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1651 Data files visible to you, out of a total of 1747

scripts/rename_commands.txt

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1tr2combo/_A_01_renameFASTA-Bioinfo/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1tr2combo

Assays: _A_01_renameFASTA-Bioinfo

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Created: 16th May 2022 at 11:57, Last updated: 6th Nov 2024 at 15:26

scripts/CD-HIT-EST_commands.txt

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1tr2combo/_A_02_CDHIT-Bioinfo/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1tr2combo

Assays: _A_02_CDHIT-Bioinfo

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Created: 16th May 2022 at 11:57, Last updated: 6th Nov 2024 at 15:26

output/AllPcitriTranscripts.txt

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1tr2combo/_A_03_CDHIT2-Bioinfo/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1tr2combo

Assays: _A_03_CDHIT2-Bioinfo

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Created: 23rd Jan 2023 at 14:37, Last updated: 6th Nov 2024 at 15:26

_STUDY_METADATA.TXT

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1tr2combo/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1tr2combo

Assays: _S_P4_Pcitri_tr1tr2combo-files

Download

Created: 16th May 2022 at 10:28, Last updated: 6th Nov 2024 at 15:26

_ASSAY_METADATA.TXT

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1tr2combo/_A_01_renameFASTA-Bioinfo/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1tr2combo

Assays: _A_01_renameFASTA-Bioinfo

Download

Created: 16th May 2022 at 10:35, Last updated: 6th Nov 2024 at 15:26

output/PCA_PC1_top10genes.txt

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1/_A_09_As1_tr_limmaDE-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1

Assays: _A_09_As1_tr_limmaDE-R

Download

Created: 16th May 2022 at 11:51, Last updated: 6th Nov 2024 at 15:26

output/PCA_PC2_top10genes.txt

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1/_A_09_As1_tr_limmaDE-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1

Assays: _A_09_As1_tr_limmaDE-R

Download

Created: 16th May 2022 at 11:51, Last updated: 6th Nov 2024 at 15:26

output/Pcitri_tr1_counts_STAR_bothStr.txt

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1/_A_09_As1_tr_limmaDE-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1

Assays: _A_09_As1_tr_limmaDE-R

Download

Created: 16th May 2022 at 11:51, Last updated: 6th Nov 2024 at 15:26

_Assay_METADATA.TXT

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1/_A_09_As1_tr_limmaDE-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1

Assays: _A_09_As1_tr_limmaDE-R

Download

Created: 16th May 2022 at 10:35, Last updated: 6th Nov 2024 at 15:26

scripts/Pcitri_assembly1_STAR_commands.txt

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1/_A_08_mapReadsToAs1-STAR/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1

Assays: _A_08_mapReadsToAs1-STAR

Download

Created: 16th May 2022 at 11:50, Last updated: 6th Nov 2024 at 15:26

output/P_citri_alldata_RNAseq_logFC_padj_TMMcpm.txt

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1/_A_09_As1_tr_limmaDE-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1

Assays: _A_09_As1_tr_limmaDE-R

Download

Created: 16th May 2022 at 11:51, Last updated: 6th Nov 2024 at 15:26

output/P_citri_alldata_RNAseq_logFC_padj_TMMcpm.xlsx

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1/_A_09_As1_tr_limmaDE-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1

Assays: _A_09_As1_tr_limmaDE-R

Download

Created: 16th May 2022 at 11:51, Last updated: 6th Nov 2024 at 15:26

_Assay_METADATA.TXT

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1/_A_07_mapAs1ToGenome-STAR/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1

Assays: _A_07_mapAs1ToGenome-STAR

Download

Created: 16th May 2022 at 10:34, Last updated: 6th Nov 2024 at 15:26

_Assay_METADATA.TXT

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1/_A_08_mapReadsToAs1-STAR/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1

Assays: _A_08_mapReadsToAs1-STAR

Download

Created: 16th May 2022 at 10:35, Last updated: 6th Nov 2024 at 15:26

scripts/Pcitri_assembly1_IPS_commands.txt

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1/_A_06_assembly1-IPS/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1

Assays: _A_06_assembly1-IPS

Download

Created: 16th May 2022 at 11:48, Last updated: 6th Nov 2024 at 15:26

scripts/Pcitri_assembly1_STARlong_commands.txt

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1/_A_07_mapAs1ToGenome-STAR/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1

Assays: _A_07_mapAs1ToGenome-STAR

Download

Created: 16th May 2022 at 11:49, Last updated: 6th Nov 2024 at 15:26

output/IPS_softfiltered_all/soft_filtered_transcripts.pep.filtered.tsv

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1/_A_06_assembly1-IPS/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1

Assays: _A_06_assembly1-IPS

Download

Created: 16th May 2022 at 12:18, Last updated: 6th Nov 2024 at 15:26

_STUDY_METADATA.TXT

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1

Assays: _S_P4_Pcitri_tr1-files

Download

Created: 16th May 2022 at 10:27, Last updated: 6th Nov 2024 at 15:26

_Assay_METADATA.TXT

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1/_A_05_assembly1-rnaSPAdes/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1

Assays: _A_05_assembly1-rnaSPAdes

Download

Created: 16th May 2022 at 10:34, Last updated: 6th Nov 2024 at 15:26

_Assay_METADATA.TXT

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1/_A_06_assembly1-IPS/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1

Assays: _A_06_assembly1-IPS

Download

Created: 16th May 2022 at 10:34, Last updated: 6th Nov 2024 at 15:26

output/params.txt

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1/_A_05_assembly1-rnaSPAdes/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1

Assays: _A_05_assembly1-rnaSPAdes

Download

Created: 16th May 2022 at 11:48, Last updated: 6th Nov 2024 at 15:26

scripts/Pcitri_assembly1_spades_commands.txt

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1/_A_05_assembly1-rnaSPAdes/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1

Assays: _A_05_assembly1-rnaSPAdes

Download

Created: 16th May 2022 at 11:48, Last updated: 6th Nov 2024 at 15:26

_ASSAY_METADATA.TXT

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_IsoSeq/_A_04_mapIllumina-STAR/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_IsoSeq

Assays: _A_04_mapIllumina-STAR

Download

Created: 16th May 2022 at 10:34, Last updated: 6th Nov 2024 at 15:26

_ASSAY_METADATA.TXT

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_IsoSeq/_A_05_DE_limma-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_IsoSeq

Assays: _A_05_DE_limma-R

Download

Created: 16th May 2022 at 10:34, Last updated: 6th Nov 2024 at 15:26

scripts/Pcitri_map_Illumina_to_IsoSeq_commands.txt

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_IsoSeq/_A_04_mapIllumina-STAR/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_IsoSeq

Assays: _A_04_mapIllumina-STAR

Download

Created: 16th May 2022 at 11:47, Last updated: 6th Nov 2024 at 15:26

output/P_citri_IlluminaToIsoSeq_logFC_padj_TMMcpm.txt

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_IsoSeq/_A_05_DE_limma-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_IsoSeq

Assays: _A_05_DE_limma-R

Download

Created: 16th May 2022 at 11:47, Last updated: 6th Nov 2024 at 15:26

output/Pcitri_IlluminaMapToIsoSeq_counts_STAR_bothStr.txt

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_IsoSeq/_A_05_DE_limma-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_IsoSeq

Assays: _A_05_DE_limma-R

Download

Created: 16th May 2022 at 11:47, Last updated: 6th Nov 2024 at 15:26

reports/P_citri_IlluminaToIsoSeq_logFC_padj_TMMcpm.xlsx

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_IsoSeq/_A_05_DE_limma-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_IsoSeq

Assays: _A_05_DE_limma-R

Download

Created: 16th May 2022 at 11:47, Last updated: 6th Nov 2024 at 15:26

_ASSAY_METADATA.TXT

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_IsoSeq/_A_03-IPS/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_IsoSeq

Assays: _A_03-IPS

Download

Created: 16th May 2022 at 10:34, Last updated: 6th Nov 2024 at 15:26

output/Pcitri.ignored_ids.dumb.final.pep.rmstar.IPS.tsv

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_IsoSeq/_A_03-IPS/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_IsoSeq

Assays: _A_03-IPS

Download

Created: 16th May 2022 at 11:43, Last updated: 6th Nov 2024 at 15:26

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