Assays

2 Assays visible to you, out of a total of 2

Millar group

RNA timeseries data for Arabidopsis Col wild-type plants and clock mutants, as separate mean and SD files. The raw data is available on BioDare.ed.ac.uk, and is linked as 'Attribution' from elsewhere on FAIRDOMHub.

Submitter: Andrew Millar

Assay type: Q_PCR

Technology type: qRT-PCR

Investigation: Absolute units for proteins in Arabidopsis cloc...

Study: Predicting absolute levels of clock proteins wi...

Organisms: Arabidopsis thaliana : Col-0 wild type (wild-type / wild-type), Arabidopsis thaliana : prr7-3 prr9-1 (T-DNA insertion PRR9;T-DNA insertion PRR7 / 28h circadian rhythm), Arabidopsis thaliana, Arabidopsis thaliana

SOPs: No SOPs

Data files: Processed TiMet WP1.1a RNA data, SD, Processed TiMet WP1.1a RNA data, mean

Snapshots: No snapshots

Created: 18th Aug 2022 at 15:48, Last updated: 19th Dec 2024 at 11:28

TiMet RNA timeseries data and starting models

Millar group

The starting models are included here in their original forms, the P2011 model as an SBML L3V1 model file, and the KF2014 model of Fogelmark et al. shared as SBML; both prepared by Uriel Urquiza.

Submitter: Andrew Millar

Biological problem addressed: Gene Regulatory Network

Investigation: Absolute units in Arabidopsis clock models up t...

Study: Rescaling the P2011 model to match RNA data

Organisms: No organisms

Models: Arabidopsis clock model P2011.1.2, F2014 all parameters in SBML, F2014.1 - PLM_1030, version 1, SUBMITTED, F2014.1.2 with stepfunction and 1 hidden item

SOPs: No SOPs

Data files: Processed TiMet WP1.1a RNA data, SD, Processed TiMet WP1.1a RNA data, mean

Snapshots: No snapshots

Created: 6th Dec 2017 at 21:48, Last updated: 2nd Aug 2021 at 21:48

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