ExploreIncluding 277 genes and 1222 Breast cancer patients. This is an input data for WGCNA.
SEEK ID: https://fairdomhub.org/data_files/3990?version=1
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WGCNA_GO2_log.csv
Format: Comma-separated values document
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Created: 3rd Feb 2021 at 15:51
Last updated: 9th Feb 2021 at 10:37
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Version 1 (earliest) Created 3rd Feb 2021 at 15:51 by Yi Chen
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Projects: Consensus Hallmark Annotation, FAIR Functional Enrichment, The evolution of Gene Ontology
Institutions: University of Leiden, LIACS
Projects: Consensus Hallmark Annotation, The evolution of Gene Ontology
Web page: Not specified
Data and experimental methods to support the work in the following paper:
Establishing Consensus Annotation for the Hallmarks of Cancer, 2020, Yi Chen, F.J.Verbeek and K.Wolstencroft, in submission
Programme: Hallmarks of cancer
Public web page: Not specified
The hallmarks of cancer provide a highly cited and well-used conceptual framework for describing the processes involved in cancer cell development. However, methods for translating these high-level concepts into data-level associations between hallmarks and genes (for high throughput analysis), vary widely between studies. In this investigation we compare cancer hallmark mapping strategies from different studies, based on Gene Ontology and biological pathway annotation. By analysing the semantic ...
Submitter: Katy Wolstencroft
Studies: Comparing Cancer Hallmark Descriptions, Evolution of Gene Ontology Terms, Prognostic and Hallmark Gene Networks
Assays: Analysing Changes to GO Biological Process, Annotation Consensus and GO Consensus, Hub genes of modules and enriched GO terms, Jaccard Index Prognostic Hallmark Genes, WGCNA Prognostic Hallmark Genes
This study examines how different hallmark gene datasets intersect with prognostic cancer genes
Submitter: Katy Wolstencroft
Investigation: Cancer Hallmark Consensus
Assays: Hub genes of modules and enriched GO terms, Jaccard Index Prognostic Hallmark Genes, WGCNA Prognostic Hallmark Genes
A Weighted Gene Co-Expression Network Analysis (WGCNA) of breast cancer prognostic genes (derived from transcriptome data from the TCGA Genomics Data Commons (GDC) data portal (https://portal.gdc.cancer.gov/)), and cancer hallmark genes.
Submitter: Katy Wolstencroft
Biological problem addressed: Biological Network Analysis
Investigation: Cancer Hallmark Consensus
