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input/LDEC.faa

_p_RNAinVAL

_p_RNAinVAL/_I_01_LabTrials/_S_01_TargetSelect/_A_03_patentDB-BLAST/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_01_LabTrials

Studies: _S_01_TargetSelect

Assays: _A_03_patentDB-BLAST

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Created: 12th Nov 2021 at 15:16, Last updated: 12th Nov 2021 at 15:16

output/Tctop100cds__Ld_nucl.output

_p_RNAinVAL

_p_RNAinVAL/_I_01_LabTrials/_S_01_TargetSelect/_A_02_UlrichTop100-BLAST/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_01_LabTrials

Studies: _S_01_TargetSelect

Assays: _A_02_UlrichTop100-BLAST

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Created: 12th Nov 2021 at 15:16, Last updated: 12th Nov 2021 at 15:16

output/Tctop100cds__Ld_nucl.log

_p_RNAinVAL

_p_RNAinVAL/_I_01_LabTrials/_S_01_TargetSelect/_A_02_UlrichTop100-BLAST/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_01_LabTrials

Studies: _S_01_TargetSelect

Assays: _A_02_UlrichTop100-BLAST

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Created: 12th Nov 2021 at 15:16, Last updated: 12th Nov 2021 at 15:16

output/Tctop100cds__CPB_genome_prot.output

_p_RNAinVAL

_p_RNAinVAL/_I_01_LabTrials/_S_01_TargetSelect/_A_02_UlrichTop100-BLAST/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_01_LabTrials

Studies: _S_01_TargetSelect

Assays: _A_02_UlrichTop100-BLAST

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Created: 12th Nov 2021 at 15:15, Last updated: 12th Nov 2021 at 15:16

output/Tctop100cds__CPB_genome_prot.log

_p_RNAinVAL

_p_RNAinVAL/_I_01_LabTrials/_S_01_TargetSelect/_A_02_UlrichTop100-BLAST/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_01_LabTrials

Studies: _S_01_TargetSelect

Assays: _A_02_UlrichTop100-BLAST

Download

Created: 12th Nov 2021 at 15:15, Last updated: 12th Nov 2021 at 15:15

output/Tctop100cds__CPB_genome_nucl.output

_p_RNAinVAL

_p_RNAinVAL/_I_01_LabTrials/_S_01_TargetSelect/_A_02_UlrichTop100-BLAST/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_01_LabTrials

Studies: _S_01_TargetSelect

Assays: _A_02_UlrichTop100-BLAST

Download

Created: 12th Nov 2021 at 15:15, Last updated: 12th Nov 2021 at 15:15

output/Tctop100cds__CPB_genome_nucl.log

_p_RNAinVAL

_p_RNAinVAL/_I_01_LabTrials/_S_01_TargetSelect/_A_02_UlrichTop100-BLAST/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_01_LabTrials

Studies: _S_01_TargetSelect

Assays: _A_02_UlrichTop100-BLAST

Download

Created: 12th Nov 2021 at 15:15, Last updated: 12th Nov 2021 at 15:15

input/Biomart_Tc_top100pept.fasta

_p_RNAinVAL

_p_RNAinVAL/_I_01_LabTrials/_S_01_TargetSelect/_A_02_UlrichTop100-BLAST/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_01_LabTrials

Studies: _S_01_TargetSelect

Assays: _A_02_UlrichTop100-BLAST

Download

Created: 12th Nov 2021 at 15:15, Last updated: 12th Nov 2021 at 15:15

input/Biomart_Tc_top100mRNA.fasta

_p_RNAinVAL

_p_RNAinVAL/_I_01_LabTrials/_S_01_TargetSelect/_A_02_UlrichTop100-BLAST/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_01_LabTrials

Studies: _S_01_TargetSelect

Assays: _A_02_UlrichTop100-BLAST

Download

Created: 12th Nov 2021 at 15:15, Last updated: 12th Nov 2021 at 15:15

input/Biomart_Tc_top100CDS.fasta

_p_RNAinVAL

_p_RNAinVAL/_I_01_LabTrials/_S_01_TargetSelect/_A_02_UlrichTop100-BLAST/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_01_LabTrials

Studies: _S_01_TargetSelect

Assays: _A_02_UlrichTop100-BLAST

Download

Created: 12th Nov 2021 at 15:15, Last updated: 12th Nov 2021 at 15:15

output/GenomeRNAi_v14_FrequentHitters.zip

_p_RNAinVAL

_p_RNAinVAL/_I_01_LabTrials/_S_01_TargetSelect/_A_01_LitData-dry/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_01_LabTrials

Studies: _S_01_TargetSelect

Assays: _A_01_LitData-dry

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Created: 12th Nov 2021 at 15:14, Last updated: 12th Nov 2021 at 15:14

output/DATABASES OF RNAi SCREENS.docx

_p_RNAinVAL

_p_RNAinVAL/_I_01_LabTrials/_S_01_TargetSelect/_A_01_LitData-dry/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_01_LabTrials

Studies: _S_01_TargetSelect

Assays: _A_01_LitData-dry

Download

Created: 12th Nov 2021 at 15:14, Last updated: 12th Nov 2021 at 15:14

_outputFile.R

_p_RNAinVAL

_p_RNAinVAL/_I_01_LabTrials/_S_01_TargetSelect/_A_01_LitData-dry/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_01_LabTrials

Studies: _S_01_TargetSelect

Assays: _A_01_LitData-dry

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Created: 12th Nov 2021 at 15:04, Last updated: 12th Nov 2021 at 15:04

https://blogs.iu.edu/ncgas/2018/12/17/how-evigene-works/

_p_stRT

https://blogs.iu.edu/ncgas/2018/12/17/how-evigene-works/

Creator: Sheri Sanders

Submitter: Maja Zagorscak

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

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Created: 8th Sep 2020 at 20:36

Description of Tags found on transcript headers

_p_stRT

Description of Tags found on transcript headers https://blogs.iu.edu/ncgas/2018/12/17/how-evigene-works/#step3

Creator: Sheri Sanders

Submitter: Maja Zagorscak

Investigations: _I_STRT

Studies: SupplementaryInformation

Assays: Supplementary Information

Created: 13th Mar 2020 at 19:15, Last updated: 8th Sep 2020 at 20:29

/output/supplements/myPlot013.pdf

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

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Created: 19th Mar 2020 at 10:52, Last updated: 11th Apr 2020 at 22:46

/output/supplements/myPlot012.pdf

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

Download

Created: 19th Mar 2020 at 10:52, Last updated: 11th Apr 2020 at 22:46

/output/supplements/myPlot011.pdf

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

Download

Created: 19th Mar 2020 at 10:51, Last updated: 11th Apr 2020 at 22:45

/output/supplements/myPlot010.pdf

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

Download

Created: 19th Mar 2020 at 10:51, Last updated: 11th Apr 2020 at 22:45

/output/supplements/myPlot008.pdf

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

Download

Created: 19th Mar 2020 at 10:51, Last updated: 11th Apr 2020 at 22:44

/output/supplements/myPlot007.pdf

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

Download

Created: 19th Mar 2020 at 10:51, Last updated: 11th Apr 2020 at 22:44

/output/supplements/myPlot006.pdf

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

Download

Created: 19th Mar 2020 at 10:51, Last updated: 11th Apr 2020 at 22:44

/output/supplements/myPlot004.pdf

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

Download

Created: 19th Mar 2020 at 10:51, Last updated: 11th Apr 2020 at 22:43

/output/supplements/myPlot003.pdf

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

Download

Created: 19th Mar 2020 at 10:51, Last updated: 11th Apr 2020 at 22:43

/output/supplements/myPlot002.pdf

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

Download

Created: 19th Mar 2020 at 10:51, Last updated: 11th Apr 2020 at 22:43

/output/supplements/myPlot005.pdf

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

Download

Created: 19th Mar 2020 at 10:51, Last updated: 11th Apr 2020 at 22:43

/scripts/04_summary_stPanTr_v4.Rmd

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

Download

Created: 19th Mar 2020 at 10:54, Last updated: 11th Apr 2020 at 22:09

/scripts/03_stPanTr_components_all.Rmd

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

Download

Created: 19th Mar 2020 at 10:54, Last updated: 11th Apr 2020 at 22:08

/scripts/02_cd-hit-est_cdhit-2d.Rmd

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

Download

Created: 19th Mar 2020 at 10:54, Last updated: 11th Apr 2020 at 22:06

/README.MD

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

Download

Created: 19th Mar 2020 at 10:54, Last updated: 11th Apr 2020 at 21:54

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