Multiple sequence alignment
Alignments of various alpha-tubulin and beta-tubulin sequences from dinitroaniline-sensitive and dinitroaniline-resistant species. Sequences were retrieved from UniProt with the identifiers listed below and subjected to a multiple sequence alignment using ClustalOmega (ebi.ac.uk/Tools/msa/clustalo/; ClustalOmega webserver, last accessed 16-02-23):
alpha-tubulin:
- [dinitroaniline sensitive] T. cruzi - Q27352; T. brucei brucei - Q4GYY5; L. infantum - E9AGJ8; L. donovani - I3W8N6; L. major - Q4QGC5; T. gondii - P10873; P. falciparum - P14642; E. indica - O22347; C. reinhardtii - P09204; S. viridis - Q65C79; Z. mays - P14640; T. thermophila P41351
- [dinitroaniline resistant] H. sapiens - Q71U36; B. taurus - Q32KN8; S. scrofa - P02550; S. barbatus - A0A0R4I993; O. aries - D0VWZ0; R. norvegicus - P68370; G. gallus - P08070
- [Unknown] S. cerevisiae - P09733
beta-tubulin:
- [dinitroaniline sensitive] T. cruzi - Q8STF3; T. brucei brucei - Q4GYY6; L. infantum - A4HZJ3; L. donovani - I3W8N7; L. major - Q4QBZ6; T. gondii - P10878; P. falciparum - P14643; E. indica - Q9ZPP0; C. reinhardtii - P04690; S. viridis - Q65C77; Z. mays - P18025; T. thermophila P41352
- [dinitroaniline resistant] H. sapiens - Q9H4B7; B. taurus - Q2T9S0; S. scrofa - P02554; S. barbatus - A0A0R4I995; O. aries - W5PPT6; R. norvegicus - Q4QRB4; G. gallus - P32882
- [Unknown] S. cerevisiae - P02557
SEEK ID: https://fairdomhub.org/assays/2059
Modelling analysis
Projects: NMTrypI - New Medicines for Trypanosomatidic Infections
Investigation: Antiparasitic dinitroaniline-ether phospholipid hybrids
Assay position:
Biological problem addressed: Model Analysis Type
Organisms: Trypanosoma cruzi, Trypanosoma brucei, Leishmania infantum, Leishmania donovani, Leishmania major
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Creators and Submitter
Views: 333
Created: 16th Feb 2023 at 11:20
Last updated: 24th Apr 2023 at 13:34
TagsRelated items
Projects: Kinetics on the move - Workshop 2016, COVID-19 Disease Map, NMTrypI - New Medicines for Trypanosomatidic Infections, CoVIDD - Coronavirus interactions in drug discovery - optimization and implementation
Institutions: Kinetics on the move Workshop at HITS, Heidelberg Institute for Theoretical Studies (HITS gGmbH), University of Eastern Finland (UEF)
https://orcid.org/0000-0002-2801-8902
Group Leader, Molecular and Cellular Modeling Group, EML Research, Heidelberg
Projects: NMTrypI - New Medicines for Trypanosomatidic Infections
Web page: https://cordis.europa.eu/programme/id/FP7_HEALTH.2013.2.3.4-2
The New Medicines for Trypanosomatidic Infections - NMTrypI project aimed at obtaining new candidate drugs against Trypanosomatidic infections with appropriate efficiency from the lead phase to the final preclinical phase that are more accessible to patients.
Programme: Drug development for neglected parasitic diseases
Public web page: https://fp7-nmtrypi.eu/
Start date: 1st Feb 2014
End date: 31st Jan 2017
Design, synthesis, computational studies and biological evaluation of antiparasitic dinitroaniline-ether phospholipid hybrids
Submitter: Ina Poehner
Studies: Computational identification of potential dinitroaniline binding sites i..., Docking studies of trifluraline and the dinitroaniline-etherphospholipid...
Assays: Comparative electrostatic analysis of dinitroaniline-sensitive and -resi..., Induced-fit docking studies, Multiple sequence alignment, Preparation of multimeric tubulin docking receptors
Sequence and electrostatic potential analyses to identify sites in tubulins that differ between dinitroaniline-sensitive and dinitroaniline-resistant species.
Clustal Omega multiple sequence alignment result for selected alpha-tubulins in FASTA format with gaps. Species and corresponding Uniprot identifiers can be found in the FASTA file.
The following species (Uniprot ID, dinitroaniline-sensitive/resistant) were considered:
- Trypanosoma cruzi (Q27352, sensitive)
- Trypanosoma brucei brucei (Q4GYY5, sensitive)
- Leishmania infantum (E9AGJ8, sensitive)
- Leishmania donovani (I3W8N6, sensitive)
- Leishmania major (Q4QGC5, sensitive)
- Toxoplasma gondii ...
Clustal Omega multiple sequence alignment result for selected beta-tubulins in FASTA format with gaps. Species and corresponding Uniprot identifiers can be found in the FASTA file.
The following species (Uniprot ID, dinitroaniline-sensitive/resistant) were considered:
- Trypanosoma cruzi (Q8STF3, sensitive)
- Trypanosoma brucei brucei (Q4GYY6, sensitive)
- Leishmania infantum (A4HZJ3, sensitive)
- Leishmania donovani (I3W8N7, sensitive)
- Leishmania major (Q4QBZ6, sensitive)
- Toxoplasma gondii ...
