Sample types
What is a Sample type?Filters
A patient visit record represents a specific encounter or collection event for a study participant. It provides temporal and contextual information linking biological samples or data files to a particular time point, condition, or intervention.
UID (Text) *, Name (Text) , Scientist (Text) , Protocol (URI) , Type (Text) , Procedure (Text) , Parent (Text) , VisitFacility (Text) , Notes (Text) , SampleCreationDate (Text) , Treatment1 (Text) , Treatment1Type (Text) , Treatment1Route (Text) , Treatment1Dose (Text) , Treatment1DoseUnits (Text) , Treatment2 (Text) , Treatment2Type (Text) , Treatment2Route (Text) , Treatment2Dose (Text) , Treatment2DoseUnits (Text) , Treatment3 (Text) , Treatment3Type (Text) , Treatment3Route (Text) , Treatment3Dose (Text) , Treatment3DoseUnits (Text) , Treatment4 (Text) , Treatment4Type (Text) , Treatment4Route (Text) , Treatment4Dose (Text) , Treatment4DoseUnits (Text) , ExperimentalTimepoint (Text) , Treatment1Parent (Text) , Treatment2Parent (Text)
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A bacteria sample represents a microbial strain used in an experiment, either as an infectious agent or as material isolated from another biological source. It serves as a basis for studying host interactions, gene expression, or microbial composition.
UID (Text) *, Name (Text) , Scientist (Text) , Species (Text) , Morphology (Text) , Strain (Text) , TaxonomyID (Text) , GramStaining (Text) , Barcode (Text) , Qtag (Text)
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An antibody sample contains purified immune proteins that specifically recognize and bind to target molecules. These samples are used in experimental procedures that detect, label, or isolate biological components. Each antibody is defined by its binding specificity, source, and production method.
UID (Text) *, Name (Text) , catalog# (Text) , Vendor (Text) , Analyte (Text) , Clone (Text) , RRID (Text) , CatalogLink (URI)
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A tissue sample represents a portion of biological material collected from an organism. It serves as the source for downstream molecular, cellular, or histological analyses.
UID (Text) *, Name (Text) , Scientist (Text) , SampleCreationDate (Text) , NXProtocol (URI) , GentleMacsProtocol (URI) , CFUProtocol (URI) , Parent (Text) , Type (Text) , Organ (Text) , OrganDetail (Text) , CFU (Text) , CFUUnits (Text) , ArrayNumber (Text) , ExtractionInterval (Text)
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An imaging data file stores visual or spatial information captured from microscopy, radiography, or other imaging systems. It represents the raw or processed image output used for structural or morphological analysis. Typical file types: .tiff, .jpg, .png, .ome.tiff
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Scientist (Text) , Protocol (URI) , SampleCreationDate (Text) , Parent (Text) , Type (Text) , Notes (Text) , Instrument (Text) , DataType (Text) , TotalLungFDGActivity (Text) , TotalLungFDGActivityUnits (Text)
Not specified
A bacteria sample represents a microbial strain used in an experiment, either as an infectious agent or as material isolated from another biological source. It serves as a basis for studying host interactions, gene expression, or microbial composition.
UID (Text) *, Name (Text) , Scientist (Text) , SampleCreationDate (Text) , Protocol (URI) , Parent (Text) , Notes (Text) , Lab (Text)
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A single cell expression matrix file contains processed gene expression counts for individual cells. It represents the normalized matrix used for downstream dimensionality reduction, clustering, or differential expression analysis. Each file integrates thousands of single-cell measurements into one dataset (many→1). Typical file types: .h5ad, .mtx, .csv
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , SampleCreationDate (Text) , Scientist (Text) , DataType (Text) , Protocol (URI) , Parent (Text) , Lab (Text) , Repository (Text) , RepositoryID (Text) , ReferenceGenome_Link (URI) , DemultiplexingTool (Text) , ReferenceGenome (Text)
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A digitally barcoded MTB matrix analysis file contains processed results from barcoded Mycobacterium tuberculosis tracking experiments. It represents summarized abundance or distribution data across bacterial lineages or host conditions. Each file aggregates results from multiple barcoded samples into one matrix (many→1). Typical file types: .csv, .xlsx
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , DataType (Text) , Parent (Text) , Lab (Text) , Scientist (Text) , Checksum_PrimaryData (Text) , BacterialParent (Text) , Checksum_PrimaryType (Text)
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An antibody sample contains purified immune proteins that specifically recognize and bind to target molecules. These samples are used in experimental procedures that detect, label, or isolate biological components. Each antibody is defined by its binding specificity, source, and production method.
UID (Text) *, Name (Text) , Vendor (Text) , Analyte (Text) , Clone (Text) , Fluorophore (Text) , ExperimentType (Text) , Isotype (Text) , CatalogLink (URI)
Not specified
An antibody panel sample represents a curated collection of antibodies used for detection or labeling in assays. It defines the set of reagents applied to measure or visualize specific proteins, cells, or molecular targets. This sample type is used to link AB's together into a single UID
UID (Text) *, Name (Text) , Parent (Text) , Scientist (Text)
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A flow cytometry file stores fluorescence and light-scattering measurements collected from individual cells or particles during cytometric analysis. It represents the digital output of a cytometer used to characterize cell populations and properties. Typical file type: .fcs
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Protocol (URI) , Scientist (Text) , SampleCreationDate (Text) , Parent (Text) , Instrument (Text) , Checksum_PrimaryData (Text) , Software (Text) , Fixation (Text) , Stimulation (Text) , AntibodyParent (Text) , Type (Text) , Repository (Text) , RepositoryID (Text) , Checksum_PrimaryType (Text)
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A flow cytometry analysis file contains processed results derived from raw cytometry data. It represents quantified cell populations, marker expression levels, or gating outcomes used for downstream statistical interpretation. Each file typically aggregates data from multiple raw samples into one analyzed dataset (many→1). Typical file types: .csv, .xlsx, .fcs
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Checksum_PrimaryData (Text) , Scientist (Text) , Parent (Text)
Not specified
A non-human primate sample originates from an organism closely related to humans within the primate order. These samples are collected to study biological processes that share genetic and physiological similarities with human systems. Each reflects controlled collection and handling specific to the species and study design.
UID (Text) *, Name (Text) , DateOfBirth (Text) , Sex (Text) , Species (Text) , Origin (Text) , Facility (Text) , Notes (Text) , Scientist (Text) , Cohort (Text) , Supplier (Text) , Protocol (URI) , Study (Text) , Funder (Text) , TotalCFU (Text) , LungCFU (Text) , LymphNodeCFU (Text) , TotalPathologyScore (Text) , LungPathologyScore (Text) , LymphNodePathologyScore (Text) , CFUUnits (Text) , StudyDesign (Text)
Not specified
A patient visit record represents a specific encounter or collection event for a study participant. It provides temporal and contextual information linking biological samples or data files to a particular time point, condition, or intervention.
UID (Text) *, Name (Text) , Scientist (Text) , Type (Text) , Procedure (Text) , Parent (Text) , Protocol (URI) , Notes (Text) , SampleCreationDate (Text) , Treatment1 (Text) , Treatment1Type (Text) , Treatment1Route (Text) , Treatment1Dose (Text) , Treatment1DoseUnits (Text) , Treatment2 (Text) , Treatment2Type (Text) , Treatment2Route (Text) , Treatment2Dose (Text) , Treatment2DoseUnits (Text) , Treatment3 (Text) , Treatment3Type (Text) , Treatment3Route (Text) , Treatment3Dose (Text) , Treatment3DoseUnits (Text)
Not specified
A tissue sample represents a portion of biological material collected from an organism. It serves as the source for downstream molecular, cellular, or histological analyses.
UID (Text) *, Name (Text) , Scientist (Text) , SampleCreationDate (Text) , Protocol (URI) , Parent (Text) , Type (Text) , Organ (Text) , OrganDetail (Text) , ExtractionInterval (Text) , CFU (Text) , CFUUnits (Text)
Not specified
An imaging data file stores visual or spatial information captured from microscopy, radiography, or other imaging systems. It represents the raw or processed image output used for structural or morphological analysis. Typical file types: .tiff, .jpg, .png, .ome.tiff
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Scientist (Text) , Protocol (URI) , SampleCreationDate (Text) , Parent (Text) , Type (Text) , Notes (Text) , Instrument (Text) , DataType (Text) , TotalLungFDGActivity (Text) , TotalLungFDGActivityUnits (Text)
Not specified
A titer assay data file contains quantitative measurements of antibody or viral concentrations from serial dilution experiments. It represents the processed output used to assess immune response or viral load. Typical file types: .csv, .xlsx
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Protocol (URI) , Scientist (Text) , Parent (Text) , Bead_Vendor (Text) , Bead_coating (Text) , anti_IgX_Ab (Text) , anti_IgX_Ab_vendor (Text) , Detection_Ab (Text) , Detection_Ab_vendor (Text) , Analyzer (Text) , Analyzer_Vendor (Text) , Lab (Text) , Checksum_PrimaryData (Text) , Type (Text) , Dilution (Text) , Checksum_PrimaryType (Text)
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A flow cytometry file stores fluorescence and light-scattering measurements collected from individual cells or particles during cytometric analysis. It represents the digital output of a cytometer used to characterize cell populations and properties. Typical file type: .fcs
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Path_PrimaryData (Text) , Scientist (Text) , SampleCreationDate (Text) , Parent (Text) , Protocol (URI) , Instrument (Text) , Checksum_PrimaryData (Text) , Software (Text) , Fixation (Text) , Fixative (Text) , Stimulation (Text) , AntibodyParent (Text) , Type (Text) , Repository (Text) , RepositoryID (Text) , Checksum_PrimaryType (Text)
Not specified
A titer assay analysis file contains processed results from antibody or viral titer experiments. It represents calculated concentrations or endpoint dilutions used to quantify immune response or viral load. Each file typically summarizes data from serial dilution experiments (many→1). Typical file types: .csv, .xlsx
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Checksum_PrimaryData (Text) , Scientist (Text) , Parent (Text) , Checksum_PrimaryType (Text)
Not specified
An antibody sample contains purified immune proteins that specifically recognize and bind to target molecules. These samples are used in experimental procedures that detect, label, or isolate biological components. Each antibody is defined by its binding specificity, source, and production method.
UID (Text) *, Name (Text) , Vendor (Text) , Analyte (Text) , Clone (Text) , RRID (Text) , Fluorophore (Text) , ExperimentType (Text) , Isotype (Text) , CatalogLink (URI)
Not specified
An antibody panel sample represents a curated collection of antibodies used for detection or labeling in assays. It defines the set of reagents applied to measure or visualize specific proteins, cells, or molecular targets. This sample type is used to link AB's together into a single UID
UID (Text) *, Name (Text) , Parent (Text) , Scientist (Text) , DateRange (Text) , LinkCohortFile (URI)
Not specified
A flow cytometry analysis file contains processed results derived from raw cytometry data. It represents quantified cell populations, marker expression levels, or gating outcomes used for downstream statistical interpretation. Each file typically aggregates data from multiple raw samples into one analyzed dataset (many→1). Typical file types: .csv, .xlsx, .fcs
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Parent (Text) , Protocol (URI) , Software (Text) , Scientist (Text)
Not specified
An imaging data file stores visual or spatial information captured from microscopy, radiography, or other imaging systems. It represents the raw or processed image output used for structural or morphological analysis. Typical file types: .tiff, .jpg, .png, .ome.tiff
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (Text) , Scientist (Text) , Protocol (URI) , SampleCreationDate (Text) , Parent (Text) , Type (Text) , Notes (Text) , Instrument (Text) , DataType (Text) , Checksum_PrimaryData (Text) , Checksum_PrimaryType (Text)
Not specified
An MDL file represents a model definition or machine learning output used for predictive analysis. It contains parameters, trained weights, or configuration metadata describing a computational model. Each file typically summarizes results from training on multiple datasets (many→1). Typical file types: .mdl, .json, .h5
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Scientist (Text) , Type (Text) , TrainingDatasets (URI) , ValidationDatasets (Text) , Protocol (URI)
Not specified
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Scientist (Text) , Parent (Text) , Notes (Text) , Protocol (Text) , Repository (Text) , RepositoryLink (Text)
Not specified
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Scientist (Text) , Type (Text) , Parent (Text) , SourceDataFile (Text) , Repository (Text) , RepositoryLink (Text)
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UID (Text) *, File_PrimaryData (Text) , Scientist (Text) , Type (Text) , Notes (Text) , Parent (Text) , FluorescentLabels (Text) , ScanMode (Text) , Targets (Text)
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UID (Text) *, Name (Text) , Protocol (URI) , Species (Text) , Scientist (Text) , Type (Text) , Source (Text) , Parent (Text) , TreatmentType (Text) , Treatment1 (Text) , Treatment1Reference (Text) , Treatment1Dose (Text) , Treatment1DoseUnits (Text)
Not specified
UID (Text) *, Name (Text) , File_PrimaryData (Text) , Scientist (Text) , SampleCreationDate (Text) , Protocol (URI) , Link_PrimaryData (URI) , Parent (Text) , DataType (Text) , SequencingType (Text) , Sequencer (Text) , F_bp (Text) , R_bp (Text) , NumReads (Text) , LibraryStrategy (Text) , LibrarySource (Text) , LibrarySelection (Text) , ExtractedMolecule (Text) , Checksum_PrimaryData (Text) , File_SecondaryData (Text) , Link_SecondaryData (URI) , LibraryDesign (Text) , Accession (Text) , Repository (Text) , Checksum_PrimaryType (Text)
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UID (Text) *, Name (Text) , File_PrimaryData (Text) , Scientist (Text) , SampleCreationDate (Text) , Protocol (URI) , Parent (Text) , Link_PrimaryData (URI) , DataType (Text) , SequencingType (Text) , Sequencer (Text) , F_bp (Text) , R_bp (Text) , LibraryStrategy (Text) , LibrarySource (Text) , LibrarySelection (Text) , ExtractedMolecule (Text) , Checksum_PrimaryData (Text) , File_SecondaryData (Text) , Link_SecondaryData (URI) , Checksum_SecondaryData (Text) , LibraryDesign (Text) , Checksum_PrimaryType (Text)
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