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| Datafile metadata | How to use this sheet Details on how to use this sheet and what the cells mean can be found by visiting: | ||||||||
| Data File Title: | samples-publish_VB-CC_D.IMG.xlsx | ||||||||
| Data File Description: | Batch sample publishing | ||||||||
| Project SEEK ID: | https://fairdomhub.org/projects/340 | ||||||||
| Master metadata sheet guide | |||||||||
| Associated Assay | |||||||||
| Existing Assay SEEK ID: | https://fairdomhub.org/assays/2636 | ||||||||
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| New Assay metadata | |||||||||
| Study SEEK ID: | |||||||||
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| Assay Description: | |||||||||
| Assay type: | Experimental_assay_type | Powered by: | |||||||
| Technology type: | Technology_type | ||||||||
| SOP SEEK ID: | |||||||||
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| UID | File_PrimaryData | Link_PrimaryData | Path_PrimaryData | Repository | RepositoryID | Scientist | Protocol | Parent | Instrument | Type | Targets | InstrumentType | ScanMode | Software |
| D.IMG-250422BAC-1 | A549.tif | https://datadryad.org/downloads/file_stream/3783746 | Figure_1.zip | Dryad | https://doi.org/10.5061/dryad.b8gtht7p0 | Vadim Backman | https://fairdomhub.org/sops/825 | CEL-250422BAC-5 | Hitachi 2300 STEM | Chromatin Electron Microscopy | Scanning Transmission Electron Microscope (STEM) | High-angle annular dark-field (HAADF) | IMOD software and TomoPy penalized maximum likelihood algorithm | |
| D.IMG-250422BAC-2 | BJ.tif | https://datadryad.org/downloads/file_stream/3783746 | Figure_1.zip | Dryad | https://doi.org/10.5061/dryad.b8gtht7p0 | Vadim Backman | https://fairdomhub.org/sops/825 | CEL-250422BAC-4 | Hitachi 2300 STEM | Chromatin Electron Microscopy | Scanning Transmission Electron Microscope (STEM) | High-angle annular dark-field (HAADF) | IMOD software and TomoPy penalized maximum likelihood algorithm | |
| D.IMG-250422BAC-3 | HCT116.tif | https://datadryad.org/downloads/file_stream/3783746 | Figure_1.zip | Dryad | https://doi.org/10.5061/dryad.b8gtht7p0 | Vadim Backman | https://fairdomhub.org/sops/825 | CEL-250422BAC-1 | Hitachi 2300 STEM | Chromatin Electron Microscopy | Scanning Transmission Electron Microscope (STEM) | High-angle annular dark-field (HAADF) | IMOD software and TomoPy penalized maximum likelihood algorithm | |
| D.IMG-250422BAC-4 | A549 packing domain.jpg | https://datadryad.org/downloads/file_stream/3783746 | Figure_1.zip | Dryad | https://doi.org/10.5061/dryad.b8gtht7p0 | Vadim Backman | https://fairdomhub.org/sops/825 | CEL-250422BAC-5 | Hitachi 2300 STEM | Chromatin Electron Microscopy | Scanning Transmission Electron Microscope (STEM) | High-angle annular dark-field (HAADF) | IMOD software and TomoPy penalized maximum likelihood algorithm | |
| D.IMG-250422BAC-5 | control rad21.nuc.tif | https://datadryad.org/downloads/file_stream/3783748 | Figure_4.zip/PWS Data/RAD21 | Dryad | https://doi.org/10.5061/dryad.b8gtht7p0 | Vadim Backman | https://fairdomhub.org/sops/826 | CEL-250422BAC-1 | Hamamatsu C9100-13 EMCCD | Partial Wave Spectroscopic (PWS) Microscopy (Live-cell) | Leica DM IRB inverted microscope | Liquid Crystal Tunable Filter (LCTF, Cambridge Research & Instrumentation) | ||
| D.IMG-250422BAC-6 | rad21 depleted.tif | https://datadryad.org/downloads/file_stream/3783748 | Figure_4.zip/PWS Data/RAD21 | Dryad | https://doi.org/10.5061/dryad.b8gtht7p0 | Vadim Backman | https://fairdomhub.org/sops/826 | CEL-250422BAC-6 | Hamamatsu C9100-13 EMCCD | Partial Wave Spectroscopic (PWS) Microscopy (Live-cell) | Leica DM IRB inverted microscope | Liquid Crystal Tunable Filter (LCTF, Cambridge Research & Instrumentation) | ||
| D.IMG-250422BAC-7 | ActD Control.tif | https://datadryad.org/downloads/file_stream/3783748 | Figure_4.zip/PWS Data/ActD | Dryad | https://doi.org/10.5061/dryad.b8gtht7p0 | Vadim Backman | https://fairdomhub.org/sops/826 | CEL-250422BAC-1 | Hamamatsu C9100-13 EMCCD | Partial Wave Spectroscopic (PWS) Microscopy (Live-cell) | Leica DM IRB inverted microscope | Liquid Crystal Tunable Filter (LCTF, Cambridge Research & Instrumentation) | ||
| D.IMG-250422BAC-8 | ActD treated.tif | https://datadryad.org/downloads/file_stream/3783748 | Figure_4.zip/PWS Data/ActD | Dryad | https://doi.org/10.5061/dryad.b8gtht7p0 | Vadim Backman | https://fairdomhub.org/sops/826 | CEL-250422BAC-8 | Hamamatsu C9100-13 EMCCD | Partial Wave Spectroscopic (PWS) Microscopy (Live-cell) | Leica DM IRB inverted microscope | Liquid Crystal Tunable Filter (LCTF, Cambridge Research & Instrumentation) | ||
| D.IMG-250422BAC-9 | actD_treated.jpg | https://datadryad.org/downloads/file_stream/3783748 | Figure_4.zip/ActD | Dryad | https://doi.org/10.5061/dryad.b8gtht7p0 | Vadim Backman | https://fairdomhub.org/sops/825 | CEL-250422BAC-7 | Hitachi 2300 STEM | Chromatin Electron Microscopy | Scanning Transmission Electron Microscope (STEM) | High-angle annular dark-field (HAADF) | ||
| D.IMG-250422BAC-10 | rad21_depleted.tif | https://datadryad.org/downloads/file_stream/3783748 | Figure_4.zip/Rad21 | Dryad | https://doi.org/10.5061/dryad.b8gtht7p0 | Vadim Backman | https://fairdomhub.org/sops/825 | CEL-250422BAC-6 | Hitachi 2300 STEM | Chromatin Electron Microscopy | Scanning Transmission Electron Microscope (STEM) | High-angle annular dark-field (HAADF) | ||
| D.IMG-250422BAC-11 | SMLM_HeLa_DSMO | https://datadryad.org/downloads/file_stream/3783751 | Figure_5.zip/Figure 5/Figure 5 SMLM/dmso | Dryad | https://doi.org/10.5061/dryad.b8gtht7p0 | Vadim Backman | https://fairdomhub.org/sops/827 | CEL-250422BAC-3 | Single-molecule localization microscopy (SMLM) | H3K9me3, H3K27ac, RNA Polymerase II, H3K27me3 | Single-Molecule Localization Microscopy (SMLM) | ThunderSTORM plugin for ImageJ / FIJI | ||
| D.IMG-250422BAC-12 | SMLM_HeLa_ActD | https://datadryad.org/downloads/file_stream/3783751 | Figure_5.zip/Figure 5/Figure 5 SMLM/act-d | Dryad | https://doi.org/10.5061/dryad.b8gtht7p0 | Vadim Backman | https://fairdomhub.org/sops/827 | CEL-250422BAC-12 | Single-molecule localization microscopy (SMLM) | H3K9me3, H3K27ac, RNA Polymerase II, H3K27me3 | Single-Molecule Localization Microscopy (SMLM) | ThunderSTORM plugin for ImageJ / FIJI | ||
| D.IMG-250422BAC-13 | SMLM_HeLa_GSK | https://datadryad.org/downloads/file_stream/3783751 | Figure_5.zip/Figure 5/Figure 5 SMLM/gsk | Dryad | https://doi.org/10.5061/dryad.b8gtht7p0 | Vadim Backman | https://fairdomhub.org/sops/827 | CEL-250422BAC-13 | Single-molecule localization microscopy (SMLM) | H3K9me3, H3K27ac, RNA Polymerase II, H3K27me3 | Single-Molecule Localization Microscopy (SMLM) | ThunderSTORM plugin for ImageJ / FIJI | ||
| D.IMG-250422BAC-14 | SMLM_HeLa_TSA | https://datadryad.org/downloads/file_stream/3783751 | Figure_5.zip/Figure 5/Figure 5 SMLM/tsa | Dryad | https://doi.org/10.5061/dryad.b8gtht7p0 | Vadim Backman | https://fairdomhub.org/sops/827 | CEL-250422BAC-14 | Single-molecule localization microscopy (SMLM) | H3K9me3, H3K27ac, RNA Polymerase II, H3K27me3 | Single-Molecule Localization Microscopy (SMLM) | ThunderSTORM plugin for ImageJ / FIJI | ||
| D.IMG-250422BAC-15 | PWS bapta control.tif | https://datadryad.org/downloads/file_stream/3783750 | Figure 6.zip | Dryad | https://doi.org/10.5061/dryad.b8gtht7p0 | Vadim Backman | https://fairdomhub.org/sops/826 | CEL-250422BAC-1 | Hamamatsu C9100-13 EMCCD | Partial Wave Spectroscopic (PWS) Microscopy (Live-cell) | Leica DM IRB inverted microscope | Liquid Crystal Tunable Filter (LCTF, Cambridge Research & Instrumentation) | ||
| D.IMG-250422BAC-16 | PWS bapta treated.tif | https://datadryad.org/downloads/file_stream/3783750 | Figure 6.zip | Dryad | https://doi.org/10.5061/dryad.b8gtht7p0 | Vadim Backman | https://fairdomhub.org/sops/826 | CEL-250422BAC-11 | Hamamatsu C9100-13 EMCCD | Partial Wave Spectroscopic (PWS) Microscopy (Live-cell) | Leica DM IRB inverted microscope | Liquid Crystal Tunable Filter (LCTF, Cambridge Research & Instrumentation) | ||
| D.IMG-250422BAC-17 | HCT116_CTRL_Comp_50laser_30expt_cell2_ThunderStorm_thre2.tif | https://datadryad.org/downloads/file_stream/3783750 | Figure 6.zip | Dryad | https://doi.org/10.5061/dryad.b8gtht7p0 | Vadim Backman | https://fairdomhub.org/sops/827 | CEL-250422BAC-1 | Single-molecule localization microscopy (SMLM) | H3K9me3, H3K27ac, RNA Polymerase II, H3K27me3 | Single-Molecule Localization Microscopy (SMLM) | |||
| D.IMG-250422BAC-18 | HCT116_BAPTA_Comp_50laser_30expt_cell4_ThunderSTORM_thre2.tif | https://datadryad.org/downloads/file_stream/3783750 | Figure 6.zip | Dryad | https://doi.org/10.5061/dryad.b8gtht7p0 | Vadim Backman | https://fairdomhub.org/sops/827 | CEL-250422BAC-11 | Single-molecule localization microscopy (SMLM) | H3K9me3, H3K27ac, RNA Polymerase II, H3K27me3 | Single-Molecule Localization Microscopy (SMLM) | |||
| D.IMG-250422BAC-19 | SMLM_HCT_DMSO | https://datadryad.org/downloads/file_stream/3783752 | Figure 7.zip/SMLM/dmso_EU_k9 | Dryad | https://doi.org/10.5061/dryad.b8gtht7p0 | Vadim Backman | https://fairdomhub.org/sops/827 | CEL-250422BAC-1 | Single-molecule localization microscopy (SMLM) | EU, K9, Lamin, Nucleolus | Single-Molecule Localization Microscopy (SMLM) | ThunderSTORM plugin for ImageJ / FIJI | ||
| D.IMG-250422BAC-20 | SMLM_HCT_GSK | https://datadryad.org/downloads/file_stream/3783752 | Figure 7.zip/SMLM/gsk_EU_k9 | Dryad | https://doi.org/10.5061/dryad.b8gtht7p0 | Vadim Backman | https://fairdomhub.org/sops/827 | CEL-250422BAC-9 | Single-molecule localization microscopy (SMLM) | EU, K9, Lamin, Nucleolus | Single-Molecule Localization Microscopy (SMLM) | ThunderSTORM plugin for ImageJ / FIJI | ||
| D.IMG-250422BAC-21 | SMLM_HCT_TSA | https://datadryad.org/downloads/file_stream/3783752 | Figure 7.zip/SMLM/tsa_EU_k9 | Dryad | https://doi.org/10.5061/dryad.b8gtht7p0 | Vadim Backman | https://fairdomhub.org/sops/827 | CEL-250422BAC-10 | Single-molecule localization microscopy (SMLM) | EU, K9, Lamin, Nucleolus | Single-Molecule Localization Microscopy (SMLM) | ThunderSTORM plugin for ImageJ / FIJI | ||
