P.WAD-211204-V1_10.1016.j.celrep.2021.108864_RCN_parameters.txt

Version 1

pram.experimentType = 'h2ax_tissue'
pram.dataset = 'h2ax_tissue'

pram.Nx                  = 64;
pram.ValDataRatio        = 0.05; % ratio of training data used for validation

% hyper-parameter of the rule-based algorithm
pram.th_prop             = 0.99;
pram.th_gt               = 20000;% jenny's annotation are dark dots on bright bg on 16bit image

% training parameters 
pram.maxEpochs           = 20;
pram.miniBatchSize       = 256;
pram.initLearningRate    = 1;
pram.learningRateFactor  = .1;
pram.dropPeriod          = round(pram.maxEpochs/4);
pram.l2reg               = 0.0001;
pram.excEnv              = 'multi-gpu';   % 'gpu', 'multi-gpu'
pram.runTissueSeg = 0;