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31 Data files visible to you, out of a total of 31

Model | Flux balance analysis (FBA)

EbN1 Systems Biology

Comparative flux balance analysis file. All values are given in mmol/g/h. Fluxes were optimized to maximize BIOMASS.

Creators: None

Submitter: Julia Koblitz

Investigations: Systems biology investigation of aromatic compo...

Studies: Metabolic Modelling

Assays: Metabolic modeling of EbN1

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Created: 15th Jul 2022 at 06:53, Last updated: 13th Oct 2022 at 07:44

Model | Biomass composition

EbN1 Systems Biology

(Show All)

No description specified

Creators: Meina Neumann-Schaal, Dietmar Schomburg, Julia Koblitz

Submitter: Julia Koblitz

Investigations: Systems biology investigation of aromatic compo...

Studies: Metabolic Modelling

Assays: Metabolic modeling of EbN1

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Created: 15th Jul 2022 at 07:01, Last updated: 13th Oct 2022 at 07:44

Model | Simulation parameters and results

EbN1 Systems Biology

Uptake and growth rates, and biomass yields are compared in vivo and in silico.

Creators: None

Submitter: Julia Koblitz

Investigations: Systems biology investigation of aromatic compo...

Studies: Metabolic Modelling

Assays: Metabolic modeling of EbN1

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Created: 15th Jul 2022 at 07:10, Last updated: 13th Oct 2022 at 07:44

Model - Scenario - 3-HBz aerobic

EbN1 Systems Biology

The metano scenario file for aerobic growth on 3-Hydroxybenzoate.

Creators: None

Submitter: Julia Koblitz

Investigations: Systems biology investigation of aromatic compo...

Studies: Metabolic Modelling

Assays: Scenario files for Metano metabolic modeling

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Created: 15th Jul 2022 at 06:25, Last updated: 13th Oct 2022 at 07:43

Model - Scenario - 3-HBz anaerobic

EbN1 Systems Biology

The metano scenario file for anaerobic growth on 3-Hydroxybenzoate.

Creators: None

Submitter: Julia Koblitz

Investigations: Systems biology investigation of aromatic compo...

Studies: Metabolic Modelling

Assays: Scenario files for Metano metabolic modeling

Download

Created: 15th Jul 2022 at 06:26, Last updated: 13th Oct 2022 at 07:43

Model - Scenario - 4HPP aerobic

EbN1 Systems Biology

The metano scenario file for aerobic growth on 4HPP.

Creators: None

Submitter: Julia Koblitz

Investigations: Systems biology investigation of aromatic compo...

Studies: Metabolic Modelling

Assays: Scenario files for Metano metabolic modeling

Download

Created: 15th Jul 2022 at 06:27, Last updated: 13th Oct 2022 at 07:43

Model - Scenario - 4HPP anaerobic

EbN1 Systems Biology

The metano scenario file for anaerobic growth on 4HPP.

Creators: None

Submitter: Julia Koblitz

Investigations: Systems biology investigation of aromatic compo...

Studies: Metabolic Modelling

Assays: Scenario files for Metano metabolic modeling

Download

Created: 15th Jul 2022 at 06:28, Last updated: 13th Oct 2022 at 07:43

Model - Scenario - Acetate aerobic

EbN1 Systems Biology

The metano scenario file for aerobic growth on acetate.

Creators: None

Submitter: Julia Koblitz

Investigations: Systems biology investigation of aromatic compo...

Studies: Metabolic Modelling

Assays: Scenario files for Metano metabolic modeling

Download

Created: 15th Jul 2022 at 06:08, Last updated: 13th Oct 2022 at 07:43

Model - Scenario - Acetate anaerobic

EbN1 Systems Biology

The metano scenario file for anaerobic growth on acetate.

Creators: None

Submitter: Julia Koblitz

Investigations: Systems biology investigation of aromatic compo...

Studies: Metabolic Modelling

Assays: Scenario files for Metano metabolic modeling

Download

Created: 15th Jul 2022 at 06:12, Last updated: 13th Oct 2022 at 07:43

Model - Scenario - Benzoate aerobic

EbN1 Systems Biology

The metano scenario file for aerobic growth on Benzoate.

Creators: None

Submitter: Julia Koblitz

Investigations: Systems biology investigation of aromatic compo...

Studies: Metabolic Modelling

Assays: Scenario files for Metano metabolic modeling

Download

Created: 15th Jul 2022 at 06:13, Last updated: 13th Oct 2022 at 07:43

Model - Scenario - Benzoate anaerobic

EbN1 Systems Biology

The metano scenario file for anaerobic growth on benzoate.

Creators: None

Submitter: Julia Koblitz

Investigations: Systems biology investigation of aromatic compo...

Studies: Metabolic Modelling

Assays: Scenario files for Metano metabolic modeling

Download

Created: 15th Jul 2022 at 06:22, Last updated: 13th Oct 2022 at 07:43

Model - Scenario - Phenylalanine aerobic

EbN1 Systems Biology

The metano scenario file for aerobic growth on L-phenylalanine.

Creators: None

Submitter: Julia Koblitz

Investigations: Systems biology investigation of aromatic compo...

Studies: Metabolic Modelling

Assays: Scenario files for Metano metabolic modeling

Download

Created: 15th Jul 2022 at 06:23, Last updated: 13th Oct 2022 at 07:43

Model - Scenario - Phenylalanine anaerobic

EbN1 Systems Biology

The metano scenario file for anaerobic growth on L-phenylalanine.

Creators: None

Submitter: Julia Koblitz

Investigations: Systems biology investigation of aromatic compo...

Studies: Metabolic Modelling

Assays: Scenario files for Metano metabolic modeling

Download

Created: 15th Jul 2022 at 06:24, Last updated: 13th Oct 2022 at 07:43

Protein identification data

EbN1 Systems Biology

No description specified

Creators: None

Submitter: Lars Wöhlbrand

Investigations: Systems biology investigation of aromatic compo...

Studies: Experimental multi-OMICS

Assays: Proteomic data

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Created: 3rd Jun 2022 at 09:34, Last updated: 13th Oct 2022 at 07:29

Detailed peptide data for identified proteins

EbN1 Systems Biology

No description specified

Creators: None

Submitter: Lars Wöhlbrand

Investigations: Systems biology investigation of aromatic compo...

Studies: Experimental multi-OMICS

Assays: Proteomic data

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Created: 3rd Jun 2022 at 09:35, Last updated: 13th Oct 2022 at 07:29

EbN1 fastq Ac

EbN1 Systems Biology

No description specified

Creators: None

Submitter: Patrick Becker

Investigations: Systems biology investigation of aromatic compo...

Studies: Experimental multi-OMICS

Assays: Transcriptomic data

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Created: 21st Jun 2022 at 06:27, Last updated: 13th Oct 2022 at 07:29

Aromatoleum aromaticum EbN1 chromosome, complete sequence

EbN1 Systems Biology

No description specified

Creators: None

Submitter: Patrick Becker

Investigations: Systems biology investigation of aromatic compo...

Studies: Genome re-annotation

Assays: EbN1 Genome re-annotation

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Created: 23rd Jun 2022 at 15:14, Last updated: 13th Oct 2022 at 07:29

Aromatoleum aromaticum EbN1 plasmid1, complete sequence

EbN1 Systems Biology

No description specified

Creators: None

Submitter: Patrick Becker

Investigations: Systems biology investigation of aromatic compo...

Studies: Genome re-annotation

Assays: EbN1 Genome re-annotation

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Created: 23rd Jun 2022 at 15:15, Last updated: 13th Oct 2022 at 07:29

Aromatoleum aromaticum EbN1 plasmid2, complete sequence

EbN1 Systems Biology

No description specified

Creators: None

Submitter: Patrick Becker

Investigations: Systems biology investigation of aromatic compo...

Studies: Genome re-annotation

Assays: EbN1 Genome re-annotation

Download

Created: 23rd Jun 2022 at 15:17, Last updated: 13th Oct 2022 at 07:29

O2_MS_small_metabolites_Data

EbN1 Systems Biology

No description specified

Creators: Katrin Ripken, Sarah Kirstein

Submitter: Sarah Kirstein

Investigations: Systems biology investigation of aromatic compo...

Studies: Experimental multi-OMICS

Assays: non-volatile metabolites GC/MS

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Created: 27th Apr 2022 at 12:00, Last updated: 13th Oct 2022 at 07:29

Non-volatile, small, polar metabolites´GC/MS data sample identification

EbN1 Systems Biology

No description specified

Creator: Sarah Kirstein

Submitter: Sarah Kirstein

Investigations: Systems biology investigation of aromatic compo...

Studies: Experimental multi-OMICS

Assays: non-volatile metabolites GC/MS

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Created: 30th Apr 2022 at 14:58, Last updated: 13th Oct 2022 at 07:29

EbN1 fastq Bz

EbN1 Systems Biology

No description specified

Creators: None

Submitter: Patrick Becker

Investigations: Systems biology investigation of aromatic compo...

Studies: Experimental multi-OMICS

Assays: Transcriptomic data

Download

Created: 9th May 2022 at 09:34, Last updated: 13th Oct 2022 at 07:29

EbN1 fastq 3HBz

EbN1 Systems Biology

No description specified

Creators: None

Submitter: Patrick Becker

Investigations: Systems biology investigation of aromatic compo...

Studies: Experimental multi-OMICS

Assays: Transcriptomic data

Download

Created: 9th May 2022 at 10:41, Last updated: 13th Oct 2022 at 07:29

EbN1 fastq 4HPP

EbN1 Systems Biology

No description specified

Creators: None

Submitter: Patrick Becker

Investigations: Systems biology investigation of aromatic compo...

Studies: Experimental multi-OMICS

Assays: Transcriptomic data

Download

Created: 9th May 2022 at 11:41, Last updated: 13th Oct 2022 at 07:29

EbN1 fastq Phe

EbN1 Systems Biology

No description specified

Creators: None

Submitter: Patrick Becker

Investigations: Systems biology investigation of aromatic compo...

Studies: Experimental multi-OMICS

Assays: Transcriptomic data

Download

Created: 9th May 2022 at 12:52, Last updated: 13th Oct 2022 at 07:29

Results - CoA-esters via LC-MS

EbN1 Systems Biology

No description specified

Creators: None

Submitter: Sarah Kirstein

Investigations: Systems biology investigation of aromatic compo...

Studies: Experimental multi-OMICS

Assays: CoA LC/MS Data

Download

Created: 25th Apr 2022 at 12:56, Last updated: 13th Oct 2022 at 07:29

Results - Non-volatile, small, polar metabolites via GC-MS

EbN1 Systems Biology

No description specified

Creator: Katrin Ripken

Submitter: Sarah Kirstein

Investigations: Systems biology investigation of aromatic compo...

Studies: Experimental multi-OMICS

Assays: non-volatile metabolites GC/MS

Download

Created: 25th Apr 2022 at 12:58, Last updated: 13th Oct 2022 at 07:29

NO3_MS_small_metabolites_Data

EbN1 Systems Biology

No description specified

Creators: Katrin Ripken, Esther Wenzel

Submitter: Sarah Kirstein

Investigations: Systems biology investigation of aromatic compo...

Studies: Experimental multi-OMICS

Assays: non-volatile metabolites GC/MS

Download

Created: 27th Apr 2022 at 09:16, Last updated: 13th Oct 2022 at 07:29

CoA LC/MS Data Sample Identification

EbN1 Systems Biology

No description specified

Creators: None

Submitter: Sarah Kirstein

Investigations: Systems biology investigation of aromatic compo...

Studies: Experimental multi-OMICS

Assays: CoA LC/MS Data

Download

Created: 27th Apr 2022 at 10:19, Last updated: 13th Oct 2022 at 07:29

O2_MS_CoA_Data

EbN1 Systems Biology

No description specified

Creators: None

Submitter: Sarah Kirstein

Investigations: Systems biology investigation of aromatic compo...

Studies: Experimental multi-OMICS

Assays: CoA LC/MS Data

Download

Created: 25th Apr 2022 at 12:41

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