Data files
Query
Created At
Tag
data652
pISA351
demo246
pISA-tree54
Enzyme39
isothermal titration calorimetry33
caffeine28
Pharmacokinetics28
Docking25
Binding22
Drug discovery16
Proteomics14
Kinetics12
Data Management8
Induced Fit8
Metabolomics8
Multiple Injection8
Transcriptomics8
UV-Vis Spectrophotometry8
Arabidopsis7
iTRAQ7
Sulfolobus solfataricus7
acetic acid6
chemostat6
KEGG6
Bacillus subtilis5
biomass4
chemical markup language4
deep eutectic solvents4
drug design4
Python4
Selwyn test4
Specific Activity4
Validation4
70mM3
ADMET3
Arrhenius and Vogel–Fulcher–Tammann-Hesse models3
Data Integration3
development3
dynamic light scattering3
enzyme kinetics3
FAIR3
fair data3
Homogeneity of Sample3
KEGG2SBTOOLBOX23
microarray3
Modelling3
Pals3
pulse3
Reactome3
recurrent Single Injection3
sc-SynO3
scRNA-Seq3
SEEK3
Workflow3
acidogenesis2
allosteric regulation2
annotation2
API2
Automated Workflow2
butyric acid2
carbon sources2
clinical studies2
community2
Correlation analysis2
Cytoscape2
data retrieval2
environmental conditions2
Epidemiology2
gene annotation2
in silico2
ISA2
literature2
M. pneumoniae2
Mass spectrometry2
Matlab2
metadata2
mRNA decay2
Protein2
public health studies2
R2
RNAseq2
SBTOOLBOX22
sequencing2
SPINE2
Taverna2
Thermodynamics2
100mM1
50mM1
80mM1
absolute values1
aerobiosis1
Affymetrix1
amino acid1
Amino acid uptake1
anaerobic1
Arabidopsis thailana1
Arrhenius model1
Bioinformatics1
butanol producing strain e.coli1
CAC1
Clock1
Clocks1
Clostridium1
cofactor1
coil length1
combine1
Comparative modeling1
comparison1
continuous culture1
Control Analysis1
COVID-191
Data analysis1
data and model management1
data citation1
Data Dictionary1
Data logger1
DES1
dynamic model1
Enyzme Kinetics1
enzyme activity measurement1
enzymes1
epidemic1
Escherichia coli1
experiment1
fair publishing1
FBA1
feed composition1
feed switch1
figures; Tables1
GC-MS1
gel1
gene co-expression analysis1
gene expression1
Graph Analysis1
hplc thiol analysis1
input1
intera1
interaction partner1
kcat1
Km1
l-fucose1
lactate dehydrogenase1
LC MS1
leaf area1
lepto1
LXX1
Master file1
MCAD1
membrane transport1
metabolic shift1
Metadata table1
mice1
Microbial Ecology1
Microbiology1
mineral1
mitochondrial carrier1
mitochondrial transporter1
model curation1
Molecular Dynamics1
NAD1
NAD+ transporters1
Network Analysis1
networking1
oxygen1
PAINS1
pathway1
PC1
PDB1
PFL1
PGK1
pH-shift1
phosphorylation1
Protocol development1
pyruvate kinase1
quenching temperature1
reactions1
relative measurements1
Report1
repression1
respiration1
RNA1
RobOKoD redesigned1
SBML1
seek tutorial1
SLC25A511
solute carrier family 251
solventogenesis1
space science1
step1
Stickland reactions1
stoichiometric equation1
Stressosome1
Systems Biology1
T. brucei1
TCA1
Template1
transcriptiption regulation1
Transcriptome1
transformer1
transport1
tutorial1
viscosity1
vmax1
Vogel–Fulcher–Tammann-Hesse model1
workshop1
yeast1
More...
Submitter
Marko Petek351
Andrej Blejec303
BioData SynthSys130
Maja Zagorscak92
Gudrun Gygli58
Malte Herold43
Ziva Ramsak42
Dikshant Pradhan40
Ina Poehner33
Sahar Hassani31
Matthias König30
Andrew Millar29
Yi Chen29
Jacky Snoep28
Karina Dale26
Dawie van Niekerk25
Jan-Willem Veening24
Zdenka Bartosova24
Daniel Seaton24
Niels Zondervan23
Maksim Zakhartsev22
Alexey Kolodkin22
Sebastian Curth19
Olga Krebs18
Katy Wolstencroft14
Martijn Bekker13
Natalia Gebara13
Xiaokang Zhang12
Praveen kumar Sappa11
Margrete Solheim11
Jon Olav Vik11
Leif Steil10
Theresa Kouril10
Jacqueline Wolf10
Markus Wolfien10
Pasquale Linciano10
Helge Stark9
Yang Jin9
Marta Eide9
Runyu Liang9
Graceline Tina Kirubakaran8
Anette McLeod7
Paul Heusden6
Holger Janssen6
Dong-Hyun Kim6
Hannah O'Keefe6
Anne-Marie Galow6
Julia Scheel6
Katja Bettenbrock5
Sonja Steinsiek5
Ulf Liebal5
Sandra Maass5
Anna Feldman-Salit5
Jurgen Haanstra5
Thomas Rimpf5
Natalie Stanford5
Fatemeh Zamanzad Ghavidel5
Jennifer Zehner5
Ioannis Metaxas5
Gabriela Loscalzo5
Hans V. Westerhoff4
Jay Moore4
Wolfgang Müller4
Hanna Meyer4
Abeer Fadda4
Franco du Preez4
Maja Rey4
Daniel Hönicke4
Koen van Grinsven4
Stefan Albaum4
Ulrike Wittig4
Martin Golebiewski4
Inga Leena Angell4
Dorothee Houry4
Theresa Bender4
Karel Sedlar4
Michael Kohlstedt3
Antoine Buetti-Dinh3
Fekadu Yadetie3
Evert Bosdriesz3
Hong Yang3
Matthew Rolfe2
Stefan Henrich2
Alejandro Leroux2
Federico Rojas2
Silvio Hering2
Araz Zeyniyev2
Quyen Nguyen2
Eivind Almaas2
Thomas Harvey2
Cornelius Erbelding2
Chloe Spalding2
Harald Kusch2
Xiangcheng Li2
Sofia Doello2
Faiz Khan2
Bas Teusink1
Vitor Martins dos Santos1
Michael Ederer1
Maike Bartholomae1
Fiona Achcar1
Antje Sieg1
John Raedts1
Wayne Aubrey1
Ron Henkel1
Fabian Grammes1
Vasundra Toure1
Magny Sidsel Thomassen1
Roel Van Driel1
Lutz Brusch1
Jasper Koehorst1
Huseyin Tas1
Mohamed El Hajjami1
Ines Heiland1
Baudoin Delépine1
Angeles Hueso-Gil1
DAVID RODRIGUEZ ESPESO1
Hannah Kinmonth-Schultz1
Petra Engele1
PoLiMeR_user Martines_data1
Birger Wolter1
Maria Paola Costi1
Felix Ott1
Chris Wilson1
Sophie Klopfenstein1
More...
Project
TRANSLUCENT716
_p_RNAinVAL351
_p_stRT338
PlaSMo model repository130
DigiSal82
pISA-tree57
Systems toxicology of Atlantic cod55
GenoSysFat54
SysMO-LAB52
Millar group50
Towards Reproducible Enzyme Modeling47
SysMetEx44
BaCell-SysMO43
NMTrypI - New Medicines for Trypanosomatidic Infections43
MOA - Multiomics analysis of potato response to Potato virus Y (PVY) infection42
COSMIC35
SUMO30
Multi-Scale Models for Personalized Liver Function Tests (LiSyM-MM-PLF)30
Consensus Hallmark Annotation29
IMPAcTB28
SysMO DB26
SulfoSys - Biotec26
Noisy-Strep24
MycoSynVac - Engineering Mycoplasma pneumoniae as a broad-spectrum animal vaccine23
SulfoSys22
Molecular characterization and angiogenic properties of extracellular vesicles in healthy and preeclamptic amniotic fluid19
ROS detailed model for MSB manucript18
SilicoTryp17
TiMet17
Whole body modelling of glucose metabolism in malaria patients16
iRhythmics16
FAIRDOM14
ZucAt13
Computational pathway design for biotechnological applications13
MIT SRP12
MOSES10
CML for thermophysical properties of mixtures10
Molecular Systems Biology9
COVID-19 related studies and tools in Germany7
BioZEment 2.05
CEPOPA - Development of sustainable chemoenzymatic processes for optically pure amines from alcohols or alkynes5
Overexpression of microRNAs miR-25-3p, miR-185-5p and miR-132-3p in Late Onset Fetal Growth Restriction, Validation of Results and Study of the Biochemical Pathways Involved5
STREAM4
de.NBI-SysBio4
Kinetics on the move - Workshop 20164
Colosys4
MESI-STRAT4
PoLiMeR - Polymers in the Liver: Metabolism and Regulation4
NAMPT affinity4
Clostridium beijerinckii pan-genome4
IMOMESIC3
EmPowerPutida3
Mechanism based modeling viral disease ( COVID-19 ) dynamics in human population3
nfdi4health - German National Research Data Infrastructure for Personal Health Data3
Scalp Acupuncture and Treadmill Training Inhibits Neuronal Apoptosis Through Activating cIAP1 in Cerebral Ischemia Rats3
Electroacupuncture preconditioning reduces oxidative stress in the acute phase of cerebral ischemia-reperfusion in rats by regulating iron metabolism pathways3
WineSys2
FAIRDOM user meeting2
WG Infrastructure for Translational Research2
Mathematical modelling of the antibiotic-induced morphological transition of Pseudomonas aeruginosa2
INCOME2
SCyCode The Autotrophy-Heterotrophy Switch in Cyanobacteria: Coherent Decision-Making at Multiple Regulatory Layers2
Outreach - Breast Cancer RStudio-Shiny application2
Outreach - Senescence RStudio-Shiny application2
Mass spectrometry proteomics for biomarker discovery2
Xenophiles Systems Biology2
Supplemental Data for "Why did the eyewall replacement cycle in Trami terminate rapidly? "2
SASKit: Senescence-Associated Systems diagnostics Kit for cancer and stroke2
The Effect of Nape Acupuncture Combined with Rehabilitation Training on Dysphagia After Stroke: A Meta-analysis2
Manchester Institute for Biotechnology1
ICYSB 2015 - International Practical Course in Systems Biology1
Early Metabolic Injury (LiSyM-EMI - Pillar I)1
Chronic Liver Disease Progression (LiSyM-DP - Pillar II)1
Regeneration and Repair in Acute-on-Chronic Liver Failure (LiSyM-ACLF - Pillar III)1
LiSyM Core Infrastructure and Management (LiSyM-PD)1
Liver Function Diagnostics (LiSyM-LiFuDi - Pillar IV)1
Model Guided Pharmacotherapy In Chronic Liver Disease (LiSyM-MGP)1
The Hedgehog Signalling Pathway (LiSyM-JGMMS)1
Molecular Steatosis - Imaging & Modeling (LiSyM-MSIM)1
HUMET Startup1
SEEK tutorial for DigiSal1
Training Hunfeld1
COMBINE Multicellular Modelling1
POP - the Parameter Optimisation Problem1
Regulation of flowering time in natural conditions1
Thesis1
C1Pro1
NAD phylogeny1
Outreach - Simulation of breast cancer development using an agent based modelling approach1
Outreach - Simulation of cellular senescence using an agent based modelling approach1
Simulation Foundries1
FAIRDOM Community Workers1
MIX-UP1
COVID-19 Disease Map1
Test Project (dummy)1
An overview of systematic reviews of treatment of polycystic ovary syndrome with Chinese medicine1
Non equilibrium thermodynamics1
Book on Thermodynamics, and kinetics1
Coastal Data1
More...
Programme
SysMO979
NIBSys788
SynthSys184
The Digital Salmon92
dCod 1.0: decoding systems toxicology of cod55
Independent Projects51
ERASysAPP49
Gygli Group48
Drug development for neglected parasitic diseases43
LiSyM - Systems Medicine of the Liver30
SARCHI: Mechanistic modelling of health and epidemiology29
Hallmarks of cancer 29
IMPAcTB28
e:Bio26
iPlacenta: A European Union Horizon 2020 innovative training network (ITN)24
de.NBI Systems Biology Service Center (de.NBI-SysBio)22
Model repository for M4 (Make Me My Model) clients of ISBE22
FAIRDOM16
MIT Superfund Research12
Journals9
nfdi4health - German National Research Data Infrastructure for Personal Health Data9
BioZEment5
Hellenic Foundation for Research and Innovation - Supporting academic Staff and Researchers5
e:med4
Druglogics4
Clostridium beijerinckii4
Newcastle University Systems Modelling of Ageing3
Breast Cancer Simulation3
Combined therapy involving Scalp Acupuncture and Treadmill Training Inhibits Neuronal Apoptosis in Cerebral Ischemia Rats by regulating cIAP13
Electroacupuncture preconditioning reduces oxidative stress in the acute phase of cerebral ischemia-reperfusion in rats by regulating iron metabolism pathways3
Mathematical modelling of the morphological transition of Pseudomonas aeruginosa2
Cancer drug discovery preclinical research2
ISBE.NL service programme2
Thermodynamics and kinetics for Biology2
Supplemental Data for "Why did the eyewall replacement cycle in Trami terminate rapidly? "2
DFG founded projects2
The Effect of Nape Acupuncture Combined with Rehabilitation Training on Dysphagia After Stroke2
HUMET1
COMBINE (Computational Modeling in Biology Network)1
Era CoBioTech1
Thesis AHG 20191
Disease Maps1
An overview of systematic reviews of treatment of polycystic ovary syndrome with Chinese medicine1
More...
Creator
Marko Petek354
Falko Krause327
Andrej Blejec302
Dani Valverde219
BioData SynthSys130
Maja Zagorscak92
Jost Ludwig83
Jacky Snoep63
Lina Patricia Barreto Parra58
Gudrun Gygli57
Andrew Millar50
Felix Ott44
Malte Herold43
Yang Jin38
Fabian Grammes37
Dikshant Pradhan35
Jon Olav Vik34
Ina Poehner33
Rebecca Wade31
Matthias König30
Yi Chen29
Yin Hoon Chew28
Daniel Seaton27
Per Bruheim26
Zdenka Bartosova26
Dawie van Niekerk25
Joanna Panecka-Hofman25
Jan-Willem Veening24
Theresa Kouril23
Hans V. Westerhoff22
Maksim Zakhartsev22
Alexey Kolodkin22
Sebastian Curth19
Thomas Harvey19
Karina Dale18
Katy Wolstencroft16
Raju Prasad Sharma16
Sahar Hassani16
Olga Krebs15
Praveen kumar Sappa15
Matthew Rolfe14
Niels Zondervan13
Lu Shen13
Natalia Gebara13
Martijn Bekker12
Graceline Tina Kirubakaran12
Xiaokang Zhang12
Silvia Petrezselyova11
Margrete Solheim11
Markus Wolfien11
Jacqueline Wolf10
Anne-Marie Galow10
Xinmeng Xu10
Pasquale Linciano10
Paul Heusden9
Helge Stark9
Juergen Pleiss9
Runyu Liang9
Joerg Stuelke8
Phil Wright7
Holger Janssen7
Trong Khoa Pham7
Anette McLeod7
Ulrike Wittig7
Tomas Fiedler6
Sonja Steinsiek6
Wolfgang Müller6
Sandra Maass6
Dong-Hyun Kim6
Gareth Gillard6
Virginie Mengin6
Hannah O'Keefe6
Julia Scheel6
Katja Bettenbrock5
Ulf Liebal5
Anna Feldman-Salit5
Jurgen Haanstra5
Thomas Rimpf5
Natalie Stanford5
Antoine Buetti-Dinh5
Inga Leena Angell5
Fatemeh Zamanzad Ghavidel5
Christian Bauer5
Ziva Ramsak5
Jennifer Zehner5
Pål A. Olsvik5
Dorothee Houry5
Theresa Bender5
Eleni Konia5
Gabriela Loscalzo5
Jaromir Zahrádka4
Hanna Meyer4
Abeer Fadda4
Alejandro Leroux4
Franco du Preez4
Michael Kohlstedt4
Daniel Hönicke4
Koen van Grinsven4
Stefan Albaum4
Magny Sidsel Thomassen4
Mohamed El Hajjami4
Marta Eide4
Karel Sedlar4
Dietmar Schomburg3
David Hodgson3
Jay Moore3
Guido Hasenbrink3
Alexander Ter Beek3
Maja Rey3
Inge Jonassen3
Fekadu Yadetie3
Anders Goksøyr3
Evert Bosdriesz3
Odd André Karlsen3
Saptarshi Bej3
Michael Hecker2
Uwe Voelker2
Trond Ellingsen2
Stuart Owen2
Sara Jabbari2
Øyvind Jakobsen2
Per Bruheim2
Håvard Sletta2
Anders Øverby2
Sunniva Hoel2
Sven Even Borgos2
Michael Ederer2
Stefan Stagge2
Rick Lewis2
Alexander Wentzel2
Stefan Henrich2
Federico Rojas2
Silvio Hering2
Araz Zeyniyev2
Quyen Nguyen2
Ulrike Mäder2
Eivind Almaas2
Ansgar Poetsch2
Soeren Bellenberg2
Arne Gjuvsland2
Martin Golebiewski2
Sandve Simen2
Jacob Seilø Torgersen2
Cornelius Erbelding2
Luis Serrano2
Maria Lluch2
Eva Yus2
Alexander Graf2
Katja Baerenfaller2
Chloe Spalding2
Uriel Urquiza Garcia2
Ines Heiland2
Harald Kusch2
Matthias Löbe2
Carsten Oliver Schmidt2
Moritz Lehne2
Aliaksandra Shutsko2
Maria Paola Costi2
Xiangcheng Li2
Sofia Doello2
Faiz Khan2
Joost Aerts2
Oscar Kuipers1
Bas Teusink1
Maria Jonsson1
Vitor Martins dos Santos1
David Rand1
David Wild1
Elizabeth Wellington1
Eriko Takano1
Gregory Challis1
Juan-Francisco Martin1
Kay Nieselt1
Lubbert Dijkhuizen1
Maggie Smith1
Nigel Burroughs1
Preben Krabben1
Rainer Breitling1
Wolfgang Wohlleben1
Bettina Siebers1
Walid Omara1
Carole Goble1
M. Tauqeer Alam1
William Gaze1
Brent Kiernan1
Roxane Legaie1
Anthony Palathingal1
R Jansen1
Jens Reuther1
Antonio Rodríguez-García1
Louise Thomas1
Leif Steil1
Sebastian Henkel1
Ibrahim Mehmeti1
Susanne Gerber1
Clara Navarrete1
Jan Maarten van Dijl1
Morris Swertz1
Maria Elena Merlo1
Colin Harwood1
Maike Bartholomae1
joseph newman1
Priyanka Nannapaneni1
Wouter Kuit1
Barbara Bakker1
Fiona Achcar1
Antje Sieg1
Ruben Mars1
Eduard Kerkhoven1
John Raedts1
Wayne Aubrey1
Klaas Hellingwerf1
Ron Henkel1
Katharina Kruse1
Rostyslav Kuzyakiv1
Dagmar Waltemath1
Irina Medvedeva1
Lars Snipen1
Dominic Nanton1
Vasundra Toure1
Andreas Albersmeier1
Roel Van Driel1
Jan Boren1
Adil Mardinoglu1
Jasper Koehorst1
Huseyin Tas1
Jan Hasenauer1
Vânia Pobre1
Peter Schaap1
Kathrin Thedieck1
Tobias Anzeneder1
Mathias Ziegler1
Baudoin Delépine1
Janina Leyk1
Terry G.J. Derks1
Eileen Marie Hanna1
Angeles Hueso-Gil1
DAVID RODRIGUEZ ESPESO1
Hannah Kinmonth-Schultz1
Petra Engele1
PoLiMeR_user Martines_data1
Alejandra Gilabert1
Hong Yang1
Birger Wolter1
Leonard Schmiester1
Johannes Darms1
Chris Wilson1
Sophie Klopfenstein1
More...
Assay Type
Experimental Assay Type738
Model Analysis Type573
Gene Regulatory Network132
Transcriptomics37
Metabolic Network30
Proteomics29
http://www.mygrid.org.uk/ontology/JERMOntology#metabolomics28
Metabolite Profiling25
Metabolomics17
Gene Expression Profiling13
Enzymology12
Cultivation Experiment11
MicroRNA Profiling11
Organism or Strain Characteristics11
Protein Quantification11
Metabolism9
Enzymatic Assay8
Metabolite Concentration7
Transcriptional Profiling7
Gene Expression5
RNA-seq Profiling5
Genome Scale4
Protein Expression Profiling4
Discontinuous Enzymatic3
Extracellular Metabolite Concentration3
Genomics3
Glucose Pulse3
Interactomics2
Intracellular Metabolite Concentration2
Cell Count1
Cell Cycle1
Signal Induction1
More...
Technology Type
Technology Type736
Mass Spectrometry33
Next generation sequencing32
http://www.mygrid.org.uk/ontology/JERMOntology#metabolomics28
Liquid Chromatography Mass Spectrometry19
Microarray19
Gas Chromatography Mass Spectrometry11
Custom Array10
Enzymatic Activity Measurements10
Rna-seq10
Tandem Mass Spectrometry8
HPLC7
NMR7
Orbitrap Velos7
qPCR7
Imaging6
Liquid Chromatography-tandom Mass Spectrometry6
qRT-PCR5
Initial Rate Experiment4
Isotope Ratio Mass Spectrometry3
ChIP-on-chip2
Electrophoresis2
Microscopy2
2D Gel Electrophoresis1
Chemostat Measurement1
Chromatography1
Gas Chromatography1
Gel Electrophoresis1
Molecule Labelling1
UPLC1
More...
2619
Data files visible to you, out of a total of 4815
SAP4, SAP155, SAP185, SAP190, NHA1, SIT4
Creator: Silvia Petrezselyova
Submitter: The JERM Harvester