.9597 g129964 AT1G11820 -0.01 0.9972 g23130 AT1G11860 -0.42 0.8707 g55478 AT1G11910 -0.27 0.9111 g69691 AT1G11910 -0.19 0.9269 g23106 AT1G11950 0.46 0.8268 g130035 AT1G12000 -0.19 0.8546 g113195 AT1G12040 0.37 0.8908 g4010 AT1G12060 0.38 0.8839 g34426 AT1G12090 -0.07 0.9821 g98210 AT1G12110 0.67 0.8268 g96231 AT1G12130 0.21 0.8932 g94666 AT1G12220 0.23 0.9408 g98235 AT1G12230 0.11 0.9285 g34405 AT1G12250 -0.54 0.8268 g98318 AT1G12330 -0.03 0.9896 g73073 AT1G12370 0.39 0.8268 g1270 AT1G12400 -0.44 0.8268 g99833 AT1G12410 -0.37 0.8433 g73102 AT1G12440 -0.52 0.8446 g99791 AT1G12460 0.1 0.9715 g99787 AT1G12480 0.14 0.9329 g99779 AT1G12520 -0.93 0.8268 g99740 AT1G12570 0.22 0.9331 g109860 AT1G12580 0.11 0.936 g59366 AT1G12600 -0.57 0.929 g73244 AT1G12640 0.19 0.9041 g76647 AT1G12680 0.32 0.832 g50203 AT1G12710 -0.29 0.842 g59312 AT1G12760 0.05 0.9825 g73269 AT1G12770 -0.1 0.9023 g106324 AT1G12790 -0.65 0.8268 g131291 AT1G12820 0.07 0.9479 g101234 AT1G12900 -0.35 0.9062 g40332 AT1G13130 0.01 0.9942 g51875 AT1G13160 -0.11 0.9126 g9538 AT1G13170 0.25 0.8268 g12642 AT1G13260 0.07 0.9838 g9596 AT1G13320 0.35 0.8333 g39046 AT1G13570 0.32 0.8788 g17572 AT1G13580 0.01 0.9968 g17673 AT1G13700 -0.17 0.9493 g81982 AT1G13710 0.25 0.8842 g12546 AT1G13740 1.42 0.8268 g12546 AT1G13740 1.42 0.8268 g83496 AT1G13750 -0.13 0.9879 g50967 AT1G13770 0.1 0.9331 g17707 AT1G13820 -0.24 0.9047 g101743 AT1G13860 0.09 0.9285 g27529 AT1G13870 -0.32 0.8268 g101746 AT1G13900 0.08 0.9685 g14777 AT1G13950 -0.29 0.8665 g55029 AT1G13960 0.03 0.9857 g17804 AT1G14000 0.71 0.8268 g39383 AT1G14030 -0.18 0.9295 g117305 AT1G14130 0.08 0.9941 g39457 AT1G14150 -0.41 0.9285 g39425 AT1G14205 0.09 0.9469 g69280 AT1G14310 -0.1 0.9175 g41900 AT1G14330 0.13 0.9341 g18025 AT1G14340 0.1 0.9408 g39557 AT1G14350 -0.23 0.9091 g39558 AT1G14360 -0.36 0.8585 g10528 AT1G14380 0 0.9988 g18067 AT1G14390 -0.19 0.8268 g39590 AT1G14410 -0.01 0.9953 g77125 AT1G14440 0.54 0.8268 g61023 AT1G14450 -0.18 0.8863 g76715 AT1G14530 -0.03 0.9898 g66989 AT1G14560 0.13 0.9462 g60514 AT1G14580 -0.42 0.9529 g54190 AT1G14650 0.04 0.9806 g4351 AT1G14660 0.44 0.9041 g100789 AT1G14670 0.12 0.9161 g101381 AT1G14685 -0.15 0.8433 g55247 AT1G14720 0.22 0.8773 g65077 AT1G14780 0.08 0.9782 g8447 AT1G14790 -0.03 0.9942 g55316 AT1G14810 -0.23 0.8818 g98068 AT1G14890 -0.2 0.9161 g87041 AT1G14900 0.35 0.8707 g125569 AT1G14920 -0.04 0.9686 g29498 AT1G15000 -0.12 0.9158 g37463 AT1G15020 -0.19 0.9436 g101580 AT1G15060 0.05 0.969 g37528 AT1G15080 -0.7 0.8268 g37515 AT1G15100 -0.25 0.8899 g37506 AT1G15110 0.73 0.8268 g12784 AT1G15130 0.06 0.969 g17096 AT1G15140 -0.34 0.8515 g13995 AT1G15290 0.53 0.8268 g120107 AT1G15340 0.36 0.8907 g56378 AT1G15390 -0.46 0.8268 g112005 AT1G15400 -0.04 0.9846 g34018 AT1G15440 0.55 0.8268 g112514 AT1G15460 -0.19 0.9298 g34038 AT1G15510 -0.11 0.9435 g38373 AT1G15520 0.23 0.9809 g84482 AT1G15530 0.05 0.9942 g34049 AT1G15550 1.18 0.8977 g129264 AT1G15670 -0.1 0.9408 g57271 AT1G15690 0.14 0.9518 g112093 AT1G15690 0.3 0.8268 g80531 AT1G15710 -0.15 0.9184 g112047 AT1G15750 -0.03 0.9941 g112047 AT1G15750 -0.03 0.9941 g61569 AT1G15820 -0.08 0.9953 g80358 AT1G15860 0.37 0.8268 g52457 AT1G15870 -0.09 0.9469 g50865 AT1G15910 -0.06 0.9712 g52475 AT1G15940 0.12 0.913 g14029 AT1G15950 0.31 0.9255 g52482 AT1G15960 -0.63 0.8268 g112067 AT1G15980 -0.12 0.9413 g118437 AT1G16020 0.26 0.8368 g21558 AT1G16030 0.1 0.9345 g112131 AT1G16040 0.1 0.9162 g109098 AT1G16180 -0.3 0.8428 g58969 AT1G16210 0.22 0.885 g43252 AT1G16250 -0.15 0.9039 g19134 AT1G16280 0.37 0.8268 g78815 AT1G16300 0.26 0.8588 g93116 AT1G16310 1.13 0.8521 g125546 AT1G16560 0.1 0.9096 g87029 AT1G16560 -0.48 0.8268 g79685 AT1G16590 -0.25 0.8899 g78793 AT1G16610 -0.09 0.9283 g49305 AT1G16670 0.55 0.8268 g101330 AT1G16710 -0.02 0.9942 g56671 AT1G16860 0.33 0.8268 g109079 AT1G16880 -0.19 0.8985 g124693 AT1G16890 -0.25 0.8549 g122437 AT1G16900 -0.05 0.9476 g23931 AT1G17020 0.42 0.8692 g30360 AT1G17110 0.2 0.832 g93334 AT1G17140 -0.62 0.8899 g30417 AT1G17160 -0.06 0.9469 g30294 AT1G17170 0.12 0.9431 g19650 AT1G17180 0.3 0.9047 g75805 AT1G17200 -0.12 0.9469 g30096 AT1G17220 0.08 0.9689 g30046 AT1G17230 0.1 0.9597 g91253 AT1G17280 -0.12 0.9469 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Created: 9th Apr 2022 at 20:15
Last updated: 21st Sep 2022 at 10:45
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Version 1 (earliest) Created 9th Apr 2022 at 20:15 by Marko Petek
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Advanced People list for this Data file with search and filtering
https://orcid.org/0000-0003-3644-7827PhD in Biotechnology, Research Associate at Department of Biotechnology and Systems Biology, National Institute of Biology
Advanced Programmes list for this Data file with search and filtering
National Institute of Biology, Department of Biotechnology and Systems Biology projects
Projects: HYp - Spatiotemporal analysis of hypersensitive response to Potato virus Y in potato, pISA-tree, MOA - Multiomics analysis of potato response to Potato virus Y (PVY) infection, SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture, INDIE - Biotechnological production of sustainable indole, _p_stRT, ADAPT - Accelerated Development of multiple-stress tolerAnt PoTato, _p_RNAinVAL, tst, tst2, Playground
Web page: http://www.nib.si/eng/index.php/departments/department-of-biotechnology-and-systems-biology
Advanced Projects list for this Data file with search and filtering
SUSPHIRE aims to provide a sustainable, low-cost biomanufacturing platform for the commercial production of insect pheromones.
Synthetic biology data management spreadsheet: https://fairdomhub.org/data_files/6036
Programme: NIBSys
Public web page: http://susphire.info/susphireproject/
Start date: 1st Apr 2018
End date: 30th Sep 2021
Advanced Investigations list for this Data file with search and filtering
Short Name: T21_SXPsysbio Title: Use a systems biology approach to identify regulatory bottlenecks in SxPv1 Description: Samples from SXPv1.0 plants as well as sister nulls (progeny from the original transgenic event in which the transgene has segregated) and wild type will be grown and leaf samples taken for RNA extraction and profiling of primary metabolites and volatiles (target pheromones as well as potential derivatives) (P1, P5). Phenotypic and GC-MS data will be obtained and analysed from ...
Submitter: Marko Petek
Studies: Investigation files, _S_P1_SPv10T0andT1, _S_P1_SPv10T2andT3, _S_P1_SPv1TransientExp, _S_P1_SxPAltAcTransferases, _S_P1_SxPv10vsSxP12, _S_P1_SxPv12T2, _S_P4_CoExpNetViz, _S_P4_DiNAR, _S_P4_GAtreat, _S_P4_SxP10-newG-DE, _S_P4_SxP10-oldG-DE, _S_P4_SxP1012-finalG, _S_P4_SxP12-newG-DE
Assays: _A_00_SxP_photos-phenotyping, _A_01_RNA1-RNAisol, _A_01_SxP_Data_Only-CoExp, _A_01_SxPv12_fastq-QC, _A_01_mapping-CLC, _A_01_toNewGenome-CLC-mapping, _A_02_FastQC-bioinfo, _A_02_Nb_datasets-CoExp, _A_02_SxPv12_mapping-CLC, _A_02_limmavoomDE-R, _A_02a_limmavoom-multim-R, _A_02a_limmavoomDEbylines-R, _A_02b_limmavoom-uniquem-R, _A_03_MapMan-visualisation, _A_03_NewGenome-MapMan, _A_03_SxPv12_limmavoom_DE-R, _A_03_mapping-CLC, _A_03a_mapping2-STAR, _A_04_GSEA-Stat, _A_04_MapManBINenrich-GSEA, _A_04_Mercator-bioinfo, _A_04_SxPv12_GeneSetEnrichment-RNAseg-GSEA, _A_05_DEstat-R, _A_05_Phenotype_analysis-Stat, _A_05_VOCcomp-Bioinfo, _A_05a_DEstat2-R, _A_05b_DElow-wt-R, _A_06_MapMan-bioinfo, _A_06_SxPv1-0_Illumina-Centrifuge, _A_07_NbAUSv1-0-InterPro, _A_07_transgenes-CLC, _A_CKN-DiNAR, _A_CKN_NbL35-DiNAR, _A_LeavesSxPv10vsv12-GCMS, _A_P4_v10v12-phenotyping, _A_PIS-DiNAR, _A_PIS-SxPv12-DiNAR, _A_PIS_NbL35-DiNAR, _A_RootsSxPv10vsv12-GCMS, _A_SP10T0Analysis-GCMS, _A_SP10T1Analysis-GCMS, _A_SPv10EaDActAnalysis-GCMS, _A_SPv10T2Analysis-GCMS, _A_SPv10T3Analysis-GCMS, _A_SPv10_phenotyping-Images, _A_SxPAlternativeAcetyltransferases-GCMS, _A_SxPv10vsv12-phenotyping, _A_SxPv12ScreeningT2-GCMS, _A_TransientSPv11andSPv12-GCMS, _I_T21_SXPsysbio-files, _S_P1_SPv10T0andT1-files, _S_P1_SPv10T2andT3-files, _S_P1_SPv1TransientExp-files, _S_P1_SxPAltAcTransferases-files, _S_P1_SxPv10vsSxP12-files, _S_P1_SxPv12T2-files, _S_P4_CoExpNetViz-files, _S_P4_DiNAR-files, _S_P4_GAtreat-files, _S_P4_SxP10-newG-DE-files, _S_P4_SxP10-oldG-DE-files, _S_P4_SxP1012-finalG-files, _S_P4_SxP12-newG-DE-files
Advanced Studies list for this Data file with search and filtering
Short Name: DiNAR Title: DiNAR analyses of SxP DE data Description: DiNAR visualisation of SxPv1.0 and SxPv1.2 expressoin data in either PIS or CKN networks. Raw Data: Principal investigator: Ĺ pela Baebler License: Creative Commons Attribution 4.0 Sharing permission: Private Upload to FAIRDOMHub: Yes
Submitter: Marko Petek
Investigation: _I_T21_SXPsysbio
Assays: _A_CKN-DiNAR, _A_CKN_NbL35-DiNAR, _A_PIS-DiNAR, _A_PIS-SxPv12-DiNAR, _A_PIS_NbL35-DiNAR, _S_P4_DiNAR-files
Advanced Assays list for this Data file with search and filtering
Short Name: CKN-DiNAR Assay Class: DRY Assay Type: DiNAR Title: Visualisation of DE genes in SxPv1.0 lines with DiNAR Description: Mapping of SxPv1.0 data to Nb genome v1, DE was done by lines (low1, low2, high1, high2) against wt. pISA Assay creation date: 2020-12-15 pISA Assay creator: Mojca Juteršek Phenodata: None Featuredata: Data:
Submitter: Marko Petek
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_T21_SXPsysbio
Study: _S_P4_DiNAR
