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2 Assays visible to you, out of a total of 2

Differential gene expression and pathway enrichment using Deseq2

OMICS of vascular smooth muscle cells under oxidative stress

No description specified

Submitter: Ayat Ismail

Biological problem addressed: Model Analysis Type

Investigation: ONT direct RNA Sequencing

Study: Differential transcript expression analysis

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: All figures in PDF form, C3 vs Others – DESeq2 reproducible conda workflow, DESeq2 condition based analysis, DESeq2_DE_Transcript_Lists.csv, DiffExp and pathway enrichment report.pdf, Input files

Snapshots: No snapshots

Created: 12th Feb 2025 at 11:37, Last updated: 19th Dec 2025 at 13:01

Comprehensive RNA Modification Analysis and Visualization

OMICS of vascular smooth muscle cells under oxidative stress

Majority direction kmer data files were used for the analysis. e.g: results/analysed_icg/xpore_cdna.all/diffmod_s1-s2/majority_direction_kmer_diffmod.table. which has been renamed to : s1_s2.table as uploaded here.

Submitter: Ayat Ismail

Biological problem addressed: Model Analysis Type

Investigation: ONT direct RNA Sequencing

Study: RNA modification detection

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: Exploring RNA Modifications with xPore: Visual ..., Filtered xPore RNA Modification Data and Summar..., vsmc-omics-postprocessing_quarto-renv-inputdata, xPore Input Data Tables, xPore Postprocessing Visualization Code (Quarto), xPore RNA Modification Analysis: Visualization ...

Snapshots: No snapshots

Created: 12th Feb 2025 at 11:34, Last updated: 19th Dec 2025 at 13:01

(v.1.17.2)

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