output/g14825_exon4repl-BLASTp.txt

Version 1

BLASTP 2.8.1+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro
A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and
David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new
generation of protein database search programs", Nucleic
Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Stephen
F. Altschul, John C. Wootton, E. Michael Gertz, Richa
Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and
Yi-Kuo Yu (2005) "Protein database searches using
compositionally adjusted substitution matrices", FEBS J.
272:5101-5109.


RID: ZDPXC2D6015


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
           178,521,967 sequences; 65,218,983,340 total letters
Query= g14825.t1 planococcus_citri_pcitriv1_core_32_85_1 protein

Length=180


                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

XP_014371818.1 PREDICTED: farnesyl pyrophosphate synthase 1-li...  50.4    6e-04
KPJ18335.1 Farnesyl pyrophosphate synthase 1 [Papilio machaon]     50.4    6e-04

ALIGNMENTS
>XP_014371818.1 PREDICTED: farnesyl pyrophosphate synthase 1-like [Papilio machaon]
Length=375

 Score = 50.4 bits (119),  Expect = 6e-04, Method: Compositional matrix adjust.
 Identities = 39/132 (30%), Positives = 59/132 (45%), Gaps = 11/132 (8%)

Query  21   SYYCTVLPFRLAAYAARRSELPFNDEIHDILKDIAQLLKLYNDGVALAIGGAAPPGKDLD  80
            +YYC  +P  LA     +   P  + I DI++D+  L ++ ND   L     +  GK   
Sbjct  219  TYYCLEIPIMLALILCEKDNEPTFERIRDIVRDVGALYQMMNDYTDLT-NEESKSGKT-G  276

Query  81   EDIKEKKFTFTLTYLMNTATDEDKDFIVNNYG--DVETTRKLMEKYKIAEGFEQYR----  134
             DI+E K TF     M  AT E K+    +YG  D E  +++   YK  +    Y+    
Sbjct  277  SDIQEGKCTFFAVKAMERATPEQKEIFKASYGSWDPENVKRIRNLYKELDLISLYKEQHN  336

Query  135  ---NDLSKSINT  143
               N   K+IN+
Sbjct  337  FKYNQFMKNINS  348


>KPJ18335.1 Farnesyl pyrophosphate synthase 1 [Papilio machaon]
Length=376

 Score = 50.4 bits (119),  Expect = 6e-04, Method: Compositional matrix adjust.
 Identities = 39/132 (30%), Positives = 59/132 (45%), Gaps = 11/132 (8%)

Query  21   SYYCTVLPFRLAAYAARRSELPFNDEIHDILKDIAQLLKLYNDGVALAIGGAAPPGKDLD  80
            +YYC  +P  LA     +   P  + I DI++D+  L ++ ND   L     +  GK   
Sbjct  220  TYYCLEIPIMLALILCEKDNEPTFERIRDIVRDVGALYQMMNDYTDLT-NEESKSGKT-G  277

Query  81   EDIKEKKFTFTLTYLMNTATDEDKDFIVNNYG--DVETTRKLMEKYKIAEGFEQYR----  134
             DI+E K TF     M  AT E K+    +YG  D E  +++   YK  +    Y+    
Sbjct  278  SDIQEGKCTFFAVKAMERATPEQKEIFKASYGSWDPENVKRIRNLYKELDLISLYKEQHN  337

Query  135  ---NDLSKSINT  143
               N   K+IN+
Sbjct  338  FKYNQFMKNINS  349


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Nov 19, 2018  6:38 AM
  Number of letters in database: 65,218,983,340
  Number of sequences in database:  178,521,967

Lambda      K        H
   0.316    0.134    0.382 
Gapped
Lambda      K        H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 178521967
Number of Hits to DB: 7054547
Number of extensions: 3861
Number of successful extensions: 803
Number of sequences better than 0.01: 0
Number of HSP's better than 0.01 without gapping: 0
Number of HSP's gapped: 805
Number of HSP's successfully gapped: 0
Length of query: 180
Length of database: 65218983340
Length adjustment: 140
Effective length of query: 40
Effective length of database: 40225907960
Effective search space: 1609036318400
Effective search space used: 1609036318400
T: 21
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 111 (47.4 bits)
ka-blk-alpha gapped: 1.9
ka-blk-alpha ungapped: 0.7916
ka-blk-alpha_v gapped: 42.6028
ka-blk-alpha_v ungapped: 4.96466
ka-blk-sigma gapped: 43.6362