ID Title UID File_PrimaryData Link_PrimaryData Scientist Protocol Type Description AdditionalData AdditionalData_Link
ID Title UID File_PrimaryData Link_PrimaryData Scientist Protocol Type Description AdditionalData AdditionalData_Link
68342 MDL-250424BAC-1 MDL-250424BAC-1 Figure 2.zip https://datadryad.org/downloads/file_stream/3783747 Vadim Backman https://fairdomhub.org/sops/829 AlphaFold Modeling AlphaFold PDB directory has structural models of chromatin enzymes obtained from alphafold. Calculate Rg Enzymes.py is a python script that generates Enzyme sites.xlsx, and SR-EV Domain Penetration Results.nb models enzyme penetration into chromatin domains as a function of size (Rg) using a physical simulation (SR-EV = Stochastic Returning Excluded Volume model) Movie S4: In silico polymer-based chromatin model showing compaction (CN 0–12) https://www.science.org/doi/suppl/10.1126/sciadv.adq6652/suppl_file/sciadv.adq6652_movies_s1_to_s4.zip
68343 MDL-250424BAC-2 MDL-250424BAC-2 Figure 3.zip https://datadryad.org/downloads/file_stream/3783745 Vadim Backman https://fairdomhub.org/sops/829 Domain Loop Modeling Version1.5_ps0.1 Contains simulation outputs modeling the evolution of chromatin packing domains over time (3hr, 8hr, 100hr), which is then associated with PM_Figures_Vfinal.ipynb, a jupyter notebook that connects to the phenomelogical loop domain formation model Not specified Not specified
Powered by
(v.1.16.2)
Copyright © 2008 - 2024 The University of Manchester and HITS gGmbH