_A_09_annotation-GFFmerged

Short Name: 09_annotation-GFFmerged
Assay Class: DRY
Assay Type: GFFmerged
Title: Pan-transcriptome fasta files annotation
Description: Annotation of pan-transcriptome and re-annotation of cultivar-specific transcriptomes
pISA Assay creation date: 2020-03-11
pISA Assay creator: Maja Zagorscak
Phenodata: None
Featuredata:
Data:

DOI: 10.15490/fairdomhub.1.assay.1268.2

Created at: 12th Apr 2020 at 14:34

Contents

/input/path_to_files.txt

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

  • path_to_files.txt

/output/annot_stCuSTr-D_aa_all.zip

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

  • annot_stCuSTr-D_aa_all.zip

/output/annot_stCuSTr-D_aa_representatives.zip

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

  • annot_stCuSTr-D_aa_representatives.zip

/output/annot_stCuSTr-D_cds_all.zip

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

  • annot_stCuSTr-D_cds_all.zip

/output/annot_stCuSTr-D_cds_representatives.zip

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

  • annot_stCuSTr-D_cds_representatives.zip

/output/annot_stCuSTr-D_tr_all.zip

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

  • annot_stCuSTr-D_tr_all.zip

/output/annot_stCuSTr-D_tr_representatives.zip

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

  • annot_stCuSTr-D_tr_representatives.zip

/output/annot_stCuSTr-P_aa_all.zip

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

  • annot_stCuSTr-P_aa_all.zip

/output/annot_stCuSTr-P_aa_representatives.zip

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

  • annot_stCuSTr-P_aa_representatives.zip

/output/annot_stCuSTr-P_cds_all.zip

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

  • annot_stCuSTr-P_cds_all.zip

/output/annot_stCuSTr-P_cds_representatives.zip

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

  • annot_stCuSTr-P_cds_representatives.zip

/output/annot_stCuSTr-P_tr_all.zip

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

  • annot_stCuSTr-P_tr_all.zip

/output/annot_stCuSTr-P_tr_representatives.zip

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

  • annot_stCuSTr-P_tr_representatives.zip

/output/annot_stCuSTr-R_aa_all.zip

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

  • annot_stCuSTr-R_aa_all.zip

/output/annot_stCuSTr-R_aa_representatives.zip

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

  • annot_stCuSTr-R_aa_representatives.zip

/output/annot_stCuSTr-R_cds_all.zip

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

  • annot_stCuSTr-R_cds_all.zip

/output/annot_stCuSTr-R_cds_representatives.zip

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

  • annot_stCuSTr-R_cds_representatives.zip

/output/annot_stCuSTr-R_tr_all.zip

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

  • annot_stCuSTr-R_tr_all.zip

/output/annot_stCuSTr-R_tr_representatives.zip

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

  • annot_stCuSTr-R_tr_representatives.zip

/output/annot_stPanTr.aa.zip

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

  • annot_stPanTr.aa.zip

/output/annot_stPanTr.cds.zip

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

  • annot_stPanTr.cds.zip

/output/annot_stPanTr_rep.aa.zip

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

  • annot_stPanTr_rep.aa.zip

/output/annot_stPanTr_rep.cds.zip

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

  • annot_stPanTr_rep.cds.zip

/scripts/annotate.sh

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

  • annotate.sh

/_Assay_METADATA.TXT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

  • _Assay_METADATA.TXT

/input/README.MD

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

  • README.MD

/output/README.MD

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

  • README.MD

/README.MD

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

  • README.MD

/scripts/README.MD

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

  • README.MD

/reports/fasta_METADATA.xlsx

No description specified

  • fasta_METADATA.xlsx
Fingerprints

These checksums allow you to check a Snapshot you have downloaded hasn't been modified. For details on how to use these please visit this guide

MD5: 4523ed8df3d082a8a134e83edb9482df

SHA1: 4dc393ef19e9d50d7973e8ec4aa4fb635785b316

Citation
Blejec, A., & Zagorscak, M. (2020). _A_09_annotation-GFFmerged. FAIRDOMHub. http://doi.org/10.15490/FAIRDOMHUB.1.ASSAY.1268.2
Snapshots
Snapshot 2 (12th Apr 2020) DOI
Snapshot 1 (3rd Apr 2020) DOI
Activity

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Created: 12th Apr 2020 at 14:34

Last updated: 12th Apr 2020 at 14:34

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