Assays

3 Assays visible to you, out of a total of 3

Jupyter notebook Predicting Protein Numbers

Millar group

Jupyter lab notebook that contains the models and data that for predicting protein levels based on mRNA data from TiMet projecto

Submitter: Uriel Urquiza Garcia

Biological problem addressed: Model Analysis Type

Investigation: Absolute units for proteins in Arabidopsis cloc...

Study: Predicting absolute levels of clock proteins wi...

Organisms: No organisms

Models: U2019.4 antimony version, U2019.4 sbml version, U2019.5 antimony version, U2019.5 sbml version, U2020.4 antimony version, U2020.4 sbml version, U2020.5 antimony version, U2020.5 sbml version

SOPs: No SOPs

Data files: Simple model protein predictions from TiMet data, Timeseries protein data from literature

Snapshots: No snapshots

Created: 11th Aug 2022 at 11:59, Last updated: 19th Dec 2024 at 11:28

TiMet RNA timeseries data

Millar group

RNA timeseries data for Arabidopsis Col wild-type plants and clock mutants, as separate mean and SD files. The raw data is available on BioDare.ed.ac.uk, and is linked as 'Attribution' from elsewhere on FAIRDOMHub.

Submitter: Andrew Millar

Assay type: Q_PCR

Technology type: qRT-PCR

Investigation: Absolute units for proteins in Arabidopsis cloc...

Study: Predicting absolute levels of clock proteins wi...

Organisms: Arabidopsis thaliana : Col-0 wild type (wild-type / wild-type), Arabidopsis thaliana : prr7-3 prr9-1 (T-DNA insertion PRR9;T-DNA insertion PRR7 / 28h circadian rhythm), Arabidopsis thaliana, Arabidopsis thaliana

SOPs: No SOPs

Data files: Processed TiMet WP1.1a RNA data, SD, Processed TiMet WP1.1a RNA data, mean

Snapshots: No snapshots

Created: 18th Aug 2022 at 15:48, Last updated: 19th Dec 2024 at 11:28

Protein level time series

Millar group

Protein time series for clock proteins colected from the literature. Protein expression profiles were derived from images of western blot or or from plots that the orignal authors derived from quantitative western blots

Submitter: Uriel Urquiza Garcia

Assay type: Protein Expression Profiling

Technology type: Western Blot

Investigation: Absolute units for proteins in Arabidopsis cloc...

Study: Predicting absolute levels of clock proteins wi...

Organisms: No organisms

SOPs: No SOPs

Data files: Arabidopsis clock protein time series profiles ...

Snapshots: No snapshots

Created: 27th Aug 2022 at 07:04, Last updated: 19th Dec 2024 at 11:28

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