Assays

What is an Assay?

6 Assays visible to you, out of a total of 6

The influence on functional enrichment analysis

The evolution of Gene Ontology

No description specified

Submitter: Yi Chen

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Exploring the Evolution of the Gene Ontology an...

Study: The influence of GO evolution on downstream ana...

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 8th Apr 2024 at 21:21, Last updated: 8th Apr 2024 at 21:24

GO evolution - Terms and Annotations

The evolution of Gene Ontology

No description specified

Submitter: Yi Chen

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Exploring the Evolution of the Gene Ontology an...

Study: Exploring how the concept and structure was inf...

Organisms: No organisms

SOPs: No SOPs

Data files: Reviewed and unreviewed proteins, Statistics of GO and GOA for 3 aspects from Jan..., Statistics of GO and GOA from Jan 2015 to Dec 2021, Top20 nodes with highest Degree Centrality score

Snapshots: No snapshots

Created: 8th Apr 2024 at 20:51, Last updated: 8th Apr 2024 at 21:11

FAIR Functional Enrichment

FAIR Functional Enrichment

No description specified

Submitter: Yi Chen

Biological problem addressed: Gene Expression

Investigation: FAIR Functional Enrichment: Assessing and Model...

Study: FAIR Functional Enrichment

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: Supplementary file 1: Search Terms, Supplementary file 2: Publications surveyed

Snapshots: No snapshots

Created: 28th Nov 2022 at 13:02, Last updated: 11th Feb 2023 at 23:25

Hub genes of modules and enriched GO terms

Consensus Hallmark Annotation

this assay include the hub genes of modules from different mapping schemes with highly functional similarities.

Submitter: Yi Chen

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Cancer Hallmark Consensus

Study: Prognostic and Hallmark Gene Networks

Organisms: No organisms

SOPs: No SOPs

Data files: Gene enrichment analysis output of modules, Modules and hub genes, Semantic similarity between pairwise modules

Snapshots: No snapshots

Created: 7th Feb 2021 at 21:00, Last updated: 8th Mar 2021 at 10:43

Jaccard Index Prognostic Hallmark Genes

Consensus Hallmark Annotation

A Jaccard Index of the overlap between prognostic and hallmark genes for 17 cancer types across different mapping schemes. The impact of selecting different mapping schemes was assessed by pairwise comparisons where there were 5 or more shared genes.

Submitter: Katy Wolstencroft

Biological problem addressed: Biological Network Analysis

Investigation: Cancer Hallmark Consensus

Study: Prognostic and Hallmark Gene Networks

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: Abbreviations of 17 cancer types, Jaccard index score, prognostic genes of 17 cancer types

Snapshots: No snapshots

Created: 22nd Jan 2021 at 16:13, Last updated: 5th Mar 2021 at 10:05

Annotation Consensus and GO Consensus

Consensus Hallmark Annotation

No description specified

Submitter: Katy Wolstencroft

Biological problem addressed: Annotation

Investigation: Cancer Hallmark Consensus

Study: Comparing Cancer Hallmark Descriptions

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: GO Consensus terms, Genes annotated to selected GO terms belonging ..., Hallmark genes, Mapping from Gene Ontology terms to individual ..., Mapping from MSigDB pathways to GO terms, Mapping from pathways to individual cancer hall..., The number of genes annotated to individual can...

Snapshots: No snapshots

Created: 22nd Jan 2021 at 16:07, Last updated: 9th Feb 2021 at 09:19

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