output/hq_lq_isoforms.fasta.sam.log
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_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_IsoSeq/_A_02_cDNAcupcake-dry/

SEEK ID: https://fairdomhub.org/documents/3786?version=1

Filename: output/hq_lq_isoforms.fasta.sam.log

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[M::mm_idx_gen::12.315*1.88] collected minimizers
[M::mm_idx_gen::16.729*5.31] sorted minimizers
[M::main::16.736*5.31] loaded/built the index for 17212 target sequence(s)
[M::mm_mapopt_update::18.966*4.80] mid_occ = 244
[M::mm_idx_stat] kmer size: 15; skip: 5; is_hpc: 0; #seq: 17212
[M::mm_idx_stat::20.041*4.60] distinct minimizers: 63114751 (61.31% are singletons); average occurrences: 2.500; average spacing: 3.082
[M::worker_pipeline::68.038*21.17] mapped 125836 sequences
[M::main] Version: 2.17-r941
[M::main] CMD: minimap2 -t 30 -ax splice -uf --secondary=no -C5 -O6,24 -B4 ../input/Pcitri_genome/Planococcus_citri_Pcitri.v1.scaffolds.fa ../input/hq_lq_isoforms.fasta
[M::main] Real time: 68.318 sec; CPU: 1440.366 sec; Peak RSS: 16.694 GB

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