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2 Assays visible to you, out of a total of 2

_A_02_cdhit_3cvs-GFFmerged

_p_stRT

Short Name: cdhit_3cvs-GFFmerged Assay Class: DRY Assay Type: GFFmerged Title: cdhit-est and cdhit-2d on 3cv and ITAG/PGSC Description: cdhit-est and cdhit-2d on 3cv and ITAG/PGSC pISA Assay creation date: 2020-03-09 pISA Assay creator: Maja Zagorscak Phenodata: None Featuredata: Data:

Submitter: Andrej Blejec

Biological problem addressed: Model Analysis Type

Investigation: _I_STRT

Study: _S_04_stPanTr

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: /input/Solanum_tuberosum_ITAG_DM_v1_description..., /input/Solanum_tuberosum_PGSC_DM_v4.04_converte..., /input/StPGSC4.04n_seq_4_PGSC-p-rep_ITAG-pep_gf..., /input/path_to_files.txt, /intermediate/singletons.DM.seqID.txt, /intermediate/singletons.seqID.txt, /intermediate/singletons.tetra.seqID.txt, /intermediate/stCuSTr_cds_repAlt_cdhitEST-conda..., /intermediate/stPanTr_aa_singletons_DM_on_tetra..., /intermediate/stPanTr_aa_singletons_tetra_on_DM..., /output/5cv_weak-components.txt, /output/5cv_weak-components_withAnnotation.tsv, /output/VennDiagrams/stPanTr+stCuSTr_geneCount_..., /output/VennDiagrams/stPanTr_geneCount_weak-com..., /output/VennDiagrams/stPanTr_geneCount_weak-com..., /output/VennDiagrams/stPanTr_geneCount_weak-com..., /output/VennDiagrams/stPanTr_geneCount_weak-com..., /output/VennDiagrams/stPanTr_geneCount_weak-com..., /output/VennDiagrams/stPanTr_geneCount_weak-com..., /output/VennDiagrams/stPanTr_geneCount_weak-com..., /output/VennDiagrams/stPanTr_geneCount_weak-com..., /output/annot.alias.aa.tsv, /output/annot.alias.cds.tsv, /output/cdhit-est_rep-alt_aS.75_c.90_pairs.tsv, /output/cdhit-est_representativesMatched_aS.75_..., /output/cdhit-est_singletons_aS.75_c.90.tsv, /output/stPanTr-clusters.tsv, /output/trueSingle.DM.ID, /output/trueSingle.polyploid.ID, /reports/SupplementaryFigure4.pdf, /reports/SupplementaryTableS7, /reports/cvID_group-Rplot.pdf, /reports/cv_group-Rplot.pdf, /scripts/01.1_commands-CDHIT-EST.txt, /scripts/01.2_commands-CDHIT-2D.txt, /scripts/02_cd-hit-est_cdhit-2d.html, /scripts/03_stPanTr_components_all.html, /scripts/04_summary_stPanTr_v4.html and 4 hidden items

Snapshots: Snapshot 1, Snapshot 2

DOI: 10.15490/fairdomhub.1.assay.1263.2

Created: 18th Mar 2020 at 20:44, Last updated: 5th May 2022 at 23:36

Supplementary Information

_p_stRT

Supplementary Information linked together

Submitter: Maja Zagorscak

Biological problem addressed: Model Analysis Type

Investigation: _I_STRT

Study: SupplementaryInformation

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: /reports/SupplementaryFigure1.pdf, /reports/SupplementaryFigure2.pdf, /reports/SupplementaryFigure3.pdf, /reports/SupplementaryFigure4.pdf, /reports/SupplementaryFile2.html, /reports/SupplementaryFile3.html, /reports/SupplementaryTableS1, /reports/SupplementaryTableS2, /reports/SupplementaryTableS3, /reports/SupplementaryTableS4, /reports/SupplementaryTableS5, /reports/SupplementaryTableS6, /reports/SupplementaryTableS7, /reports/SupplementaryTableS8, SupplementaryFile1

Snapshots: Snapshot 1

DOI: 10.15490/fairdomhub.1.assay.1261.1

Created: 13th Mar 2020 at 18:24, Last updated: 8th Apr 2020 at 16:30

(v.1.16.0)

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