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| Datafile metadata | How to use this sheet Details on how to use this sheet and what the cells mean can be found by visiting: | ||||||||
| Data File Title: | samples-publish_PF-IVM_A.IMG.xlsx | ||||||||
| Data File Description: | Batch sample publishing | ||||||||
| Project SEEK ID: | https://fairdomhub.org/projects/340 | ||||||||
| Master metadata sheet guide | |||||||||
| Associated Assay | |||||||||
| Existing Assay SEEK ID: | https://fairdomhub.org/assays/2649 | ||||||||
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| New Assay metadata | |||||||||
| Study SEEK ID: | |||||||||
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| Assay Description: | |||||||||
| Assay type: | Experimental_assay_type | Powered by: | |||||||
| Technology type: | Technology_type | ||||||||
| SOP SEEK ID: | |||||||||
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| UID | File_PrimaryData | Link_PrimaryData | DataType | Scientist | Protocol | SourceCode | Parent | Description | Algorithm | Software |
| A.IMG-250515FRI-1 | MovieS1_IntravitalMicroscopy | https://www.pnas.org/doi/suppl/10.1073/pnas.2414009121/suppl_file/pnas.2414009121.sm01.avi | avi | Peter Friedl | https://fairdomhub.org/sops/831 | https://github.com/joshichaitanya3/actnempy | D.IMG-250515FRI-1 | Time-lapse of collectively invading HT1080 cells in the mouse dermis (position P1). Colors are: cytoplasm in green, nuclei in blue and collagen in magenta. | 3D Horn–Schunck Optical Flow | ImageJ with OrientationJ Plugin |
| A.IMG-250515FRI-2 | MovieS2_IntravitalMicroscopy | https://www.pnas.org/doi/suppl/10.1073/pnas.2414009121/suppl_file/pnas.2414009121.sm02.avi | avi | Peter Friedl | https://fairdomhub.org/sops/831 | https://github.com/joshichaitanya3/actnempy | D.IMG-250515FRI-1 | Time-lapse of collectively invading HT1080 cells in the mouse dermis (position P2). Colors are: cytoplasm in green, nuclei in blue and collagen in magenta. | 3D Horn–Schunck Optical Flow | ImageJ with OrientationJ Plugin |
| A.IMG-250515FRI-3 | MovieS3_IntravitalMicroscopy | https://www.pnas.org/doi/suppl/10.1073/pnas.2414009121/suppl_file/pnas.2414009121.sm03.avi | avi | Peter Friedl | https://fairdomhub.org/sops/831 | https://github.com/joshichaitanya3/actnempy | D.IMG-250515FRI-1 | Time-lapse of collectively invading HT1080 cells in the mouse dermis (position P3). Colors are: cytoplasm in green, nuclei in blue and collagen in magenta. | 3D Horn–Schunck Optical Flow | ImageJ with OrientationJ Plugin |
| A.IMG-250515FRI-4 | MovieS4_IntravitalMicroscopy | https://www.pnas.org/doi/suppl/10.1073/pnas.2414009121/suppl_file/pnas.2414009121.sm04.avi | avi | Peter Friedl | https://fairdomhub.org/sops/831 | https://github.com/joshichaitanya3/actnempy | D.IMG-250515FRI-1 | Time-lapse of collectively invading HT1080 cells in the mouse dermis (position P4). Colors are: cytoplasm in green, nuclei in blue and collagen in magenta. | 3D Horn–Schunck Optical Flow | ImageJ with OrientationJ Plugin |
| A.IMG-250515FRI-5 | MovieS5_IntravitalMicroscopy | https://www.pnas.org/doi/suppl/10.1073/pnas.2414009121/suppl_file/pnas.2414009121.sm05.mov | mov | Peter Friedl | https://fairdomhub.org/sops/831 | https://github.com/joshichaitanya3/actnempy | D.IMG-250515FRI-1 | Time-lapse of stream lines and topological defects obtained from position P4 as illustrated in Fig. 4a. | 3D Horn–Schunck Optical Flow | ImageJ with OrientationJ Plugin |
