Models

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Exponential Decay PEtab Problem in yaml format

The exponential decay model with all parameters, observables and conditions was specified in a yaml file.

This yaml file is converted with yaml2sbml (2020 Jakob Vanhoefer, Marta R. A. Matos, Dilan Pathirana, Yannik Schaelte and Jan Hasenauer) to a PEtab problem, which contains also the SBML model.

Creator: Sebastian Höpfl

Submitter: Sebastian Höpfl

Model type: Ordinary differential equations (ODE)

Model format: SBML

Environment: Not specified

Organism: Mus musculus

Investigations: 2 hidden items

Studies: Periportal steatosis in mice affects distinct p... and 1 hidden item

Assays: Bayesian uncertainty quantification, Bayesian uncertainty quantification

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Created: 22nd Jul 2022 at 08:09, Last updated: 9th Dec 2022 at 06:08

Compiled SBML models from PEtab yaml file

Working Group Nicole Radde, SteaPKMod

The SOP creates a separate SBML model for each drug and condition, as the PEtab problem contains diffrent experimental data for them.

However, the SBML models only differ in their name as for all drugs and conditions, the same exponential decay model was assumed.

The SBMLs are automatically created by yaml2sbml, when the SOP is executed. Therefore, these files are for completeness only and are not necessary to replicate the analysis.