Differential transcript expression analysis

The FZB is the lung research center of the Leibniz Association and is therefore committed to the motto “theoria cum praxi”.

The FZB sees its scientific and socio-political task in basic, disease- and patient-oriented lung research and training in this field. The field of research includes chronic inflammatory diseases of the lung of infectious and non-infectious environmental and behavioral origin. Research focuses on tuberculosis, infections with non-tuberculous mycobacteria and other bacterial ...

Conda-based DESeq2 pipeline (R 4.5 + Bioconductor) that renders a Quarto report comparing C3 samples to all others in two commands. Bundle includes DET.yml, DET.sh, and DE_C3_vs_all.qmd

This Quarto Markdown file performs differential gene expression analysis using DESeq2, followed by pathway enrichment analysis for Gene Ontology (GO) and KEGG pathways. It includes a heatmap of the top differentially expressed genes and results for GO and KEGG pathway analysis, providing insights into the biological processes affected by experimental conditions.