Assays

What is an Assay?

4 Assays matching the given criteria: (Clear all filters)

Submitter:

WGCNA Prognostic Hallmark Genes

Consensus Hallmark Annotation

A Weighted Gene Co-Expression Network Analysis (WGCNA) of breast cancer prognostic genes (derived from transcriptome data from the TCGA Genomics Data Commons (GDC) data portal (https://portal.gdc.cancer.gov/)), and cancer hallmark genes.

Submitter: Katy Wolstencroft

Biological problem addressed: Biological Network Analysis

Investigation: Cancer Hallmark Consensus

Study: Prognostic and Hallmark Gene Networks

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: FPKM value of breast cancer patient, Prognostic-hallmark genes of GO1 with log trans..., Prognostic-hallmark genes of GO2 with log trans..., Prognostic-hallmark genes of GO3 with log trans..., Prognostic-hallmark genes of GO4 with log trans...

Snapshots: No snapshots

Created: 22nd Jan 2021 at 16:09, Last updated: 5th Mar 2021 at 17:57

Jaccard Index Prognostic Hallmark Genes

Consensus Hallmark Annotation

A Jaccard Index of the overlap between prognostic and hallmark genes for 17 cancer types across different mapping schemes. The impact of selecting different mapping schemes was assessed by pairwise comparisons where there were 5 or more shared genes.

Submitter: Katy Wolstencroft

Biological problem addressed: Biological Network Analysis

Investigation: Cancer Hallmark Consensus

Study: Prognostic and Hallmark Gene Networks

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: Abbreviations of 17 cancer types, Jaccard index score, prognostic genes of 17 cancer types

Snapshots: No snapshots

Created: 22nd Jan 2021 at 16:13, Last updated: 5th Mar 2021 at 10:05

Annotation Consensus and GO Consensus

Consensus Hallmark Annotation

No description specified

Submitter: Katy Wolstencroft

Biological problem addressed: Annotation

Investigation: Cancer Hallmark Consensus

Study: Comparing Cancer Hallmark Descriptions

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: GO Consensus terms, Genes annotated to selected GO terms belonging ..., Hallmark genes, Mapping from Gene Ontology terms to individual ..., Mapping from MSigDB pathways to GO terms, Mapping from pathways to individual cancer hall..., The number of genes annotated to individual can...

Snapshots: No snapshots

Created: 22nd Jan 2021 at 16:07, Last updated: 9th Feb 2021 at 09:19

Analysing Changes to GO Biological Process

Consensus Hallmark Annotation

No description specified

Submitter: Katy Wolstencroft

Biological problem addressed: Biological Network Analysis

Investigation: Cancer Hallmark Consensus

Study: Evolution of Gene Ontology Terms

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: Edge data of GO terms in 2012, Edge data of GO terms in 2016, GO hierarchical network comparison between methods, Gene product count of GO terms in June 2012., Species data in June,2012, Term description and ID in June 2016, Term description and ID in June,2012, The number of annotations belongs to selected G..., species data in June, 2016, species data of GO in 2016, species data of GO in 2016

Snapshots: No snapshots

Created: 22nd Jan 2021 at 16:15, Last updated: 9th Feb 2021 at 09:19

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