Copasi version of model, PLM_78_ 1 Version 1
Data file for PLaSMo accesssion ID PLM_78, version 1
SEEK ID: https://fairdomhub.org/data_files/2466?version=1
Filename:
131wt_12_model_2.cps
Format: XML document
Size: 254 KB
<?xml version="1.0" encoding="UTF-8"?>
<!-- generated with COPASI 4.8 (Build 35) (http://www.copasi.org) at 2013-10-10 21:08:22 UTC -->
<?oxygen RNGSchema="http://www.copasi.org/static/schema/CopasiML.rng" type="xml"?>
<COPASI xmlns="http://www.copasi.org/static/schema" versionMajor="1" versionMinor="0" versionDevel="35">
<ListOfFunctions>
<Function key="Function_43" name="function_4_cL_m_degr_1" type="UserDefined" reversible="false">
<Expression>
(m1*L+m2*D)*cL_m/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_266" name="D" order="0" role="constant"/>
<ParameterDescription key="FunctionParameter_254" name="L" order="1" role="constant"/>
<ParameterDescription key="FunctionParameter_268" name="cL_m" order="2" role="substrate"/>
<ParameterDescription key="FunctionParameter_270" name="def" order="3" role="volume"/>
<ParameterDescription key="FunctionParameter_264" name="m1" order="4" role="constant"/>
<ParameterDescription key="FunctionParameter_258" name="m2" order="5" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_44" name="function_4_cL_trsl_1" type="UserDefined" reversible="false">
<Expression>
cL_m*(p1*L+p2)/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_246" name="L" order="0" role="constant"/>
<ParameterDescription key="FunctionParameter_271" name="cL_m" order="1" role="modifier"/>
<ParameterDescription key="FunctionParameter_274" name="def" order="2" role="volume"/>
<ParameterDescription key="FunctionParameter_267" name="p1" order="3" role="constant"/>
<ParameterDescription key="FunctionParameter_272" name="p2" order="4" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_45" name="function_4_cL_degr_1" type="UserDefined" reversible="false">
<Expression>
(m3*cL+p3*cL^c/(cL^c+g3^c))/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_277" name="c" order="0" role="constant"/>
<ParameterDescription key="FunctionParameter_262" name="cL" order="1" role="substrate"/>
<ParameterDescription key="FunctionParameter_281" name="def" order="2" role="volume"/>
<ParameterDescription key="FunctionParameter_279" name="g3" order="3" role="constant"/>
<ParameterDescription key="FunctionParameter_275" name="m3" order="4" role="constant"/>
<ParameterDescription key="FunctionParameter_269" name="p3" order="5" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_46" name="function_4_cL_modif_1" type="UserDefined" reversible="false">
<Expression>
p3*cL^c/(cL^c+g3^c)/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_265" name="c" order="0" role="constant"/>
<ParameterDescription key="FunctionParameter_278" name="cL" order="1" role="modifier"/>
<ParameterDescription key="FunctionParameter_285" name="def" order="2" role="volume"/>
<ParameterDescription key="FunctionParameter_283" name="g3" order="3" role="constant"/>
<ParameterDescription key="FunctionParameter_282" name="p3" order="4" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_47" name="function_4_cLm_degr_1" type="UserDefined" reversible="false">
<Expression>
m4*cLm/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_273" name="cLm" order="0" role="substrate"/>
<ParameterDescription key="FunctionParameter_280" name="def" order="1" role="volume"/>
<ParameterDescription key="FunctionParameter_286" name="m4" order="2" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_48" name="function_4_cP_trsl_1" type="UserDefined" reversible="false">
<Expression>
p7*D*(1-cP)/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_284" name="D" order="0" role="constant"/>
<ParameterDescription key="FunctionParameter_289" name="cP" order="1" role="product"/>
<ParameterDescription key="FunctionParameter_291" name="def" order="2" role="volume"/>
<ParameterDescription key="FunctionParameter_287" name="p7" order="3" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_49" name="function_4_cP_degr_1" type="UserDefined" reversible="false">
<Expression>
m11*cP*L/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_293" name="L" order="0" role="constant"/>
<ParameterDescription key="FunctionParameter_288" name="cP" order="1" role="substrate"/>
<ParameterDescription key="FunctionParameter_295" name="def" order="2" role="volume"/>
<ParameterDescription key="FunctionParameter_292" name="m11" order="3" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_50" name="function_4_cP9_m_trscr" type="UserDefined" reversible="false">
<Expression>
(L*q3*cP+(n4+n7*cL^e/(cL^e+g9^e))*g8/(cEC+g8))/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_296" name="L" order="0" role="constant"/>
<ParameterDescription key="FunctionParameter_311" name="cEC" order="1" role="modifier"/>
<ParameterDescription key="FunctionParameter_303" name="cL" order="2" role="modifier"/>
<ParameterDescription key="FunctionParameter_297" name="cP" order="3" role="modifier"/>
<ParameterDescription key="FunctionParameter_313" name="def" order="4" role="volume"/>
<ParameterDescription key="FunctionParameter_305" name="e" order="5" role="constant"/>
<ParameterDescription key="FunctionParameter_309" name="g8" order="6" role="constant"/>
<ParameterDescription key="FunctionParameter_307" name="g9" order="7" role="constant"/>
<ParameterDescription key="FunctionParameter_299" name="n4" order="8" role="constant"/>
<ParameterDescription key="FunctionParameter_301" name="n7" order="9" role="constant"/>
<ParameterDescription key="FunctionParameter_276" name="q3" order="10" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_51" name="function_4_cP9_m_degr_1" type="UserDefined" reversible="false">
<Expression>
m12*cP9_m/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_310" name="cP9_m" order="0" role="substrate"/>
<ParameterDescription key="FunctionParameter_306" name="def" order="1" role="volume"/>
<ParameterDescription key="FunctionParameter_314" name="m12" order="2" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_52" name="function_4_cP9_trsl_1" type="UserDefined" reversible="false">
<Expression>
p8*cP9_m/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_312" name="cP9_m" order="0" role="modifier"/>
<ParameterDescription key="FunctionParameter_300" name="def" order="1" role="volume"/>
<ParameterDescription key="FunctionParameter_304" name="p8" order="2" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_53" name="function_4_cP9_degr_1" type="UserDefined" reversible="false">
<Expression>
(m13+m22*D)*cP9/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_294" name="D" order="0" role="constant"/>
<ParameterDescription key="FunctionParameter_316" name="cP9" order="1" role="substrate"/>
<ParameterDescription key="FunctionParameter_318" name="def" order="2" role="volume"/>
<ParameterDescription key="FunctionParameter_298" name="m13" order="3" role="constant"/>
<ParameterDescription key="FunctionParameter_308" name="m22" order="4" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_54" name="function_4_cP7_m_trscr_1" type="UserDefined" reversible="false">
<Expression>
(n8*(cLm+cL)^e/((cLm+cL)^e+g10^e)+n9*cP9^f/(cP9^f+g11^f))/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_302" name="cL" order="0" role="modifier"/>
<ParameterDescription key="FunctionParameter_315" name="cLm" order="1" role="modifier"/>
<ParameterDescription key="FunctionParameter_327" name="cP9" order="2" role="modifier"/>
<ParameterDescription key="FunctionParameter_333" name="def" order="3" role="volume"/>
<ParameterDescription key="FunctionParameter_321" name="e" order="4" role="constant"/>
<ParameterDescription key="FunctionParameter_329" name="f" order="5" role="constant"/>
<ParameterDescription key="FunctionParameter_323" name="g10" order="6" role="constant"/>
<ParameterDescription key="FunctionParameter_331" name="g11" order="7" role="constant"/>
<ParameterDescription key="FunctionParameter_319" name="n8" order="8" role="constant"/>
<ParameterDescription key="FunctionParameter_325" name="n9" order="9" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_55" name="function_4_cP7_m_degr_1" type="UserDefined" reversible="false">
<Expression>
m14*cP7_m/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_330" name="cP7_m" order="0" role="substrate"/>
<ParameterDescription key="FunctionParameter_326" name="def" order="1" role="volume"/>
<ParameterDescription key="FunctionParameter_334" name="m14" order="2" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_56" name="function_4_cP7_trsl_1" type="UserDefined" reversible="false">
<Expression>
p9*cP7_m/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_332" name="cP7_m" order="0" role="modifier"/>
<ParameterDescription key="FunctionParameter_320" name="def" order="1" role="volume"/>
<ParameterDescription key="FunctionParameter_324" name="p9" order="2" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_57" name="function_4_cP7_degr_1" type="UserDefined" reversible="false">
<Expression>
(m15+m23*D)*cP7/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_335" name="D" order="0" role="constant"/>
<ParameterDescription key="FunctionParameter_337" name="cP7" order="1" role="substrate"/>
<ParameterDescription key="FunctionParameter_339" name="def" order="2" role="volume"/>
<ParameterDescription key="FunctionParameter_290" name="m15" order="3" role="constant"/>
<ParameterDescription key="FunctionParameter_328" name="m23" order="4" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_58" name="function_4_cNI_m_trscr_1" type="UserDefined" reversible="false">
<Expression>
(n10*cLm^e/(cLm^e+g12^e)+n11*cP7^b/(cP7^b+g13^b))/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_348" name="b" order="0" role="constant"/>
<ParameterDescription key="FunctionParameter_336" name="cLm" order="1" role="modifier"/>
<ParameterDescription key="FunctionParameter_346" name="cP7" order="2" role="modifier"/>
<ParameterDescription key="FunctionParameter_352" name="def" order="3" role="volume"/>
<ParameterDescription key="FunctionParameter_322" name="e" order="4" role="constant"/>
<ParameterDescription key="FunctionParameter_342" name="g12" order="5" role="constant"/>
<ParameterDescription key="FunctionParameter_350" name="g13" order="6" role="constant"/>
<ParameterDescription key="FunctionParameter_340" name="n10" order="7" role="constant"/>
<ParameterDescription key="FunctionParameter_344" name="n11" order="8" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_59" name="function_4_cNI_m_degr_1" type="UserDefined" reversible="false">
<Expression>
m16*cNI_m/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_349" name="cNI_m" order="0" role="substrate"/>
<ParameterDescription key="FunctionParameter_345" name="def" order="1" role="volume"/>
<ParameterDescription key="FunctionParameter_353" name="m16" order="2" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_60" name="function_4_cNI_trsl_1" type="UserDefined" reversible="false">
<Expression>
p10*cNI_m/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_351" name="cNI_m" order="0" role="modifier"/>
<ParameterDescription key="FunctionParameter_317" name="def" order="1" role="volume"/>
<ParameterDescription key="FunctionParameter_343" name="p10" order="2" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_61" name="function_4_cNI_degr_1" type="UserDefined" reversible="false">
<Expression>
(m17+m24*D)*cNI/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_355" name="D" order="0" role="constant"/>
<ParameterDescription key="FunctionParameter_357" name="cNI" order="1" role="substrate"/>
<ParameterDescription key="FunctionParameter_359" name="def" order="2" role="volume"/>
<ParameterDescription key="FunctionParameter_338" name="m17" order="3" role="constant"/>
<ParameterDescription key="FunctionParameter_347" name="m24" order="4" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_62" name="function_4_cT_m_trscr" type="UserDefined" reversible="false">
<Expression>
n2*g4/(cEC+g4)*g5^e/(cL^e+g5^e)/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_341" name="cEC" order="0" role="modifier"/>
<ParameterDescription key="FunctionParameter_366" name="cL" order="1" role="modifier"/>
<ParameterDescription key="FunctionParameter_368" name="def" order="2" role="volume"/>
<ParameterDescription key="FunctionParameter_364" name="e" order="3" role="constant"/>
<ParameterDescription key="FunctionParameter_356" name="g4" order="4" role="constant"/>
<ParameterDescription key="FunctionParameter_362" name="g5" order="5" role="constant"/>
<ParameterDescription key="FunctionParameter_360" name="n2" order="6" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_63" name="function_4_cT_m_degr_1" type="UserDefined" reversible="false">
<Expression>
m5*cT_m/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_365" name="cT_m" order="0" role="substrate"/>
<ParameterDescription key="FunctionParameter_361" name="def" order="1" role="volume"/>
<ParameterDescription key="FunctionParameter_369" name="m5" order="2" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_64" name="function_4_cT_trsl_1" type="UserDefined" reversible="false">
<Expression>
p4*cT_m/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_367" name="cT_m" order="0" role="modifier"/>
<ParameterDescription key="FunctionParameter_370" name="def" order="1" role="volume"/>
<ParameterDescription key="FunctionParameter_354" name="p4" order="2" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_65" name="function_4_cT_degr_1" type="UserDefined" reversible="false">
<Expression>
((m6+m7*D)*cT*(p5*cZTL+cZG)+m8*cT)/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_373" name="D" order="0" role="constant"/>
<ParameterDescription key="FunctionParameter_375" name="cT" order="1" role="substrate"/>
<ParameterDescription key="FunctionParameter_381" name="cZG" order="2" role="modifier"/>
<ParameterDescription key="FunctionParameter_379" name="cZTL" order="3" role="modifier"/>
<ParameterDescription key="FunctionParameter_385" name="def" order="4" role="volume"/>
<ParameterDescription key="FunctionParameter_371" name="m6" order="5" role="constant"/>
<ParameterDescription key="FunctionParameter_363" name="m7" order="6" role="constant"/>
<ParameterDescription key="FunctionParameter_383" name="m8" order="7" role="constant"/>
<ParameterDescription key="FunctionParameter_377" name="p5" order="8" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_66" name="function_4_cE4_m_trscr_1" type="UserDefined" reversible="false">
<Expression>
n13*g2/(cEC+g2)*g6^e/(cL^e+g6^e)/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_378" name="cEC" order="0" role="modifier"/>
<ParameterDescription key="FunctionParameter_388" name="cL" order="1" role="modifier"/>
<ParameterDescription key="FunctionParameter_390" name="def" order="2" role="volume"/>
<ParameterDescription key="FunctionParameter_358" name="e" order="3" role="constant"/>
<ParameterDescription key="FunctionParameter_382" name="g2" order="4" role="constant"/>
<ParameterDescription key="FunctionParameter_374" name="g6" order="5" role="constant"/>
<ParameterDescription key="FunctionParameter_386" name="n13" order="6" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_67" name="function_4_cE4_m_degr_1" type="UserDefined" reversible="false">
<Expression>
m34*cE4_m/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_387" name="cE4_m" order="0" role="substrate"/>
<ParameterDescription key="FunctionParameter_376" name="def" order="1" role="volume"/>
<ParameterDescription key="FunctionParameter_391" name="m34" order="2" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_68" name="function_4_cE4_trsl_1" type="UserDefined" reversible="false">
<Expression>
p23*cE4_m/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_389" name="cE4_m" order="0" role="modifier"/>
<ParameterDescription key="FunctionParameter_392" name="def" order="1" role="volume"/>
<ParameterDescription key="FunctionParameter_380" name="p23" order="2" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_69" name="function_4_cE4_degr_1" type="UserDefined" reversible="false">
<Expression>
(m35*cE4+p25*cE4*cE3n-p21*p25*cE4*cE3n/(p26*cLUX+p21+m37*cCOP1d+m36*cCOP1n))/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_407" name="cCOP1d" order="0" role="modifier"/>
<ParameterDescription key="FunctionParameter_411" name="cCOP1n" order="1" role="modifier"/>
<ParameterDescription key="FunctionParameter_397" name="cE3n" order="2" role="modifier"/>
<ParameterDescription key="FunctionParameter_372" name="cE4" order="3" role="substrate"/>
<ParameterDescription key="FunctionParameter_403" name="cLUX" order="4" role="modifier"/>
<ParameterDescription key="FunctionParameter_413" name="def" order="5" role="volume"/>
<ParameterDescription key="FunctionParameter_393" name="m35" order="6" role="constant"/>
<ParameterDescription key="FunctionParameter_409" name="m36" order="7" role="constant"/>
<ParameterDescription key="FunctionParameter_405" name="m37" order="8" role="constant"/>
<ParameterDescription key="FunctionParameter_399" name="p21" order="9" role="constant"/>
<ParameterDescription key="FunctionParameter_395" name="p25" order="10" role="constant"/>
<ParameterDescription key="FunctionParameter_401" name="p26" order="11" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_70" name="function_4_cE3_m_trscr_1" type="UserDefined" reversible="false">
<Expression>
n3*g16^e/(cL^e+g16^e)/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_402" name="cL" order="0" role="modifier"/>
<ParameterDescription key="FunctionParameter_398" name="def" order="1" role="volume"/>
<ParameterDescription key="FunctionParameter_406" name="e" order="2" role="constant"/>
<ParameterDescription key="FunctionParameter_410" name="g16" order="3" role="constant"/>
<ParameterDescription key="FunctionParameter_414" name="n3" order="4" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_71" name="function_4_cE3_m_degr_1" type="UserDefined" reversible="false">
<Expression>
m26*cE3_m/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_404" name="cE3_m" order="0" role="substrate"/>
<ParameterDescription key="FunctionParameter_412" name="def" order="1" role="volume"/>
<ParameterDescription key="FunctionParameter_396" name="m26" order="2" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_72" name="function_4_cE3_trsl_1" type="UserDefined" reversible="false">
<Expression>
p16*cE3_m/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_400" name="cE3_m" order="0" role="modifier"/>
<ParameterDescription key="FunctionParameter_415" name="def" order="1" role="volume"/>
<ParameterDescription key="FunctionParameter_394" name="p16" order="2" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_73" name="function_4_cE3_degr_1" type="UserDefined" reversible="false">
<Expression>
m9*cE3*cCOP1c/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_418" name="cCOP1c" order="0" role="modifier"/>
<ParameterDescription key="FunctionParameter_408" name="cE3" order="1" role="substrate"/>
<ParameterDescription key="FunctionParameter_420" name="def" order="2" role="volume"/>
<ParameterDescription key="FunctionParameter_416" name="m9" order="3" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_74" name="function_4_cE3n_import_1" type="UserDefined" reversible="false">
<Expression>
(p19*cE3-p20*cE3n)/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_417" name="cE3" order="0" role="substrate"/>
<ParameterDescription key="FunctionParameter_424" name="cE3n" order="1" role="product"/>
<ParameterDescription key="FunctionParameter_426" name="def" order="2" role="volume"/>
<ParameterDescription key="FunctionParameter_421" name="p19" order="3" role="constant"/>
<ParameterDescription key="FunctionParameter_422" name="p20" order="4" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_75" name="function_4_cE3n_degr_1" type="UserDefined" reversible="false">
<Expression>
(m29*cE3n*cCOP1n+m30*cE3n*cCOP1d+p25*cE4*cE3n-p21*p25*cE4*cE3n/(p26*cLUX+p21+m37*cCOP1d+m36*cCOP1n)+p17*cE3n*p28*cG/(p29+m19+p17*cE3n))/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_431" name="cCOP1d" order="0" role="modifier"/>
<ParameterDescription key="FunctionParameter_419" name="cCOP1n" order="1" role="modifier"/>
<ParameterDescription key="FunctionParameter_423" name="cE3n" order="2" role="substrate"/>
<ParameterDescription key="FunctionParameter_435" name="cE4" order="3" role="modifier"/>
<ParameterDescription key="FunctionParameter_451" name="cG" order="4" role="modifier"/>
<ParameterDescription key="FunctionParameter_441" name="cLUX" order="5" role="modifier"/>
<ParameterDescription key="FunctionParameter_457" name="def" order="6" role="volume"/>
<ParameterDescription key="FunctionParameter_455" name="m19" order="7" role="constant"/>
<ParameterDescription key="FunctionParameter_427" name="m29" order="8" role="constant"/>
<ParameterDescription key="FunctionParameter_429" name="m30" order="9" role="constant"/>
<ParameterDescription key="FunctionParameter_445" name="m36" order="10" role="constant"/>
<ParameterDescription key="FunctionParameter_443" name="m37" order="11" role="constant"/>
<ParameterDescription key="FunctionParameter_447" name="p17" order="12" role="constant"/>
<ParameterDescription key="FunctionParameter_437" name="p21" order="13" role="constant"/>
<ParameterDescription key="FunctionParameter_433" name="p25" order="14" role="constant"/>
<ParameterDescription key="FunctionParameter_439" name="p26" order="15" role="constant"/>
<ParameterDescription key="FunctionParameter_449" name="p28" order="16" role="constant"/>
<ParameterDescription key="FunctionParameter_453" name="p29" order="17" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_76" name="function_4_cLUX_m_degr_1" type="UserDefined" reversible="false">
<Expression>
m34*cLUX_m/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_454" name="cLUX_m" order="0" role="substrate"/>
<ParameterDescription key="FunctionParameter_450" name="def" order="1" role="volume"/>
<ParameterDescription key="FunctionParameter_458" name="m34" order="2" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_77" name="function_4_cLUX_trsl_1" type="UserDefined" reversible="false">
<Expression>
p27*cLUX_m/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_456" name="cLUX_m" order="0" role="modifier"/>
<ParameterDescription key="FunctionParameter_444" name="def" order="1" role="volume"/>
<ParameterDescription key="FunctionParameter_448" name="p27" order="2" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_78" name="function_4_cLUX_degr_1" type="UserDefined" reversible="false">
<Expression>
(m39*cLUX+p26*cLUX*p25*cE4*cE3n/(p26*cLUX+p21+m37*cCOP1d+m36*cCOP1n))/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_463" name="cCOP1d" order="0" role="modifier"/>
<ParameterDescription key="FunctionParameter_467" name="cCOP1n" order="1" role="modifier"/>
<ParameterDescription key="FunctionParameter_384" name="cE3n" order="2" role="modifier"/>
<ParameterDescription key="FunctionParameter_430" name="cE4" order="3" role="modifier"/>
<ParameterDescription key="FunctionParameter_452" name="cLUX" order="4" role="substrate"/>
<ParameterDescription key="FunctionParameter_469" name="def" order="5" role="volume"/>
<ParameterDescription key="FunctionParameter_465" name="m36" order="6" role="constant"/>
<ParameterDescription key="FunctionParameter_461" name="m37" order="7" role="constant"/>
<ParameterDescription key="FunctionParameter_442" name="m39" order="8" role="constant"/>
<ParameterDescription key="FunctionParameter_459" name="p21" order="9" role="constant"/>
<ParameterDescription key="FunctionParameter_434" name="p25" order="10" role="constant"/>
<ParameterDescription key="FunctionParameter_438" name="p26" order="11" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_79" name="function_4_cCOP1c_trsl_1" type="UserDefined" reversible="false">
<Expression>
n5/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_466" name="def" order="0" role="volume"/>
<ParameterDescription key="FunctionParameter_470" name="n5" order="1" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_80" name="function_4_cCOP1n_import_1" type="UserDefined" reversible="false">
<Expression>
p6*cCOP1c/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_462" name="cCOP1c" order="0" role="substrate"/>
<ParameterDescription key="FunctionParameter_425" name="def" order="1" role="volume"/>
<ParameterDescription key="FunctionParameter_464" name="p6" order="2" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_81" name="function_4_cCOP1n_degr_1" type="UserDefined" reversible="false">
<Expression>
m27*cCOP1n*(1+p15*L)/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_446" name="L" order="0" role="constant"/>
<ParameterDescription key="FunctionParameter_468" name="cCOP1n" order="1" role="substrate"/>
<ParameterDescription key="FunctionParameter_472" name="def" order="2" role="volume"/>
<ParameterDescription key="FunctionParameter_428" name="m27" order="3" role="constant"/>
<ParameterDescription key="FunctionParameter_436" name="p15" order="4" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_82" name="function_4_cCOP1d_activ_1" type="UserDefined" reversible="false">
<Expression>
(n6*L*cP*cCOP1n+n14*cCOP1n)/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_440" name="L" order="0" role="constant"/>
<ParameterDescription key="FunctionParameter_475" name="cCOP1n" order="1" role="substrate"/>
<ParameterDescription key="FunctionParameter_460" name="cP" order="2" role="modifier"/>
<ParameterDescription key="FunctionParameter_479" name="def" order="3" role="volume"/>
<ParameterDescription key="FunctionParameter_477" name="n14" order="4" role="constant"/>
<ParameterDescription key="FunctionParameter_473" name="n6" order="5" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_83" name="function_4_cCOP1d_degr_1" type="UserDefined" reversible="false">
<Expression>
m31*(1+m33*D)*cCOP1d/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_432" name="D" order="0" role="constant"/>
<ParameterDescription key="FunctionParameter_481" name="cCOP1d" order="1" role="substrate"/>
<ParameterDescription key="FunctionParameter_483" name="def" order="2" role="volume"/>
<ParameterDescription key="FunctionParameter_480" name="m31" order="3" role="constant"/>
<ParameterDescription key="FunctionParameter_476" name="m33" order="4" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_84" name="function_4_cG_m_trscr" type="UserDefined" reversible="false">
<Expression>
(L*q2*cP+n12*g14/(cEC+g14)*g15^e/(cL^e+g15^e))/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_484" name="L" order="0" role="constant"/>
<ParameterDescription key="FunctionParameter_490" name="cEC" order="1" role="modifier"/>
<ParameterDescription key="FunctionParameter_496" name="cL" order="2" role="modifier"/>
<ParameterDescription key="FunctionParameter_478" name="cP" order="3" role="modifier"/>
<ParameterDescription key="FunctionParameter_498" name="def" order="4" role="volume"/>
<ParameterDescription key="FunctionParameter_494" name="e" order="5" role="constant"/>
<ParameterDescription key="FunctionParameter_488" name="g14" order="6" role="constant"/>
<ParameterDescription key="FunctionParameter_492" name="g15" order="7" role="constant"/>
<ParameterDescription key="FunctionParameter_486" name="n12" order="8" role="constant"/>
<ParameterDescription key="FunctionParameter_471" name="q2" order="9" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_85" name="function_4_cG_m_degr_1" type="UserDefined" reversible="false">
<Expression>
m18*cG_m/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_495" name="cG_m" order="0" role="substrate"/>
<ParameterDescription key="FunctionParameter_491" name="def" order="1" role="volume"/>
<ParameterDescription key="FunctionParameter_499" name="m18" order="2" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_86" name="function_4_cG_trsl_1" type="UserDefined" reversible="false">
<Expression>
p11*cG_m/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_497" name="cG_m" order="0" role="modifier"/>
<ParameterDescription key="FunctionParameter_485" name="def" order="1" role="volume"/>
<ParameterDescription key="FunctionParameter_489" name="p11" order="2" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_87" name="function_4_cG_degr_1" type="UserDefined" reversible="false">
<Expression>
(m19*cG+p28*cG-p29*p28*cG/(p29+m19+p17*cE3n))/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_506" name="cE3n" order="0" role="modifier"/>
<ParameterDescription key="FunctionParameter_493" name="cG" order="1" role="substrate"/>
<ParameterDescription key="FunctionParameter_508" name="def" order="2" role="volume"/>
<ParameterDescription key="FunctionParameter_474" name="m19" order="3" role="constant"/>
<ParameterDescription key="FunctionParameter_504" name="p17" order="4" role="constant"/>
<ParameterDescription key="FunctionParameter_500" name="p28" order="5" role="constant"/>
<ParameterDescription key="FunctionParameter_502" name="p29" order="6" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_88" name="function_4_cG_cZTL_assoc_1" type="UserDefined" reversible="true">
<Expression>
(p12*L*cZTL*cG-p13*D*cZG)/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_513" name="D" order="0" role="constant"/>
<ParameterDescription key="FunctionParameter_505" name="L" order="1" role="constant"/>
<ParameterDescription key="FunctionParameter_487" name="cG" order="2" role="substrate"/>
<ParameterDescription key="FunctionParameter_515" name="cZG" order="3" role="product"/>
<ParameterDescription key="FunctionParameter_501" name="cZTL" order="4" role="substrate"/>
<ParameterDescription key="FunctionParameter_517" name="def" order="5" role="volume"/>
<ParameterDescription key="FunctionParameter_509" name="p12" order="6" role="constant"/>
<ParameterDescription key="FunctionParameter_511" name="p13" order="7" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_89" name="function_4_cZTL_trsl_1" type="UserDefined" reversible="false">
<Expression>
p14/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_514" name="def" order="0" role="volume"/>
<ParameterDescription key="FunctionParameter_518" name="p14" order="1" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_90" name="function_4_cZTL_degr_1" type="UserDefined" reversible="false">
<Expression>
m20*cZTL/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_510" name="cZTL" order="0" role="substrate"/>
<ParameterDescription key="FunctionParameter_503" name="def" order="1" role="volume"/>
<ParameterDescription key="FunctionParameter_512" name="m20" order="2" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_91" name="function_4_cZG_degr_1" type="UserDefined" reversible="false">
<Expression>
m21*cZG/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_516" name="cZG" order="0" role="substrate"/>
<ParameterDescription key="FunctionParameter_520" name="def" order="1" role="volume"/>
<ParameterDescription key="FunctionParameter_507" name="m21" order="2" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_92" name="function_4_cG_cE3_assoc_1" type="UserDefined" reversible="false">
<Expression>
p17*cE3*cG/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_482" name="cE3" order="0" role="substrate"/>
<ParameterDescription key="FunctionParameter_523" name="cG" order="1" role="substrate"/>
<ParameterDescription key="FunctionParameter_525" name="def" order="2" role="volume"/>
<ParameterDescription key="FunctionParameter_521" name="p17" order="3" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_93" name="function_4_cEG_degr_1" type="UserDefined" reversible="false">
<MiriamAnnotation>
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
<rdf:Description rdf:about="#Function_93">
<dcterms:created>
<rdf:Description>
<dcterms:W3CDTF>2013-04-24T14:25:55Z</dcterms:W3CDTF>
</rdf:Description>
</dcterms:created>
</rdf:Description>
</rdf:RDF>
</MiriamAnnotation>
<Expression>
(m9*cEG*cCOP1c+p18*cEG-p31*(p18*cEG+p17*cE3n*p28*cG/(p29+m19+p17*cE3n))/(m9*cCOP1n+m10*cCOP1d+p31))/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_527" name="cCOP1c" order="0" role="modifier"/>
<ParameterDescription key="FunctionParameter_549" name="cCOP1d" order="1" role="modifier"/>
<ParameterDescription key="FunctionParameter_545" name="cCOP1n" order="2" role="modifier"/>
<ParameterDescription key="FunctionParameter_535" name="cE3n" order="3" role="modifier"/>
<ParameterDescription key="FunctionParameter_522" name="cEG" order="4" role="substrate"/>
<ParameterDescription key="FunctionParameter_539" name="cG" order="5" role="modifier"/>
<ParameterDescription key="FunctionParameter_551" name="def" order="6" role="volume"/>
<ParameterDescription key="FunctionParameter_547" name="m10" order="7" role="constant"/>
<ParameterDescription key="FunctionParameter_543" name="m19" order="8" role="constant"/>
<ParameterDescription key="FunctionParameter_526" name="m9" order="9" role="constant"/>
<ParameterDescription key="FunctionParameter_533" name="p17" order="10" role="constant"/>
<ParameterDescription key="FunctionParameter_529" name="p18" order="11" role="constant"/>
<ParameterDescription key="FunctionParameter_537" name="p28" order="12" role="constant"/>
<ParameterDescription key="FunctionParameter_541" name="p29" order="13" role="constant"/>
<ParameterDescription key="FunctionParameter_531" name="p31" order="14" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_94" name="function_4_cEC_form_1" type="UserDefined" reversible="false">
<Expression>
p26*cLUX*p25*cE4*cE3n/(p26*cLUX+p21+m37*cCOP1d+m36*cCOP1n)/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_524" name="cCOP1d" order="0" role="modifier"/>
<ParameterDescription key="FunctionParameter_556" name="cCOP1n" order="1" role="modifier"/>
<ParameterDescription key="FunctionParameter_536" name="cE3n" order="2" role="modifier"/>
<ParameterDescription key="FunctionParameter_540" name="cE4" order="3" role="modifier"/>
<ParameterDescription key="FunctionParameter_548" name="cLUX" order="4" role="modifier"/>
<ParameterDescription key="FunctionParameter_558" name="def" order="5" role="volume"/>
<ParameterDescription key="FunctionParameter_554" name="m36" order="6" role="constant"/>
<ParameterDescription key="FunctionParameter_528" name="m37" order="7" role="constant"/>
<ParameterDescription key="FunctionParameter_532" name="p21" order="8" role="constant"/>
<ParameterDescription key="FunctionParameter_544" name="p25" order="9" role="constant"/>
<ParameterDescription key="FunctionParameter_552" name="p26" order="10" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_95" name="function_4_cEC_degr_1" type="UserDefined" reversible="false">
<Expression>
(m36*cCOP1n*cEC+m37*cCOP1d*cEC+m32*cEC*(1+p24*L*(p28*cG/(p29+m19+p17*cE3n)+(p18*cEG+p17*cE3n*p28*cG/(p29+m19+p17*cE3n))/(m9*cCOP1n+m10*cCOP1d+p31))^d/((p28*cG/(p29+m19+p17*cE3n)+(p18*cEG+p17*cE3n*p28*cG/(p29+m19+p17*cE3n))/(m9*cCOP1n+m10*cCOP1d+p31))^d+g7^d)))/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_563" name="L" order="0" role="constant"/>
<ParameterDescription key="FunctionParameter_542" name="cCOP1d" order="1" role="modifier"/>
<ParameterDescription key="FunctionParameter_555" name="cCOP1n" order="2" role="modifier"/>
<ParameterDescription key="FunctionParameter_575" name="cE3n" order="3" role="modifier"/>
<ParameterDescription key="FunctionParameter_519" name="cEC" order="4" role="substrate"/>
<ParameterDescription key="FunctionParameter_579" name="cEG" order="5" role="modifier"/>
<ParameterDescription key="FunctionParameter_567" name="cG" order="6" role="modifier"/>
<ParameterDescription key="FunctionParameter_587" name="d" order="7" role="constant"/>
<ParameterDescription key="FunctionParameter_591" name="def" order="8" role="volume"/>
<ParameterDescription key="FunctionParameter_589" name="g7" order="9" role="constant"/>
<ParameterDescription key="FunctionParameter_583" name="m10" order="10" role="constant"/>
<ParameterDescription key="FunctionParameter_571" name="m19" order="11" role="constant"/>
<ParameterDescription key="FunctionParameter_550" name="m32" order="12" role="constant"/>
<ParameterDescription key="FunctionParameter_559" name="m36" order="13" role="constant"/>
<ParameterDescription key="FunctionParameter_534" name="m37" order="14" role="constant"/>
<ParameterDescription key="FunctionParameter_581" name="m9" order="15" role="constant"/>
<ParameterDescription key="FunctionParameter_573" name="p17" order="16" role="constant"/>
<ParameterDescription key="FunctionParameter_577" name="p18" order="17" role="constant"/>
<ParameterDescription key="FunctionParameter_561" name="p24" order="18" role="constant"/>
<ParameterDescription key="FunctionParameter_565" name="p28" order="19" role="constant"/>
<ParameterDescription key="FunctionParameter_569" name="p29" order="20" role="constant"/>
<ParameterDescription key="FunctionParameter_585" name="p31" order="21" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_96" name="function_4_cL_m_trscr_1" type="UserDefined" reversible="false">
<MiriamAnnotation>
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
<rdf:Description rdf:about="#Function_96">
<dcterms:created>
<rdf:Description>
<dcterms:W3CDTF>2013-04-25T13:28:16Z</dcterms:W3CDTF>
</rdf:Description>
</dcterms:created>
</rdf:Description>
</rdf:RDF>
</MiriamAnnotation>
<Expression>
((L*q1*cP+n1)*g1^a/((cP9+cP7+cNI+cT)^a+g1^a))/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_592" name="L" order="0" role="constant"/>
<ParameterDescription key="FunctionParameter_572" name="a" order="1" role="constant"/>
<ParameterDescription key="FunctionParameter_560" name="cNI" order="2" role="modifier"/>
<ParameterDescription key="FunctionParameter_584" name="cP" order="3" role="modifier"/>
<ParameterDescription key="FunctionParameter_564" name="cP7" order="4" role="modifier"/>
<ParameterDescription key="FunctionParameter_568" name="cP9" order="5" role="modifier"/>
<ParameterDescription key="FunctionParameter_538" name="cT" order="6" role="modifier"/>
<ParameterDescription key="FunctionParameter_553" name="def" order="7" role="volume"/>
<ParameterDescription key="FunctionParameter_576" name="g1" order="8" role="constant"/>
<ParameterDescription key="FunctionParameter_580" name="n1" order="9" role="constant"/>
<ParameterDescription key="FunctionParameter_588" name="q1" order="10" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_97" name="function_4_cCOP1c_degr_1" type="UserDefined" reversible="false">
<MiriamAnnotation>
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
<rdf:Description rdf:about="#Function_97">
<dcterms:created>
<rdf:Description>
<dcterms:W3CDTF>2013-04-25T11:40:44Z</dcterms:W3CDTF>
</rdf:Description>
</dcterms:created>
</rdf:Description>
</rdf:RDF>
</MiriamAnnotation>
<Expression>
m27*cCOP1c*(1+p15*L)/def
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_574" name="L" order="0" role="constant"/>
<ParameterDescription key="FunctionParameter_546" name="cCOP1c" order="1" role="substrate"/>
<ParameterDescription key="FunctionParameter_582" name="def" order="2" role="volume"/>
<ParameterDescription key="FunctionParameter_557" name="m27" order="3" role="constant"/>
<ParameterDescription key="FunctionParameter_566" name="p15" order="4" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_98" name="function_Y_syn" type="UserDefined" reversible="unspecified">
<MiriamAnnotation>
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
<rdf:Description rdf:about="#Function_98">
<dcterms:created>
<rdf:Description>
<dcterms:W3CDTF>2013-04-25T11:37:58Z</dcterms:W3CDTF>
</rdf:Description>
</dcterms:created>
</rdf:Description>
</rdf:RDF>
</MiriamAnnotation>
<Expression>
(1-L)*ksY
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_586" name="L" order="0" role="constant"/>
<ParameterDescription key="FunctionParameter_570" name="ksY" order="1" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_99" name="function_Y_deg" type="UserDefined" reversible="unspecified">
<MiriamAnnotation>
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
<rdf:Description rdf:about="#Function_99">
<dcterms:created>
<rdf:Description>
<dcterms:W3CDTF>2013-04-25T11:41:15Z</dcterms:W3CDTF>
</rdf:Description>
</dcterms:created>
</rdf:Description>
</rdf:RDF>
</MiriamAnnotation>
<Expression>
L*Y*kdY
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_562" name="L" order="0" role="constant"/>
<ParameterDescription key="FunctionParameter_530" name="Y" order="1" role="substrate"/>
<ParameterDescription key="FunctionParameter_593" name="kdY" order="2" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_100" name="function_T_syn" type="UserDefined" reversible="unspecified">
<MiriamAnnotation>
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
<rdf:Description rdf:about="#Function_100">
<dcterms:created>
<rdf:Description>
<dcterms:W3CDTF>2013-04-25T11:41:37Z</dcterms:W3CDTF>
</rdf:Description>
</dcterms:created>
</rdf:Description>
</rdf:RDF>
</MiriamAnnotation>
<Expression>
L*(ksT1 + ksT2*(cL + cLm)^2/(KsT2^2 + (cL + cLm)^2))
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_594" name="L" order="0" role="constant"/>
<ParameterDescription key="FunctionParameter_578" name="ksT1" order="1" role="constant"/>
<ParameterDescription key="FunctionParameter_596" name="ksT2" order="2" role="constant"/>
<ParameterDescription key="FunctionParameter_598" name="cL" order="3" role="modifier"/>
<ParameterDescription key="FunctionParameter_600" name="cLm" order="4" role="modifier"/>
<ParameterDescription key="FunctionParameter_602" name="KsT2" order="5" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_101" name="function_T_deg" type="UserDefined" reversible="unspecified">
<MiriamAnnotation>
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
<rdf:Description rdf:about="#Function_101">
<dcterms:created>
<rdf:Description>
<dcterms:W3CDTF>2013-04-25T11:46:19Z</dcterms:W3CDTF>
</rdf:Description>
</dcterms:created>
</rdf:Description>
</rdf:RDF>
</MiriamAnnotation>
<Expression>
(L*kdT1 + kdT2/(T + KdT2))*T
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_603" name="L" order="0" role="constant"/>
<ParameterDescription key="FunctionParameter_599" name="kdT1" order="1" role="constant"/>
<ParameterDescription key="FunctionParameter_595" name="kdT2" order="2" role="constant"/>
<ParameterDescription key="FunctionParameter_604" name="T" order="3" role="substrate"/>
<ParameterDescription key="FunctionParameter_606" name="KdT2" order="4" role="constant"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_102" name="function_X_syn" type="UserDefined" reversible="unspecified">
<MiriamAnnotation>
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
<rdf:Description rdf:about="#Function_102">
<dcterms:created>
<rdf:Description>
<dcterms:W3CDTF>2013-04-25T11:48:41Z</dcterms:W3CDTF>
</rdf:Description>
</dcterms:created>
</rdf:Description>
</rdf:RDF>
</MiriamAnnotation>
<Expression>
ksX*S
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_607" name="ksX" order="0" role="constant"/>
<ParameterDescription key="FunctionParameter_590" name="S" order="1" role="modifier"/>
</ListOfParameterDescriptions>
</Function>
<Function key="Function_103" name="function_X_deg" type="UserDefined" reversible="unspecified">
<MiriamAnnotation>
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
<rdf:Description rdf:about="#Function_103">
<dcterms:created>
<rdf:Description>
<dcterms:W3CDTF>2013-04-25T11:49:03Z</dcterms:W3CDTF>
</rdf:Description>
</dcterms:created>
</rdf:Description>
</rdf:RDF>
</MiriamAnnotation>
<Expression>
kdX*X*T
</Expression>
<ListOfParameterDescriptions>
<ParameterDescription key="FunctionParameter_597" name="kdX" order="0" role="constant"/>
<ParameterDescription key="FunctionParameter_601" name="X" order="1" role="substrate"/>
<ParameterDescription key="FunctionParameter_609" name="T" order="2" role="modifier"/>
</ListOfParameterDescriptions>
</Function>
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<KineticLaw function="Function_44">
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<ListOfSubstrates>
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<ListOfConstants>
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<KineticLaw function="Function_45">
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<Constant key="Parameter_1588" name="m13" value="1"/>
<Constant key="Parameter_1587" name="m22" value="1"/>
</ListOfConstants>
<KineticLaw function="Function_53">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_294">
<SourceParameter reference="ModelValue_110"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_316">
<SourceParameter reference="Metabolite_22"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_318">
<SourceParameter reference="Compartment_0"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_298">
<SourceParameter reference="ModelValue_42"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_308">
<SourceParameter reference="ModelValue_51"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_12" name="cP7_m_trscr" reversible="false">
<ListOfProducts>
<Product metabolite="Metabolite_21" stoichiometry="1"/>
</ListOfProducts>
<ListOfModifiers>
<Modifier metabolite="Metabolite_12" stoichiometry="1"/>
<Modifier metabolite="Metabolite_16" stoichiometry="1"/>
<Modifier metabolite="Metabolite_22" stoichiometry="1"/>
</ListOfModifiers>
<ListOfConstants>
<Constant key="Parameter_1586" name="e" value="1"/>
<Constant key="Parameter_1585" name="f" value="1"/>
<Constant key="Parameter_1584" name="g10" value="1"/>
<Constant key="Parameter_1583" name="g11" value="1"/>
<Constant key="Parameter_1582" name="n8" value="1"/>
<Constant key="Parameter_1581" name="n9" value="1"/>
</ListOfConstants>
<KineticLaw function="Function_54">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_302">
<SourceParameter reference="Metabolite_12"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_315">
<SourceParameter reference="Metabolite_16"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_327">
<SourceParameter reference="Metabolite_22"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_333">
<SourceParameter reference="Compartment_0"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_321">
<SourceParameter reference="ModelValue_73"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_329">
<SourceParameter reference="ModelValue_74"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_323">
<SourceParameter reference="ModelValue_23"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_331">
<SourceParameter reference="ModelValue_24"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_319">
<SourceParameter reference="ModelValue_7"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_325">
<SourceParameter reference="ModelValue_8"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_13" name="cP7_m_degr" reversible="false">
<ListOfSubstrates>
<Substrate metabolite="Metabolite_21" stoichiometry="1"/>
</ListOfSubstrates>
<ListOfConstants>
<Constant key="Parameter_1580" name="m14" value="1"/>
</ListOfConstants>
<KineticLaw function="Function_55">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_330">
<SourceParameter reference="Metabolite_21"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_326">
<SourceParameter reference="Compartment_0"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_334">
<SourceParameter reference="ModelValue_43"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_14" name="cP7_trsl" reversible="false">
<ListOfProducts>
<Product metabolite="Metabolite_20" stoichiometry="1"/>
</ListOfProducts>
<ListOfModifiers>
<Modifier metabolite="Metabolite_21" stoichiometry="1"/>
</ListOfModifiers>
<ListOfConstants>
<Constant key="Parameter_1579" name="p9" value="1"/>
</ListOfConstants>
<KineticLaw function="Function_56">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_332">
<SourceParameter reference="Metabolite_21"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_320">
<SourceParameter reference="Compartment_0"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_324">
<SourceParameter reference="ModelValue_83"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_15" name="cP7_degr" reversible="false">
<ListOfSubstrates>
<Substrate metabolite="Metabolite_20" stoichiometry="1"/>
</ListOfSubstrates>
<ListOfConstants>
<Constant key="Parameter_1578" name="D" value="1"/>
<Constant key="Parameter_1577" name="m15" value="1"/>
<Constant key="Parameter_1576" name="m23" value="1"/>
</ListOfConstants>
<KineticLaw function="Function_57">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_335">
<SourceParameter reference="ModelValue_110"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_337">
<SourceParameter reference="Metabolite_20"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_339">
<SourceParameter reference="Compartment_0"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_290">
<SourceParameter reference="ModelValue_44"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_328">
<SourceParameter reference="ModelValue_52"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_16" name="cNI_m_trscr" reversible="false">
<ListOfProducts>
<Product metabolite="Metabolite_18" stoichiometry="1"/>
</ListOfProducts>
<ListOfModifiers>
<Modifier metabolite="Metabolite_16" stoichiometry="1"/>
<Modifier metabolite="Metabolite_20" stoichiometry="1"/>
</ListOfModifiers>
<ListOfConstants>
<Constant key="Parameter_1575" name="b" value="1"/>
<Constant key="Parameter_1574" name="e" value="1"/>
<Constant key="Parameter_1573" name="g12" value="1"/>
<Constant key="Parameter_1572" name="g13" value="1"/>
<Constant key="Parameter_1571" name="n10" value="1"/>
<Constant key="Parameter_1570" name="n11" value="1"/>
</ListOfConstants>
<KineticLaw function="Function_58">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_348">
<SourceParameter reference="ModelValue_70"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_336">
<SourceParameter reference="Metabolite_16"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_346">
<SourceParameter reference="Metabolite_20"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_352">
<SourceParameter reference="Compartment_0"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_322">
<SourceParameter reference="ModelValue_73"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_342">
<SourceParameter reference="ModelValue_25"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_350">
<SourceParameter reference="ModelValue_26"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_340">
<SourceParameter reference="ModelValue_9"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_344">
<SourceParameter reference="ModelValue_10"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_17" name="cNI_m_degr" reversible="false">
<ListOfSubstrates>
<Substrate metabolite="Metabolite_18" stoichiometry="1"/>
</ListOfSubstrates>
<ListOfConstants>
<Constant key="Parameter_1569" name="m16" value="1"/>
</ListOfConstants>
<KineticLaw function="Function_59">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_349">
<SourceParameter reference="Metabolite_18"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_345">
<SourceParameter reference="Compartment_0"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_353">
<SourceParameter reference="ModelValue_45"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_18" name="cNI_trsl" reversible="false">
<ListOfProducts>
<Product metabolite="Metabolite_17" stoichiometry="1"/>
</ListOfProducts>
<ListOfModifiers>
<Modifier metabolite="Metabolite_18" stoichiometry="1"/>
</ListOfModifiers>
<ListOfConstants>
<Constant key="Parameter_1568" name="p10" value="1"/>
</ListOfConstants>
<KineticLaw function="Function_60">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_351">
<SourceParameter reference="Metabolite_18"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_317">
<SourceParameter reference="Compartment_0"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_343">
<SourceParameter reference="ModelValue_84"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_19" name="cNI_degr" reversible="false">
<ListOfSubstrates>
<Substrate metabolite="Metabolite_17" stoichiometry="1"/>
</ListOfSubstrates>
<ListOfConstants>
<Constant key="Parameter_1567" name="D" value="1"/>
<Constant key="Parameter_1566" name="m17" value="1"/>
<Constant key="Parameter_1565" name="m24" value="1"/>
</ListOfConstants>
<KineticLaw function="Function_61">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_355">
<SourceParameter reference="ModelValue_110"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_357">
<SourceParameter reference="Metabolite_17"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_359">
<SourceParameter reference="Compartment_0"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_338">
<SourceParameter reference="ModelValue_46"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_347">
<SourceParameter reference="ModelValue_53"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_20" name="cT_m_trscr" reversible="false">
<ListOfProducts>
<Product metabolite="Metabolite_25" stoichiometry="1"/>
</ListOfProducts>
<ListOfModifiers>
<Modifier metabolite="Metabolite_8" stoichiometry="1"/>
<Modifier metabolite="Metabolite_12" stoichiometry="1"/>
</ListOfModifiers>
<ListOfConstants>
<Constant key="Parameter_1564" name="e" value="1"/>
<Constant key="Parameter_1563" name="g4" value="1"/>
<Constant key="Parameter_1562" name="g5" value="1"/>
<Constant key="Parameter_1561" name="n2" value="1"/>
</ListOfConstants>
<KineticLaw function="Function_62">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_341">
<SourceParameter reference="Metabolite_8"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_366">
<SourceParameter reference="Metabolite_12"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_368">
<SourceParameter reference="Compartment_0"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_364">
<SourceParameter reference="ModelValue_73"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_356">
<SourceParameter reference="ModelValue_17"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_362">
<SourceParameter reference="ModelValue_18"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_360">
<SourceParameter reference="ModelValue_1"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_21" name="cT_m_degr" reversible="false">
<ListOfSubstrates>
<Substrate metabolite="Metabolite_25" stoichiometry="1"/>
</ListOfSubstrates>
<ListOfConstants>
<Constant key="Parameter_1560" name="m5" value="1"/>
</ListOfConstants>
<KineticLaw function="Function_63">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_365">
<SourceParameter reference="Metabolite_25"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_361">
<SourceParameter reference="Compartment_0"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_369">
<SourceParameter reference="ModelValue_34"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_22" name="cT_trsl" reversible="false">
<ListOfProducts>
<Product metabolite="Metabolite_24" stoichiometry="1"/>
</ListOfProducts>
<ListOfModifiers>
<Modifier metabolite="Metabolite_25" stoichiometry="1"/>
</ListOfModifiers>
<ListOfConstants>
<Constant key="Parameter_1559" name="p4" value="1"/>
</ListOfConstants>
<KineticLaw function="Function_64">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_367">
<SourceParameter reference="Metabolite_25"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_370">
<SourceParameter reference="Compartment_0"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_354">
<SourceParameter reference="ModelValue_78"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_23" name="cT_degr" reversible="false">
<ListOfSubstrates>
<Substrate metabolite="Metabolite_24" stoichiometry="1"/>
</ListOfSubstrates>
<ListOfModifiers>
<Modifier metabolite="Metabolite_26" stoichiometry="1"/>
<Modifier metabolite="Metabolite_27" stoichiometry="1"/>
</ListOfModifiers>
<ListOfConstants>
<Constant key="Parameter_1558" name="D" value="1"/>
<Constant key="Parameter_1557" name="m6" value="1"/>
<Constant key="Parameter_1556" name="m7" value="1"/>
<Constant key="Parameter_1555" name="m8" value="1"/>
<Constant key="Parameter_1554" name="p5" value="1"/>
</ListOfConstants>
<KineticLaw function="Function_65">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_373">
<SourceParameter reference="ModelValue_110"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_375">
<SourceParameter reference="Metabolite_24"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_381">
<SourceParameter reference="Metabolite_26"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_379">
<SourceParameter reference="Metabolite_27"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_385">
<SourceParameter reference="Compartment_0"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_371">
<SourceParameter reference="ModelValue_35"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_363">
<SourceParameter reference="ModelValue_36"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_383">
<SourceParameter reference="ModelValue_37"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_377">
<SourceParameter reference="ModelValue_79"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_24" name="cE4_m_trscr" reversible="false">
<ListOfProducts>
<Product metabolite="Metabolite_7" stoichiometry="1"/>
</ListOfProducts>
<ListOfModifiers>
<Modifier metabolite="Metabolite_8" stoichiometry="1"/>
<Modifier metabolite="Metabolite_12" stoichiometry="1"/>
</ListOfModifiers>
<ListOfConstants>
<Constant key="Parameter_1553" name="e" value="1"/>
<Constant key="Parameter_1552" name="g2" value="1"/>
<Constant key="Parameter_1551" name="g6" value="1"/>
<Constant key="Parameter_1550" name="n13" value="1"/>
</ListOfConstants>
<KineticLaw function="Function_66">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_378">
<SourceParameter reference="Metabolite_8"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_388">
<SourceParameter reference="Metabolite_12"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_390">
<SourceParameter reference="Compartment_0"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_358">
<SourceParameter reference="ModelValue_73"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_382">
<SourceParameter reference="ModelValue_15"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_374">
<SourceParameter reference="ModelValue_19"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_386">
<SourceParameter reference="ModelValue_12"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_25" name="cE4_m_degr" reversible="false">
<ListOfSubstrates>
<Substrate metabolite="Metabolite_7" stoichiometry="1"/>
</ListOfSubstrates>
<ListOfConstants>
<Constant key="Parameter_1549" name="m34" value="1"/>
</ListOfConstants>
<KineticLaw function="Function_67">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_387">
<SourceParameter reference="Metabolite_7"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_376">
<SourceParameter reference="Compartment_0"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_391">
<SourceParameter reference="ModelValue_63"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_26" name="cE4_trsl" reversible="false">
<ListOfProducts>
<Product metabolite="Metabolite_6" stoichiometry="1"/>
</ListOfProducts>
<ListOfModifiers>
<Modifier metabolite="Metabolite_7" stoichiometry="1"/>
</ListOfModifiers>
<ListOfConstants>
<Constant key="Parameter_1548" name="p23" value="1"/>
</ListOfConstants>
<KineticLaw function="Function_68">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_389">
<SourceParameter reference="Metabolite_7"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_392">
<SourceParameter reference="Compartment_0"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_380">
<SourceParameter reference="ModelValue_97"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_27" name="cE4_degr" reversible="false">
<ListOfSubstrates>
<Substrate metabolite="Metabolite_6" stoichiometry="1"/>
</ListOfSubstrates>
<ListOfModifiers>
<Modifier metabolite="Metabolite_1" stoichiometry="1"/>
<Modifier metabolite="Metabolite_2" stoichiometry="1"/>
<Modifier metabolite="Metabolite_5" stoichiometry="1"/>
<Modifier metabolite="Metabolite_13" stoichiometry="1"/>
</ListOfModifiers>
<ListOfConstants>
<Constant key="Parameter_1547" name="m35" value="1"/>
<Constant key="Parameter_1546" name="m36" value="1"/>
<Constant key="Parameter_1545" name="m37" value="1"/>
<Constant key="Parameter_1544" name="p21" value="1"/>
<Constant key="Parameter_1543" name="p25" value="1"/>
<Constant key="Parameter_1542" name="p26" value="1"/>
</ListOfConstants>
<KineticLaw function="Function_69">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_407">
<SourceParameter reference="Metabolite_1"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_411">
<SourceParameter reference="Metabolite_2"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_397">
<SourceParameter reference="Metabolite_5"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_372">
<SourceParameter reference="Metabolite_6"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_403">
<SourceParameter reference="Metabolite_13"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_413">
<SourceParameter reference="Compartment_0"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_393">
<SourceParameter reference="ModelValue_64"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_409">
<SourceParameter reference="ModelValue_65"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_405">
<SourceParameter reference="ModelValue_66"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_399">
<SourceParameter reference="ModelValue_95"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_395">
<SourceParameter reference="ModelValue_99"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_401">
<SourceParameter reference="ModelValue_100"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_28" name="cE3_m_trscr" reversible="false">
<ListOfProducts>
<Product metabolite="Metabolite_4" stoichiometry="1"/>
</ListOfProducts>
<ListOfModifiers>
<Modifier metabolite="Metabolite_12" stoichiometry="1"/>
</ListOfModifiers>
<ListOfConstants>
<Constant key="Parameter_1541" name="e" value="1"/>
<Constant key="Parameter_1540" name="g16" value="1"/>
<Constant key="Parameter_1539" name="n3" value="1"/>
</ListOfConstants>
<KineticLaw function="Function_70">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_402">
<SourceParameter reference="Metabolite_12"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_398">
<SourceParameter reference="Compartment_0"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_406">
<SourceParameter reference="ModelValue_73"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_410">
<SourceParameter reference="ModelValue_29"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_414">
<SourceParameter reference="ModelValue_2"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_29" name="cE3_m_degr" reversible="false">
<ListOfSubstrates>
<Substrate metabolite="Metabolite_4" stoichiometry="1"/>
</ListOfSubstrates>
<ListOfConstants>
<Constant key="Parameter_1538" name="m26" value="1"/>
</ListOfConstants>
<KineticLaw function="Function_71">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_404">
<SourceParameter reference="Metabolite_4"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_412">
<SourceParameter reference="Compartment_0"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_396">
<SourceParameter reference="ModelValue_55"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_30" name="cE3_trsl" reversible="false">
<ListOfProducts>
<Product metabolite="Metabolite_3" stoichiometry="1"/>
</ListOfProducts>
<ListOfModifiers>
<Modifier metabolite="Metabolite_4" stoichiometry="1"/>
</ListOfModifiers>
<ListOfConstants>
<Constant key="Parameter_1537" name="p16" value="1"/>
</ListOfConstants>
<KineticLaw function="Function_72">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_400">
<SourceParameter reference="Metabolite_4"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_415">
<SourceParameter reference="Compartment_0"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_394">
<SourceParameter reference="ModelValue_90"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_31" name="cE3_degr" reversible="false">
<ListOfSubstrates>
<Substrate metabolite="Metabolite_3" stoichiometry="1"/>
</ListOfSubstrates>
<ListOfModifiers>
<Modifier metabolite="Metabolite_0" stoichiometry="1"/>
</ListOfModifiers>
<ListOfConstants>
<Constant key="Parameter_1536" name="m9" value="1"/>
</ListOfConstants>
<KineticLaw function="Function_73">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_418">
<SourceParameter reference="Metabolite_0"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_408">
<SourceParameter reference="Metabolite_3"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_420">
<SourceParameter reference="Compartment_0"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_416">
<SourceParameter reference="ModelValue_38"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_32" name="cE3n_import" reversible="false">
<ListOfSubstrates>
<Substrate metabolite="Metabolite_3" stoichiometry="1"/>
</ListOfSubstrates>
<ListOfProducts>
<Product metabolite="Metabolite_5" stoichiometry="1"/>
</ListOfProducts>
<ListOfConstants>
<Constant key="Parameter_1535" name="p19" value="1"/>
<Constant key="Parameter_1534" name="p20" value="1"/>
</ListOfConstants>
<KineticLaw function="Function_74">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_417">
<SourceParameter reference="Metabolite_3"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_424">
<SourceParameter reference="Metabolite_5"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_426">
<SourceParameter reference="Compartment_0"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_421">
<SourceParameter reference="ModelValue_93"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_422">
<SourceParameter reference="ModelValue_94"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_33" name="cE3n_degr" reversible="false">
<ListOfSubstrates>
<Substrate metabolite="Metabolite_5" stoichiometry="1"/>
</ListOfSubstrates>
<ListOfModifiers>
<Modifier metabolite="Metabolite_1" stoichiometry="1"/>
<Modifier metabolite="Metabolite_2" stoichiometry="1"/>
<Modifier metabolite="Metabolite_6" stoichiometry="1"/>
<Modifier metabolite="Metabolite_10" stoichiometry="1"/>
<Modifier metabolite="Metabolite_13" stoichiometry="1"/>
</ListOfModifiers>
<ListOfConstants>
<Constant key="Parameter_1533" name="m19" value="1"/>
<Constant key="Parameter_1532" name="m29" value="1"/>
<Constant key="Parameter_1531" name="m30" value="1"/>
<Constant key="Parameter_1530" name="m36" value="1"/>
<Constant key="Parameter_1529" name="m37" value="1"/>
<Constant key="Parameter_1528" name="p17" value="1"/>
<Constant key="Parameter_1527" name="p21" value="1"/>
<Constant key="Parameter_1526" name="p25" value="1"/>
<Constant key="Parameter_1525" name="p26" value="1"/>
<Constant key="Parameter_1524" name="p28" value="1"/>
<Constant key="Parameter_1523" name="p29" value="1"/>
</ListOfConstants>
<KineticLaw function="Function_75">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_431">
<SourceParameter reference="Metabolite_1"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_419">
<SourceParameter reference="Metabolite_2"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_423">
<SourceParameter reference="Metabolite_5"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_435">
<SourceParameter reference="Metabolite_6"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_451">
<SourceParameter reference="Metabolite_10"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_441">
<SourceParameter reference="Metabolite_13"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_457">
<SourceParameter reference="Compartment_0"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_455">
<SourceParameter reference="ModelValue_48"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_427">
<SourceParameter reference="ModelValue_58"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_429">
<SourceParameter reference="ModelValue_59"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_445">
<SourceParameter reference="ModelValue_65"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_443">
<SourceParameter reference="ModelValue_66"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_447">
<SourceParameter reference="ModelValue_91"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_437">
<SourceParameter reference="ModelValue_95"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_433">
<SourceParameter reference="ModelValue_99"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_439">
<SourceParameter reference="ModelValue_100"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_449">
<SourceParameter reference="ModelValue_102"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_453">
<SourceParameter reference="ModelValue_103"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_34" name="cLUX_m_trscr" reversible="false">
<ListOfProducts>
<Product metabolite="Metabolite_14" stoichiometry="1"/>
</ListOfProducts>
<ListOfModifiers>
<Modifier metabolite="Metabolite_8" stoichiometry="1"/>
<Modifier metabolite="Metabolite_12" stoichiometry="1"/>
</ListOfModifiers>
<ListOfConstants>
<Constant key="Parameter_1522" name="e" value="1"/>
<Constant key="Parameter_1521" name="g2" value="1"/>
<Constant key="Parameter_1520" name="g6" value="1"/>
<Constant key="Parameter_1519" name="n13" value="1"/>
</ListOfConstants>
<KineticLaw function="Function_66">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_378">
<SourceParameter reference="Metabolite_8"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_388">
<SourceParameter reference="Metabolite_12"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_390">
<SourceParameter reference="Compartment_0"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_358">
<SourceParameter reference="ModelValue_73"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_382">
<SourceParameter reference="ModelValue_15"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_374">
<SourceParameter reference="ModelValue_19"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_386">
<SourceParameter reference="ModelValue_12"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_35" name="cLUX_m_degr" reversible="false">
<ListOfSubstrates>
<Substrate metabolite="Metabolite_14" stoichiometry="1"/>
</ListOfSubstrates>
<ListOfConstants>
<Constant key="Parameter_1518" name="m34" value="1"/>
</ListOfConstants>
<KineticLaw function="Function_76">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_454">
<SourceParameter reference="Metabolite_14"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_450">
<SourceParameter reference="Compartment_0"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_458">
<SourceParameter reference="ModelValue_63"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_36" name="cLUX_trsl" reversible="false">
<ListOfProducts>
<Product metabolite="Metabolite_13" stoichiometry="1"/>
</ListOfProducts>
<ListOfModifiers>
<Modifier metabolite="Metabolite_14" stoichiometry="1"/>
</ListOfModifiers>
<ListOfConstants>
<Constant key="Parameter_1517" name="p27" value="1"/>
</ListOfConstants>
<KineticLaw function="Function_77">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_456">
<SourceParameter reference="Metabolite_14"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_444">
<SourceParameter reference="Compartment_0"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_448">
<SourceParameter reference="ModelValue_101"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_37" name="cLUX_degr" reversible="false">
<ListOfSubstrates>
<Substrate metabolite="Metabolite_13" stoichiometry="1"/>
</ListOfSubstrates>
<ListOfModifiers>
<Modifier metabolite="Metabolite_1" stoichiometry="1"/>
<Modifier metabolite="Metabolite_2" stoichiometry="1"/>
<Modifier metabolite="Metabolite_5" stoichiometry="1"/>
<Modifier metabolite="Metabolite_6" stoichiometry="1"/>
</ListOfModifiers>
<ListOfConstants>
<Constant key="Parameter_1516" name="m36" value="1"/>
<Constant key="Parameter_1515" name="m37" value="1"/>
<Constant key="Parameter_1514" name="m39" value="1"/>
<Constant key="Parameter_1513" name="p21" value="1"/>
<Constant key="Parameter_1512" name="p25" value="1"/>
<Constant key="Parameter_1511" name="p26" value="1"/>
</ListOfConstants>
<KineticLaw function="Function_78">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_463">
<SourceParameter reference="Metabolite_1"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_467">
<SourceParameter reference="Metabolite_2"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_384">
<SourceParameter reference="Metabolite_5"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_430">
<SourceParameter reference="Metabolite_6"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_452">
<SourceParameter reference="Metabolite_13"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_469">
<SourceParameter reference="Compartment_0"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_465">
<SourceParameter reference="ModelValue_65"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_461">
<SourceParameter reference="ModelValue_66"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_442">
<SourceParameter reference="ModelValue_68"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_459">
<SourceParameter reference="ModelValue_95"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_434">
<SourceParameter reference="ModelValue_99"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_438">
<SourceParameter reference="ModelValue_100"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_38" name="cCOP1c_trsl" reversible="false">
<ListOfProducts>
<Product metabolite="Metabolite_0" stoichiometry="1"/>
</ListOfProducts>
<ListOfConstants>
<Constant key="Parameter_1510" name="n5" value="1"/>
</ListOfConstants>
<KineticLaw function="Function_79">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_466">
<SourceParameter reference="Compartment_0"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_470">
<SourceParameter reference="ModelValue_4"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_39" name="cCOP1c_degr" reversible="false">
<ListOfSubstrates>
<Substrate metabolite="Metabolite_0" stoichiometry="1"/>
</ListOfSubstrates>
<ListOfConstants>
<Constant key="Parameter_1509" name="L" value="1"/>
<Constant key="Parameter_1508" name="m27" value="1"/>
<Constant key="Parameter_1507" name="p15" value="1"/>
</ListOfConstants>
<KineticLaw function="Function_97">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_574">
<SourceParameter reference="ModelValue_109"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_546">
<SourceParameter reference="Metabolite_0"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_582">
<SourceParameter reference="Compartment_0"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_557">
<SourceParameter reference="ModelValue_56"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_566">
<SourceParameter reference="ModelValue_89"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_40" name="cCOP1n_import" reversible="false">
<ListOfSubstrates>
<Substrate metabolite="Metabolite_0" stoichiometry="1"/>
</ListOfSubstrates>
<ListOfProducts>
<Product metabolite="Metabolite_2" stoichiometry="1"/>
</ListOfProducts>
<ListOfConstants>
<Constant key="Parameter_1506" name="p6" value="1"/>
</ListOfConstants>
<KineticLaw function="Function_80">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_462">
<SourceParameter reference="Metabolite_0"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_425">
<SourceParameter reference="Compartment_0"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_464">
<SourceParameter reference="ModelValue_80"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_41" name="cCOP1n_degr" reversible="false">
<ListOfSubstrates>
<Substrate metabolite="Metabolite_2" stoichiometry="1"/>
</ListOfSubstrates>
<ListOfConstants>
<Constant key="Parameter_1505" name="L" value="1"/>
<Constant key="Parameter_1504" name="m27" value="1"/>
<Constant key="Parameter_1503" name="p15" value="1"/>
</ListOfConstants>
<KineticLaw function="Function_81">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_446">
<SourceParameter reference="ModelValue_109"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_468">
<SourceParameter reference="Metabolite_2"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_472">
<SourceParameter reference="Compartment_0"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_428">
<SourceParameter reference="ModelValue_56"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_436">
<SourceParameter reference="ModelValue_89"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_42" name="cCOP1d_activ" reversible="false">
<ListOfSubstrates>
<Substrate metabolite="Metabolite_2" stoichiometry="1"/>
</ListOfSubstrates>
<ListOfProducts>
<Product metabolite="Metabolite_1" stoichiometry="1"/>
</ListOfProducts>
<ListOfModifiers>
<Modifier metabolite="Metabolite_19" stoichiometry="1"/>
</ListOfModifiers>
<ListOfConstants>
<Constant key="Parameter_1502" name="L" value="1"/>
<Constant key="Parameter_1501" name="n14" value="1"/>
<Constant key="Parameter_1500" name="n6" value="1"/>
</ListOfConstants>
<KineticLaw function="Function_82">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_440">
<SourceParameter reference="ModelValue_109"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_475">
<SourceParameter reference="Metabolite_2"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_460">
<SourceParameter reference="Metabolite_19"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_479">
<SourceParameter reference="Compartment_0"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_477">
<SourceParameter reference="ModelValue_13"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_473">
<SourceParameter reference="ModelValue_5"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_43" name="cCOP1d_degr" reversible="false">
<ListOfSubstrates>
<Substrate metabolite="Metabolite_1" stoichiometry="1"/>
</ListOfSubstrates>
<ListOfConstants>
<Constant key="Parameter_1499" name="D" value="1"/>
<Constant key="Parameter_1498" name="m31" value="1"/>
<Constant key="Parameter_1497" name="m33" value="1"/>
</ListOfConstants>
<KineticLaw function="Function_83">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_432">
<SourceParameter reference="ModelValue_110"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_481">
<SourceParameter reference="Metabolite_1"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_483">
<SourceParameter reference="Compartment_0"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_480">
<SourceParameter reference="ModelValue_60"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_476">
<SourceParameter reference="ModelValue_62"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_44" name="cG_m_trscr" reversible="false">
<ListOfProducts>
<Product metabolite="Metabolite_11" stoichiometry="1"/>
</ListOfProducts>
<ListOfModifiers>
<Modifier metabolite="Metabolite_8" stoichiometry="1"/>
<Modifier metabolite="Metabolite_12" stoichiometry="1"/>
<Modifier metabolite="Metabolite_19" stoichiometry="1"/>
</ListOfModifiers>
<ListOfConstants>
<Constant key="Parameter_1496" name="L" value="1"/>
<Constant key="Parameter_1495" name="e" value="1"/>
<Constant key="Parameter_1494" name="g14" value="1"/>
<Constant key="Parameter_1493" name="g15" value="1"/>
<Constant key="Parameter_1492" name="n12" value="1"/>
<Constant key="Parameter_1491" name="q2" value="1"/>
</ListOfConstants>
<KineticLaw function="Function_84">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_484">
<SourceParameter reference="ModelValue_109"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_490">
<SourceParameter reference="Metabolite_8"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_496">
<SourceParameter reference="Metabolite_12"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_478">
<SourceParameter reference="Metabolite_19"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_498">
<SourceParameter reference="Compartment_0"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_494">
<SourceParameter reference="ModelValue_73"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_488">
<SourceParameter reference="ModelValue_27"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_492">
<SourceParameter reference="ModelValue_28"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_486">
<SourceParameter reference="ModelValue_11"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_471">
<SourceParameter reference="ModelValue_107"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_45" name="cG_m_degr" reversible="false">
<ListOfSubstrates>
<Substrate metabolite="Metabolite_11" stoichiometry="1"/>
</ListOfSubstrates>
<ListOfConstants>
<Constant key="Parameter_1490" name="m18" value="1"/>
</ListOfConstants>
<KineticLaw function="Function_85">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_495">
<SourceParameter reference="Metabolite_11"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_491">
<SourceParameter reference="Compartment_0"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_499">
<SourceParameter reference="ModelValue_47"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_46" name="cG_trsl" reversible="false">
<ListOfProducts>
<Product metabolite="Metabolite_10" stoichiometry="1"/>
</ListOfProducts>
<ListOfModifiers>
<Modifier metabolite="Metabolite_11" stoichiometry="1"/>
</ListOfModifiers>
<ListOfConstants>
<Constant key="Parameter_1489" name="p11" value="1"/>
</ListOfConstants>
<KineticLaw function="Function_86">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_497">
<SourceParameter reference="Metabolite_11"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_485">
<SourceParameter reference="Compartment_0"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_489">
<SourceParameter reference="ModelValue_85"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_47" name="cG_degr" reversible="false">
<ListOfSubstrates>
<Substrate metabolite="Metabolite_10" stoichiometry="1"/>
</ListOfSubstrates>
<ListOfModifiers>
<Modifier metabolite="Metabolite_5" stoichiometry="1"/>
</ListOfModifiers>
<ListOfConstants>
<Constant key="Parameter_1488" name="m19" value="1"/>
<Constant key="Parameter_1487" name="p17" value="1"/>
<Constant key="Parameter_1486" name="p28" value="1"/>
<Constant key="Parameter_1485" name="p29" value="1"/>
</ListOfConstants>
<KineticLaw function="Function_87">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_506">
<SourceParameter reference="Metabolite_5"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_493">
<SourceParameter reference="Metabolite_10"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_508">
<SourceParameter reference="Compartment_0"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_474">
<SourceParameter reference="ModelValue_48"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_504">
<SourceParameter reference="ModelValue_91"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_500">
<SourceParameter reference="ModelValue_102"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_502">
<SourceParameter reference="ModelValue_103"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_48" name="cG_cZTL_assoc" reversible="true">
<ListOfSubstrates>
<Substrate metabolite="Metabolite_10" stoichiometry="1"/>
<Substrate metabolite="Metabolite_27" stoichiometry="1"/>
</ListOfSubstrates>
<ListOfProducts>
<Product metabolite="Metabolite_26" stoichiometry="1"/>
</ListOfProducts>
<ListOfConstants>
<Constant key="Parameter_1484" name="D" value="1"/>
<Constant key="Parameter_1483" name="L" value="1"/>
<Constant key="Parameter_1482" name="p12" value="1"/>
<Constant key="Parameter_1481" name="p13" value="1"/>
</ListOfConstants>
<KineticLaw function="Function_88">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_513">
<SourceParameter reference="ModelValue_110"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_505">
<SourceParameter reference="ModelValue_109"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_487">
<SourceParameter reference="Metabolite_10"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_515">
<SourceParameter reference="Metabolite_26"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_501">
<SourceParameter reference="Metabolite_27"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_517">
<SourceParameter reference="Compartment_0"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_509">
<SourceParameter reference="ModelValue_86"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_511">
<SourceParameter reference="ModelValue_87"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_49" name="cZTL_trsl" reversible="false">
<MiriamAnnotation>
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
<rdf:Description rdf:about="#Reaction_49">
<dcterms:created>
<rdf:Description>
<dcterms:W3CDTF>2013-04-24T14:28:58Z</dcterms:W3CDTF>
</rdf:Description>
</dcterms:created>
</rdf:Description>
</rdf:RDF>
</MiriamAnnotation>
<ListOfProducts>
<Product metabolite="Metabolite_27" stoichiometry="1"/>
</ListOfProducts>
<ListOfConstants>
<Constant key="Parameter_1480" name="p14" value="1"/>
</ListOfConstants>
<KineticLaw function="Function_89">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_514">
<SourceParameter reference="Compartment_0"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_518">
<SourceParameter reference="ModelValue_88"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_50" name="cZTL_degr" reversible="false">
<ListOfSubstrates>
<Substrate metabolite="Metabolite_27" stoichiometry="1"/>
</ListOfSubstrates>
<ListOfConstants>
<Constant key="Parameter_1479" name="m20" value="1"/>
</ListOfConstants>
<KineticLaw function="Function_90">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_510">
<SourceParameter reference="Metabolite_27"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_503">
<SourceParameter reference="Compartment_0"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_512">
<SourceParameter reference="ModelValue_49"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_51" name="cZG_degr" reversible="false">
<ListOfSubstrates>
<Substrate metabolite="Metabolite_26" stoichiometry="1"/>
</ListOfSubstrates>
<ListOfConstants>
<Constant key="Parameter_1478" name="m21" value="1"/>
</ListOfConstants>
<KineticLaw function="Function_91">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_516">
<SourceParameter reference="Metabolite_26"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_520">
<SourceParameter reference="Compartment_0"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_507">
<SourceParameter reference="ModelValue_50"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_52" name="cG_cE3_assoc" reversible="false">
<ListOfSubstrates>
<Substrate metabolite="Metabolite_3" stoichiometry="1"/>
<Substrate metabolite="Metabolite_10" stoichiometry="1"/>
</ListOfSubstrates>
<ListOfProducts>
<Product metabolite="Metabolite_9" stoichiometry="1"/>
</ListOfProducts>
<ListOfConstants>
<Constant key="Parameter_1477" name="p17" value="1"/>
</ListOfConstants>
<KineticLaw function="Function_92">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_482">
<SourceParameter reference="Metabolite_3"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_523">
<SourceParameter reference="Metabolite_10"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_525">
<SourceParameter reference="Compartment_0"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_521">
<SourceParameter reference="ModelValue_91"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_53" name="cEG_degr" reversible="false">
<ListOfSubstrates>
<Substrate metabolite="Metabolite_9" stoichiometry="1"/>
</ListOfSubstrates>
<ListOfModifiers>
<Modifier metabolite="Metabolite_0" stoichiometry="1"/>
<Modifier metabolite="Metabolite_1" stoichiometry="1"/>
<Modifier metabolite="Metabolite_2" stoichiometry="1"/>
<Modifier metabolite="Metabolite_5" stoichiometry="1"/>
<Modifier metabolite="Metabolite_10" stoichiometry="1"/>
</ListOfModifiers>
<ListOfConstants>
<Constant key="Parameter_1476" name="m10" value="1"/>
<Constant key="Parameter_1475" name="m19" value="1"/>
<Constant key="Parameter_1474" name="m9" value="1"/>
<Constant key="Parameter_1473" name="p17" value="1"/>
<Constant key="Parameter_1472" name="p18" value="1"/>
<Constant key="Parameter_1471" name="p28" value="1"/>
<Constant key="Parameter_1470" name="p29" value="1"/>
<Constant key="Parameter_1469" name="p31" value="1"/>
</ListOfConstants>
<KineticLaw function="Function_93">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_527">
<SourceParameter reference="Metabolite_0"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_549">
<SourceParameter reference="Metabolite_1"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_545">
<SourceParameter reference="Metabolite_2"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_535">
<SourceParameter reference="Metabolite_5"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_522">
<SourceParameter reference="Metabolite_9"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_539">
<SourceParameter reference="Metabolite_10"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_551">
<SourceParameter reference="Compartment_0"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_547">
<SourceParameter reference="ModelValue_39"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_543">
<SourceParameter reference="ModelValue_48"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_526">
<SourceParameter reference="ModelValue_38"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_533">
<SourceParameter reference="ModelValue_91"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_529">
<SourceParameter reference="ModelValue_92"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_537">
<SourceParameter reference="ModelValue_102"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_541">
<SourceParameter reference="ModelValue_103"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_531">
<SourceParameter reference="ModelValue_105"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_54" name="cEC_form" reversible="false">
<ListOfProducts>
<Product metabolite="Metabolite_8" stoichiometry="1"/>
</ListOfProducts>
<ListOfModifiers>
<Modifier metabolite="Metabolite_1" stoichiometry="1"/>
<Modifier metabolite="Metabolite_2" stoichiometry="1"/>
<Modifier metabolite="Metabolite_5" stoichiometry="1"/>
<Modifier metabolite="Metabolite_6" stoichiometry="1"/>
<Modifier metabolite="Metabolite_13" stoichiometry="1"/>
</ListOfModifiers>
<ListOfConstants>
<Constant key="Parameter_1468" name="m36" value="1"/>
<Constant key="Parameter_1467" name="m37" value="1"/>
<Constant key="Parameter_1466" name="p21" value="1"/>
<Constant key="Parameter_1465" name="p25" value="1"/>
<Constant key="Parameter_1464" name="p26" value="1"/>
</ListOfConstants>
<KineticLaw function="Function_94">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_524">
<SourceParameter reference="Metabolite_1"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_556">
<SourceParameter reference="Metabolite_2"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_536">
<SourceParameter reference="Metabolite_5"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_540">
<SourceParameter reference="Metabolite_6"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_548">
<SourceParameter reference="Metabolite_13"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_558">
<SourceParameter reference="Compartment_0"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_554">
<SourceParameter reference="ModelValue_65"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_528">
<SourceParameter reference="ModelValue_66"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_532">
<SourceParameter reference="ModelValue_95"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_544">
<SourceParameter reference="ModelValue_99"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_552">
<SourceParameter reference="ModelValue_100"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_55" name="cEC_degr" reversible="false">
<MiriamAnnotation>
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
<rdf:Description rdf:about="#Reaction_55">
<dcterms:created>
<rdf:Description>
<dcterms:W3CDTF>2013-04-24T14:28:58Z</dcterms:W3CDTF>
</rdf:Description>
</dcterms:created>
</rdf:Description>
</rdf:RDF>
</MiriamAnnotation>
<ListOfSubstrates>
<Substrate metabolite="Metabolite_8" stoichiometry="1"/>
</ListOfSubstrates>
<ListOfModifiers>
<Modifier metabolite="Metabolite_1" stoichiometry="1"/>
<Modifier metabolite="Metabolite_2" stoichiometry="1"/>
<Modifier metabolite="Metabolite_5" stoichiometry="1"/>
<Modifier metabolite="Metabolite_9" stoichiometry="1"/>
<Modifier metabolite="Metabolite_10" stoichiometry="1"/>
</ListOfModifiers>
<ListOfConstants>
<Constant key="Parameter_1463" name="L" value="1"/>
<Constant key="Parameter_1462" name="d" value="1"/>
<Constant key="Parameter_1461" name="g7" value="1"/>
<Constant key="Parameter_1460" name="m10" value="1"/>
<Constant key="Parameter_1459" name="m19" value="1"/>
<Constant key="Parameter_1458" name="m32" value="1"/>
<Constant key="Parameter_1457" name="m36" value="1"/>
<Constant key="Parameter_1456" name="m37" value="1"/>
<Constant key="Parameter_1455" name="m9" value="1"/>
<Constant key="Parameter_1454" name="p17" value="1"/>
<Constant key="Parameter_1453" name="p18" value="1"/>
<Constant key="Parameter_1452" name="p24" value="1"/>
<Constant key="Parameter_1451" name="p28" value="1"/>
<Constant key="Parameter_1450" name="p29" value="1"/>
<Constant key="Parameter_1449" name="p31" value="1"/>
</ListOfConstants>
<KineticLaw function="Function_95">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_563">
<SourceParameter reference="ModelValue_109"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_542">
<SourceParameter reference="Metabolite_1"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_555">
<SourceParameter reference="Metabolite_2"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_575">
<SourceParameter reference="Metabolite_5"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_519">
<SourceParameter reference="Metabolite_8"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_579">
<SourceParameter reference="Metabolite_9"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_567">
<SourceParameter reference="Metabolite_10"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_587">
<SourceParameter reference="ModelValue_72"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_591">
<SourceParameter reference="Compartment_0"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_589">
<SourceParameter reference="ModelValue_20"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_583">
<SourceParameter reference="ModelValue_39"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_571">
<SourceParameter reference="ModelValue_48"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_550">
<SourceParameter reference="ModelValue_61"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_559">
<SourceParameter reference="ModelValue_65"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_534">
<SourceParameter reference="ModelValue_66"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_581">
<SourceParameter reference="ModelValue_38"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_573">
<SourceParameter reference="ModelValue_91"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_577">
<SourceParameter reference="ModelValue_92"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_561">
<SourceParameter reference="ModelValue_98"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_565">
<SourceParameter reference="ModelValue_102"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_569">
<SourceParameter reference="ModelValue_103"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_585">
<SourceParameter reference="ModelValue_105"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_56" name="Y_syn" reversible="false">
<MiriamAnnotation>
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
<rdf:Description rdf:about="#Reaction_56">
<dcterms:created>
<rdf:Description>
<dcterms:W3CDTF>2013-04-25T11:37:42Z</dcterms:W3CDTF>
</rdf:Description>
</dcterms:created>
</rdf:Description>
</rdf:RDF>
</MiriamAnnotation>
<ListOfProducts>
<Product metabolite="Metabolite_30" stoichiometry="1"/>
</ListOfProducts>
<ListOfConstants>
<Constant key="Parameter_1448" name="L" value="0.1"/>
<Constant key="Parameter_1447" name="ksY" value="0.1"/>
</ListOfConstants>
<KineticLaw function="Function_98">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_586">
<SourceParameter reference="ModelValue_109"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_570">
<SourceParameter reference="ModelValue_120"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_57" name="Y_deg" reversible="false">
<MiriamAnnotation>
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
<rdf:Description rdf:about="#Reaction_57">
<dcterms:created>
<rdf:Description>
<dcterms:W3CDTF>2013-04-25T11:51:32Z</dcterms:W3CDTF>
</rdf:Description>
</dcterms:created>
</rdf:Description>
</rdf:RDF>
</MiriamAnnotation>
<ListOfSubstrates>
<Substrate metabolite="Metabolite_30" stoichiometry="1"/>
</ListOfSubstrates>
<ListOfConstants>
<Constant key="Parameter_1446" name="L" value="0.1"/>
<Constant key="Parameter_1445" name="kdY" value="0.1"/>
</ListOfConstants>
<KineticLaw function="Function_99">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_562">
<SourceParameter reference="ModelValue_109"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_530">
<SourceParameter reference="Metabolite_30"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_593">
<SourceParameter reference="ModelValue_121"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_58" name="T_syn" reversible="false">
<MiriamAnnotation>
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
<rdf:Description rdf:about="#Reaction_58">
<dcterms:created>
<rdf:Description>
<dcterms:W3CDTF>2013-04-25T11:51:55Z</dcterms:W3CDTF>
</rdf:Description>
</dcterms:created>
</rdf:Description>
</rdf:RDF>
</MiriamAnnotation>
<ListOfProducts>
<Product metabolite="Metabolite_28" stoichiometry="1"/>
</ListOfProducts>
<ListOfModifiers>
<Modifier metabolite="Metabolite_12" stoichiometry="1"/>
<Modifier metabolite="Metabolite_16" stoichiometry="1"/>
</ListOfModifiers>
<ListOfConstants>
<Constant key="Parameter_1444" name="L" value="0.1"/>
<Constant key="Parameter_1443" name="ksT1" value="0.1"/>
<Constant key="Parameter_1442" name="ksT2" value="0.1"/>
<Constant key="Parameter_1441" name="KsT2" value="0.1"/>
</ListOfConstants>
<KineticLaw function="Function_100">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_594">
<SourceParameter reference="ModelValue_109"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_578">
<SourceParameter reference="ModelValue_129"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_596">
<SourceParameter reference="ModelValue_130"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_598">
<SourceParameter reference="Metabolite_12"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_600">
<SourceParameter reference="Metabolite_16"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_602">
<SourceParameter reference="ModelValue_134"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_59" name="T_deg" reversible="false">
<MiriamAnnotation>
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
<rdf:Description rdf:about="#Reaction_59">
<dcterms:created>
<rdf:Description>
<dcterms:W3CDTF>2013-04-25T11:52:50Z</dcterms:W3CDTF>
</rdf:Description>
</dcterms:created>
</rdf:Description>
</rdf:RDF>
</MiriamAnnotation>
<ListOfSubstrates>
<Substrate metabolite="Metabolite_28" stoichiometry="1"/>
</ListOfSubstrates>
<ListOfConstants>
<Constant key="Parameter_1440" name="L" value="0.1"/>
<Constant key="Parameter_1439" name="kdT1" value="0.1"/>
<Constant key="Parameter_1438" name="kdT2" value="0.1"/>
<Constant key="Parameter_1437" name="KdT2" value="0.1"/>
</ListOfConstants>
<KineticLaw function="Function_101">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_603">
<SourceParameter reference="ModelValue_109"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_599">
<SourceParameter reference="ModelValue_131"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_595">
<SourceParameter reference="ModelValue_132"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_604">
<SourceParameter reference="Metabolite_28"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_606">
<SourceParameter reference="ModelValue_133"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_60" name="X_syn" reversible="false">
<MiriamAnnotation>
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
<rdf:Description rdf:about="#Reaction_60">
<dcterms:created>
<rdf:Description>
<dcterms:W3CDTF>2013-04-25T11:53:33Z</dcterms:W3CDTF>
</rdf:Description>
</dcterms:created>
</rdf:Description>
</rdf:RDF>
</MiriamAnnotation>
<ListOfProducts>
<Product metabolite="Metabolite_29" stoichiometry="1"/>
</ListOfProducts>
<ListOfModifiers>
<Modifier metabolite="Metabolite_31" stoichiometry="1"/>
</ListOfModifiers>
<ListOfConstants>
<Constant key="Parameter_1436" name="ksX" value="0.1"/>
</ListOfConstants>
<KineticLaw function="Function_102">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_607">
<SourceParameter reference="ModelValue_127"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_590">
<SourceParameter reference="Metabolite_31"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_61" name="X_deg" reversible="false">
<MiriamAnnotation>
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
<rdf:Description rdf:about="#Reaction_61">
<dcterms:created>
<rdf:Description>
<dcterms:W3CDTF>2013-04-25T11:54:02Z</dcterms:W3CDTF>
</rdf:Description>
</dcterms:created>
</rdf:Description>
</rdf:RDF>
</MiriamAnnotation>
<ListOfSubstrates>
<Substrate metabolite="Metabolite_29" stoichiometry="1"/>
</ListOfSubstrates>
<ListOfModifiers>
<Modifier metabolite="Metabolite_28" stoichiometry="1"/>
</ListOfModifiers>
<ListOfConstants>
<Constant key="Parameter_1435" name="kdX" value="0.1"/>
</ListOfConstants>
<KineticLaw function="Function_103">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_597">
<SourceParameter reference="ModelValue_128"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_601">
<SourceParameter reference="Metabolite_29"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_609">
<SourceParameter reference="Metabolite_28"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_62" name="S_syn" reversible="false">
<MiriamAnnotation>
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
<rdf:Description rdf:about="#Reaction_62">
<dcterms:created>
<rdf:Description>
<dcterms:W3CDTF>2013-04-25T11:54:28Z</dcterms:W3CDTF>
</rdf:Description>
</dcterms:created>
</rdf:Description>
</rdf:RDF>
</MiriamAnnotation>
<ListOfProducts>
<Product metabolite="Metabolite_31" stoichiometry="1"/>
</ListOfProducts>
<ListOfModifiers>
<Modifier metabolite="Metabolite_30" stoichiometry="1"/>
</ListOfModifiers>
<ListOfConstants>
<Constant key="Parameter_1434" name="ksS" value="0.1"/>
<Constant key="Parameter_1433" name="L" value="0.1"/>
<Constant key="Parameter_1432" name="KsS" value="0.1"/>
</ListOfConstants>
<KineticLaw function="Function_104">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_610">
<SourceParameter reference="ModelValue_123"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_605">
<SourceParameter reference="ModelValue_109"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_612">
<SourceParameter reference="Metabolite_30"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_614">
<SourceParameter reference="ModelValue_122"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
<Reaction key="Reaction_63" name="S_deg" reversible="false">
<MiriamAnnotation>
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
<rdf:Description rdf:about="#Reaction_63">
<dcterms:created>
<rdf:Description>
<dcterms:W3CDTF>2013-04-25T11:55:03Z</dcterms:W3CDTF>
</rdf:Description>
</dcterms:created>
</rdf:Description>
</rdf:RDF>
</MiriamAnnotation>
<ListOfSubstrates>
<Substrate metabolite="Metabolite_31" stoichiometry="1"/>
</ListOfSubstrates>
<ListOfModifiers>
<Modifier metabolite="Metabolite_29" stoichiometry="1"/>
</ListOfModifiers>
<ListOfConstants>
<Constant key="Parameter_1431" name="L" value="0.1"/>
<Constant key="Parameter_1430" name="kdS" value="0.1"/>
<Constant key="Parameter_1429" name="KdSX" value="0.1"/>
<Constant key="Parameter_1428" name="KdS" value="0.1"/>
</ListOfConstants>
<KineticLaw function="Function_105">
<ListOfCallParameters>
<CallParameter functionParameter="FunctionParameter_615">
<SourceParameter reference="ModelValue_109"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_611">
<SourceParameter reference="ModelValue_124"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_616">
<SourceParameter reference="Metabolite_29"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_618">
<SourceParameter reference="ModelValue_126"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_620">
<SourceParameter reference="Metabolite_31"/>
</CallParameter>
<CallParameter functionParameter="FunctionParameter_622">
<SourceParameter reference="ModelValue_125"/>
</CallParameter>
</ListOfCallParameters>
</KineticLaw>
</Reaction>
</ListOfReactions>
<StateTemplate>
<StateTemplateVariable objectReference="Model_1"/>
<StateTemplateVariable objectReference="Metabolite_3"/>
<StateTemplateVariable objectReference="Metabolite_10"/>
<StateTemplateVariable objectReference="Metabolite_2"/>
<StateTemplateVariable objectReference="Metabolite_27"/>
<StateTemplateVariable objectReference="Metabolite_0"/>
<StateTemplateVariable objectReference="Metabolite_6"/>
<StateTemplateVariable objectReference="Metabolite_7"/>
<StateTemplateVariable objectReference="Metabolite_8"/>
<StateTemplateVariable objectReference="Metabolite_11"/>
<StateTemplateVariable objectReference="Metabolite_12"/>
<StateTemplateVariable objectReference="Metabolite_13"/>
<StateTemplateVariable objectReference="Metabolite_14"/>
<StateTemplateVariable objectReference="Metabolite_15"/>
<StateTemplateVariable objectReference="Metabolite_16"/>
<StateTemplateVariable objectReference="Metabolite_17"/>
<StateTemplateVariable objectReference="Metabolite_18"/>
<StateTemplateVariable objectReference="Metabolite_19"/>
<StateTemplateVariable objectReference="Metabolite_20"/>
<StateTemplateVariable objectReference="Metabolite_21"/>
<StateTemplateVariable objectReference="Metabolite_22"/>
<StateTemplateVariable objectReference="Metabolite_23"/>
<StateTemplateVariable objectReference="Metabolite_24"/>
<StateTemplateVariable objectReference="Metabolite_25"/>
<StateTemplateVariable objectReference="Metabolite_4"/>
<StateTemplateVariable objectReference="Metabolite_28"/>
<StateTemplateVariable objectReference="Metabolite_29"/>
<StateTemplateVariable objectReference="Metabolite_30"/>
<StateTemplateVariable objectReference="Metabolite_31"/>
<StateTemplateVariable objectReference="Metabolite_5"/>
<StateTemplateVariable objectReference="Metabolite_1"/>
<StateTemplateVariable objectReference="Metabolite_9"/>
<StateTemplateVariable objectReference="Metabolite_26"/>
<StateTemplateVariable objectReference="ModelValue_109"/>
<StateTemplateVariable objectReference="ModelValue_110"/>
<StateTemplateVariable objectReference="ModelValue_0"/>
<StateTemplateVariable objectReference="ModelValue_1"/>
<StateTemplateVariable objectReference="ModelValue_2"/>
<StateTemplateVariable objectReference="ModelValue_3"/>
<StateTemplateVariable objectReference="ModelValue_4"/>
<StateTemplateVariable objectReference="ModelValue_5"/>
<StateTemplateVariable objectReference="ModelValue_6"/>
<StateTemplateVariable objectReference="ModelValue_7"/>
<StateTemplateVariable objectReference="ModelValue_8"/>
<StateTemplateVariable objectReference="ModelValue_9"/>
<StateTemplateVariable objectReference="ModelValue_10"/>
<StateTemplateVariable objectReference="ModelValue_11"/>
<StateTemplateVariable objectReference="ModelValue_12"/>
<StateTemplateVariable objectReference="ModelValue_13"/>
<StateTemplateVariable objectReference="ModelValue_14"/>
<StateTemplateVariable objectReference="ModelValue_15"/>
<StateTemplateVariable objectReference="ModelValue_16"/>
<StateTemplateVariable objectReference="ModelValue_17"/>
<StateTemplateVariable objectReference="ModelValue_18"/>
<StateTemplateVariable objectReference="ModelValue_19"/>
<StateTemplateVariable objectReference="ModelValue_20"/>
<StateTemplateVariable objectReference="ModelValue_21"/>
<StateTemplateVariable objectReference="ModelValue_22"/>
<StateTemplateVariable objectReference="ModelValue_23"/>
<StateTemplateVariable objectReference="ModelValue_24"/>
<StateTemplateVariable objectReference="ModelValue_25"/>
<StateTemplateVariable objectReference="ModelValue_26"/>
<StateTemplateVariable objectReference="ModelValue_27"/>
<StateTemplateVariable objectReference="ModelValue_28"/>
<StateTemplateVariable objectReference="ModelValue_29"/>
<StateTemplateVariable objectReference="ModelValue_30"/>
<StateTemplateVariable objectReference="ModelValue_31"/>
<StateTemplateVariable objectReference="ModelValue_32"/>
<StateTemplateVariable objectReference="ModelValue_33"/>
<StateTemplateVariable objectReference="ModelValue_34"/>
<StateTemplateVariable objectReference="ModelValue_35"/>
<StateTemplateVariable objectReference="ModelValue_36"/>
<StateTemplateVariable objectReference="ModelValue_37"/>
<StateTemplateVariable objectReference="ModelValue_38"/>
<StateTemplateVariable objectReference="ModelValue_39"/>
<StateTemplateVariable objectReference="ModelValue_40"/>
<StateTemplateVariable objectReference="ModelValue_41"/>
<StateTemplateVariable objectReference="ModelValue_42"/>
<StateTemplateVariable objectReference="ModelValue_43"/>
<StateTemplateVariable objectReference="ModelValue_44"/>
<StateTemplateVariable objectReference="ModelValue_45"/>
<StateTemplateVariable objectReference="ModelValue_46"/>
<StateTemplateVariable objectReference="ModelValue_47"/>
<StateTemplateVariable objectReference="ModelValue_48"/>
<StateTemplateVariable objectReference="ModelValue_49"/>
<StateTemplateVariable objectReference="ModelValue_50"/>
<StateTemplateVariable objectReference="ModelValue_51"/>
<StateTemplateVariable objectReference="ModelValue_52"/>
<StateTemplateVariable objectReference="ModelValue_53"/>
<StateTemplateVariable objectReference="ModelValue_54"/>
<StateTemplateVariable objectReference="ModelValue_55"/>
<StateTemplateVariable objectReference="ModelValue_56"/>
<StateTemplateVariable objectReference="ModelValue_57"/>
<StateTemplateVariable objectReference="ModelValue_58"/>
<StateTemplateVariable objectReference="ModelValue_59"/>
<StateTemplateVariable objectReference="ModelValue_60"/>
<StateTemplateVariable objectReference="ModelValue_61"/>
<StateTemplateVariable objectReference="ModelValue_62"/>
<StateTemplateVariable objectReference="ModelValue_63"/>
<StateTemplateVariable objectReference="ModelValue_64"/>
<StateTemplateVariable objectReference="ModelValue_65"/>
<StateTemplateVariable objectReference="ModelValue_66"/>
<StateTemplateVariable objectReference="ModelValue_67"/>
<StateTemplateVariable objectReference="ModelValue_68"/>
<StateTemplateVariable objectReference="ModelValue_69"/>
<StateTemplateVariable objectReference="ModelValue_70"/>
<StateTemplateVariable objectReference="ModelValue_71"/>
<StateTemplateVariable objectReference="ModelValue_72"/>
<StateTemplateVariable objectReference="ModelValue_73"/>
<StateTemplateVariable objectReference="ModelValue_74"/>
<StateTemplateVariable objectReference="ModelValue_75"/>
<StateTemplateVariable objectReference="ModelValue_76"/>
<StateTemplateVariable objectReference="ModelValue_77"/>
<StateTemplateVariable objectReference="ModelValue_78"/>
<StateTemplateVariable objectReference="ModelValue_79"/>
<StateTemplateVariable objectReference="ModelValue_80"/>
<StateTemplateVariable objectReference="ModelValue_81"/>
<StateTemplateVariable objectReference="ModelValue_82"/>
<StateTemplateVariable objectReference="ModelValue_83"/>
<StateTemplateVariable objectReference="ModelValue_84"/>
<StateTemplateVariable objectReference="ModelValue_85"/>
<StateTemplateVariable objectReference="ModelValue_86"/>
<StateTemplateVariable objectReference="ModelValue_87"/>
<StateTemplateVariable objectReference="ModelValue_88"/>
<StateTemplateVariable objectReference="ModelValue_89"/>
<StateTemplateVariable objectReference="ModelValue_90"/>
<StateTemplateVariable objectReference="ModelValue_91"/>
<StateTemplateVariable objectReference="ModelValue_92"/>
<StateTemplateVariable objectReference="ModelValue_93"/>
<StateTemplateVariable objectReference="ModelValue_94"/>
<StateTemplateVariable objectReference="ModelValue_95"/>
<StateTemplateVariable objectReference="ModelValue_96"/>
<StateTemplateVariable objectReference="ModelValue_97"/>
<StateTemplateVariable objectReference="ModelValue_98"/>
<StateTemplateVariable objectReference="ModelValue_99"/>
<StateTemplateVariable objectReference="ModelValue_100"/>
<StateTemplateVariable objectReference="ModelValue_101"/>
<StateTemplateVariable objectReference="ModelValue_102"/>
<StateTemplateVariable objectReference="ModelValue_103"/>
<StateTemplateVariable objectReference="ModelValue_104"/>
<StateTemplateVariable objectReference="ModelValue_105"/>
<StateTemplateVariable objectReference="ModelValue_106"/>
<StateTemplateVariable objectReference="ModelValue_107"/>
<StateTemplateVariable objectReference="ModelValue_108"/>
<StateTemplateVariable objectReference="ModelValue_111"/>
<StateTemplateVariable objectReference="ModelValue_112"/>
<StateTemplateVariable objectReference="ModelValue_113"/>
<StateTemplateVariable objectReference="ModelValue_114"/>
<StateTemplateVariable objectReference="ModelValue_115"/>
<StateTemplateVariable objectReference="ModelValue_116"/>
<StateTemplateVariable objectReference="ModelValue_117"/>
<StateTemplateVariable objectReference="ModelValue_118"/>
<StateTemplateVariable objectReference="ModelValue_119"/>
<StateTemplateVariable objectReference="ModelValue_120"/>
<StateTemplateVariable objectReference="ModelValue_121"/>
<StateTemplateVariable objectReference="ModelValue_122"/>
<StateTemplateVariable objectReference="ModelValue_123"/>
<StateTemplateVariable objectReference="ModelValue_124"/>
<StateTemplateVariable objectReference="ModelValue_125"/>
<StateTemplateVariable objectReference="ModelValue_126"/>
<StateTemplateVariable objectReference="ModelValue_127"/>
<StateTemplateVariable objectReference="ModelValue_128"/>
<StateTemplateVariable objectReference="ModelValue_129"/>
<StateTemplateVariable objectReference="ModelValue_130"/>
<StateTemplateVariable objectReference="ModelValue_131"/>
<StateTemplateVariable objectReference="ModelValue_132"/>
<StateTemplateVariable objectReference="ModelValue_133"/>
<StateTemplateVariable objectReference="ModelValue_134"/>
<StateTemplateVariable objectReference="Compartment_0"/>
</StateTemplate>
<InitialState type="initialState">
2400 65324265133528.32 9911651834124.75 391246231423052.8 152236639144403.2 196851979912041.6 92263235785425.16 39189504281894.11 35590523245703.44 47213677589683.23 437156593092850.1 263452139713777.4 39189504281894.09 707461278732246.3 73699682713879.91 45053652110811.58 76133716197368.8 575671718988327.1 106571592817825.2 356954012847715.3 16135407251316.98 43675424004948.63 18916658883604.11 42499415063328.64 121295279927074.8 192792320668685.8 1296444371266510 3.384621144673284e+016 308020469350604.1 13048015303748.22 154672825606042.6 1515522335931.72 51092797064150.48 0.5 0.5 2.6 0.64 0.29 0.07000000000000001 0.23 20 0.2 0.5 0.2 0.4 0.6 12.5 1.3 0.1 0.1 0.01 0.6 0.01 0.15 0.3 0.6 0.01 0.3 0.5 0.7 0.2 1 0.004 0.4 0.3 0.54 0.24 0.2 0.2 0.3 0.3 0.7 0.4 1.1 1 1 1 0.32 0.4 0.7 0.5 0.5 3.4 0.2 0.6 0.08 0.1 1.8 0.1 1.8 0.5 0.1 20 5 3 0.3 0.2 13 0.6 0.3 0.1 0.8 0.5 0.3 2 2 2 2 2 2 0.13 0.27 0.1 0.5600000000000001 4 0.6 0.3 0.6 0.8 0.54 0.51 3.4 0.1 0.14 3 0.62 4.8 4 1 0.1 1 0.5 0.37 10 8 0.3 0.8 2 0.1 0.9 0.1 1.2 1.56 2.8 1 1 1 0 24 1 0 0.05 12 1 0.02 100 2 20 0.5 100 40 100 7.5 14 14.5 0.06 0.003 0.4 1
</InitialState>
</Model>
<ListOfTasks>
<Task key="Task_12" name="Steady-State" type="steadyState" scheduled="false" updateModel="false">
<Report reference="Report_8" target="" append="1"/>
<Problem>
<Parameter name="JacobianRequested" type="bool" value="1"/>
<Parameter name="StabilityAnalysisRequested" type="bool" value="1"/>
</Problem>
<Method name="Enhanced Newton" type="EnhancedNewton">
<Parameter name="Resolution" type="unsignedFloat" value="1e-009"/>
<Parameter name="Derivation Factor" type="unsignedFloat" value="0.001"/>
<Parameter name="Use Newton" type="bool" value="1"/>
<Parameter name="Use Integration" type="bool" value="1"/>
<Parameter name="Use Back Integration" type="bool" value="1"/>
<Parameter name="Accept Negative Concentrations" type="bool" value="0"/>
<Parameter name="Iteration Limit" type="unsignedInteger" value="50"/>
<Parameter name="Maximum duration for forward integration" type="unsignedFloat" value="1000000000"/>
<Parameter name="Maximum duration for backward integration" type="unsignedFloat" value="1000000"/>
</Method>
</Task>
<Task key="Task_13" name="Time-Course" type="timeCourse" scheduled="false" updateModel="false">
<Problem>
<Parameter name="StepNumber" type="unsignedInteger" value="2400"/>
<Parameter name="StepSize" type="float" value="0.1"/>
<Parameter name="Duration" type="float" value="240"/>
<Parameter name="TimeSeriesRequested" type="bool" value="0"/>
<Parameter name="OutputStartTime" type="float" value="216"/>
<Parameter name="Output Event" type="bool" value="0"/>
</Problem>
<Method name="Deterministic (LSODA)" type="Deterministic(LSODA)">
<Parameter name="Integrate Reduced Model" type="bool" value="0"/>
<Parameter name="Relative Tolerance" type="unsignedFloat" value="1e-006"/>
<Parameter name="Absolute Tolerance" type="unsignedFloat" value="1e-012"/>
<Parameter name="Max Internal Steps" type="unsignedInteger" value="10000"/>
</Method>
</Task>
<Task key="Task_14" name="Scan" type="scan" scheduled="false" updateModel="false">
<Problem>
<Parameter name="Subtask" type="unsignedInteger" value="1"/>
<ParameterGroup name="ScanItems">
</ParameterGroup>
<Parameter name="Output in subtask" type="bool" value="1"/>
<Parameter name="Adjust initial conditions" type="bool" value="0"/>
</Problem>
<Method name="Scan Framework" type="ScanFramework">
</Method>
</Task>
<Task key="Task_15" name="Elementary Flux Modes" type="fluxMode" scheduled="false" updateModel="false">
<Report reference="Report_9" target="" append="1"/>
<Problem>
</Problem>
<Method name="EFM Algorithm" type="EFMAlgorithm">
</Method>
</Task>
<Task key="Task_16" name="Optimization" type="optimization" scheduled="false" updateModel="false">
<Report reference="Report_10" target="" append="1"/>
<Problem>
<Parameter name="Subtask" type="cn" value="CN=Root,Vector=TaskList[Steady-State]"/>
<ParameterText name="ObjectiveExpression" type="expression">
</ParameterText>
<Parameter name="Maximize" type="bool" value="0"/>
<Parameter name="Randomize Start Values" type="bool" value="0"/>
<Parameter name="Calculate Statistics" type="bool" value="1"/>
<ParameterGroup name="OptimizationItemList">
</ParameterGroup>
<ParameterGroup name="OptimizationConstraintList">
</ParameterGroup>
</Problem>
<Method name="Random Search" type="RandomSearch">
<Parameter name="Number of Iterations" type="unsignedInteger" value="100000"/>
<Parameter name="Random Number Generator" type="unsignedInteger" value="1"/>
<Parameter name="Seed" type="unsignedInteger" value="0"/>
</Method>
</Task>
<Task key="Task_17" name="Parameter Estimation" type="parameterFitting" scheduled="false" updateModel="false">
<Report reference="Report_11" target="" append="1"/>
<Problem>
<Parameter name="Maximize" type="bool" value="0"/>
<Parameter name="Randomize Start Values" type="bool" value="0"/>
<Parameter name="Calculate Statistics" type="bool" value="1"/>
<ParameterGroup name="OptimizationItemList">
</ParameterGroup>
<ParameterGroup name="OptimizationConstraintList">
</ParameterGroup>
<Parameter name="Steady-State" type="cn" value="CN=Root,Vector=TaskList[Steady-State]"/>
<Parameter name="Time-Course" type="cn" value="CN=Root,Vector=TaskList[Time-Course]"/>
<ParameterGroup name="Experiment Set">
</ParameterGroup>
</Problem>
<Method name="Evolutionary Programming" type="EvolutionaryProgram">
<Parameter name="Number of Generations" type="unsignedInteger" value="200"/>
<Parameter name="Population Size" type="unsignedInteger" value="20"/>
<Parameter name="Random Number Generator" type="unsignedInteger" value="1"/>
<Parameter name="Seed" type="unsignedInteger" value="0"/>
</Method>
</Task>
<Task key="Task_18" name="Metabolic Control Analysis" type="metabolicControlAnalysis" scheduled="false" updateModel="false">
<Report reference="Report_12" target="" append="1"/>
<Problem>
<Parameter name="Steady-State" type="key" value="Task_12"/>
</Problem>
<Method name="MCA Method (Reder)" type="MCAMethod(Reder)">
<Parameter name="Modulation Factor" type="unsignedFloat" value="1e-009"/>
</Method>
</Task>
<Task key="Task_19" name="Lyapunov Exponents" type="lyapunovExponents" scheduled="false" updateModel="false">
<Report reference="Report_13" target="" append="1"/>
<Problem>
<Parameter name="ExponentNumber" type="unsignedInteger" value="3"/>
<Parameter name="DivergenceRequested" type="bool" value="1"/>
<Parameter name="TransientTime" type="float" value="0"/>
</Problem>
<Method name="Wolf Method" type="WolfMethod">
<Parameter name="Orthonormalization Interval" type="unsignedFloat" value="1"/>
<Parameter name="Overall time" type="unsignedFloat" value="1000"/>
<Parameter name="Relative Tolerance" type="unsignedFloat" value="1e-006"/>
<Parameter name="Absolute Tolerance" type="unsignedFloat" value="1e-012"/>
<Parameter name="Max Internal Steps" type="unsignedInteger" value="10000"/>
</Method>
</Task>
<Task key="Task_20" name="Time Scale Separation Analysis" type="timeScaleSeparationAnalysis" scheduled="false" updateModel="false">
<Report reference="Report_14" target="" append="1"/>
<Problem>
<Parameter name="StepNumber" type="unsignedInteger" value="100"/>
<Parameter name="StepSize" type="float" value="0.01"/>
<Parameter name="Duration" type="float" value="1"/>
<Parameter name="TimeSeriesRequested" type="bool" value="1"/>
<Parameter name="OutputStartTime" type="float" value="0"/>
</Problem>
<Method name="ILDM (LSODA,Deuflhard)" type="TimeScaleSeparation(ILDM,Deuflhard)">
<Parameter name="Deuflhard Tolerance" type="unsignedFloat" value="1e-006"/>
</Method>
</Task>
<Task key="Task_21" name="Sensitivities" type="sensitivities" scheduled="false" updateModel="false">
<Report reference="Report_15" target="" append="1"/>
<Problem>
<Parameter name="SubtaskType" type="unsignedInteger" value="1"/>
<ParameterGroup name="TargetFunctions">
<Parameter name="SingleObject" type="cn" value=""/>
<Parameter name="ObjectListType" type="unsignedInteger" value="7"/>
</ParameterGroup>
<ParameterGroup name="ListOfVariables">
<ParameterGroup name="Variables">
<Parameter name="SingleObject" type="cn" value=""/>
<Parameter name="ObjectListType" type="unsignedInteger" value="41"/>
</ParameterGroup>
</ParameterGroup>
</Problem>
<Method name="Sensitivities Method" type="SensitivitiesMethod">
<Parameter name="Delta factor" type="unsignedFloat" value="0.001"/>
<Parameter name="Delta minimum" type="unsignedFloat" value="1e-012"/>
</Method>
</Task>
<Task key="Task_22" name="Moieties" type="moieties" scheduled="false" updateModel="false">
<Problem>
</Problem>
<Method name="Householder Reduction" type="Householder">
</Method>
</Task>
</ListOfTasks>
<ListOfReports>
<Report key="Report_8" name="Steady-State" taskType="steadyState" separator="	" precision="6">
<Comment>
Automatically generated report.
</Comment>
<Footer>
<Object cn="CN=Root,Vector=TaskList[Steady-State]"/>
</Footer>
</Report>
<Report key="Report_9" name="Elementary Flux Modes" taskType="fluxMode" separator="	" precision="6">
<Comment>
Automatically generated report.
</Comment>
<Footer>
<Object cn="CN=Root,Vector=TaskList[Elementary Flux Modes],Object=Result"/>
</Footer>
</Report>
<Report key="Report_10" name="Optimization" taskType="optimization" separator="	" precision="6">
<Comment>
Automatically generated report.
</Comment>
<Header>
<Object cn="CN=Root,Vector=TaskList[Optimization],Object=Description"/>
<Object cn="String=\[Function Evaluations\]"/>
<Object cn="Separator=	"/>
<Object cn="String=\[Best Value\]"/>
<Object cn="Separator=	"/>
<Object cn="String=\[Best Parameters\]"/>
</Header>
<Body>
<Object cn="CN=Root,Vector=TaskList[Optimization],Problem=Optimization,Reference=Function Evaluations"/>
<Object cn="Separator=	"/>
<Object cn="CN=Root,Vector=TaskList[Optimization],Problem=Optimization,Reference=Best Value"/>
<Object cn="Separator=	"/>
<Object cn="CN=Root,Vector=TaskList[Optimization],Problem=Optimization,Reference=Best Parameters"/>
</Body>
<Footer>
<Object cn="String=
"/>
<Object cn="CN=Root,Vector=TaskList[Optimization],Object=Result"/>
</Footer>
</Report>
<Report key="Report_11" name="Parameter Estimation" taskType="parameterFitting" separator="	" precision="6">
<Comment>
Automatically generated report.
</Comment>
<Header>
<Object cn="CN=Root,Vector=TaskList[Parameter Estimation],Object=Description"/>
<Object cn="String=\[Function Evaluations\]"/>
<Object cn="Separator=	"/>
<Object cn="String=\[Best Value\]"/>
<Object cn="Separator=	"/>
<Object cn="String=\[Best Parameters\]"/>
</Header>
<Body>
<Object cn="CN=Root,Vector=TaskList[Parameter Estimation],Problem=Parameter Estimation,Reference=Function Evaluations"/>
<Object cn="Separator=	"/>
<Object cn="CN=Root,Vector=TaskList[Parameter Estimation],Problem=Parameter Estimation,Reference=Best Value"/>
<Object cn="Separator=	"/>
<Object cn="CN=Root,Vector=TaskList[Parameter Estimation],Problem=Parameter Estimation,Reference=Best Parameters"/>
</Body>
<Footer>
<Object cn="String=
"/>
<Object cn="CN=Root,Vector=TaskList[Parameter Estimation],Object=Result"/>
</Footer>
</Report>
<Report key="Report_12" name="Metabolic Control Analysis" taskType="metabolicControlAnalysis" separator="	" precision="6">
<Comment>
Automatically generated report.
</Comment>
<Header>
<Object cn="CN=Root,Vector=TaskList[Metabolic Control Analysis],Object=Description"/>
</Header>
<Footer>
<Object cn="String=
"/>
<Object cn="CN=Root,Vector=TaskList[Metabolic Control Analysis],Object=Result"/>
</Footer>
</Report>
<Report key="Report_13" name="Lyapunov Exponents" taskType="lyapunovExponents" separator="	" precision="6">
<Comment>
Automatically generated report.
</Comment>
<Header>
<Object cn="CN=Root,Vector=TaskList[Lyapunov Exponents],Object=Description"/>
</Header>
<Footer>
<Object cn="String=
"/>
<Object cn="CN=Root,Vector=TaskList[Lyapunov Exponents],Object=Result"/>
</Footer>
</Report>
<Report key="Report_14" name="Time Scale Separation Analysis" taskType="timeScaleSeparationAnalysis" separator="	" precision="6">
<Comment>
Automatically generated report.
</Comment>
<Header>
<Object cn="CN=Root,Vector=TaskList[Time Scale Separation Analysis],Object=Description"/>
</Header>
<Footer>
<Object cn="String=
"/>
<Object cn="CN=Root,Vector=TaskList[Time Scale Separation Analysis],Object=Result"/>
</Footer>
</Report>
<Report key="Report_15" name="Sensitivities" taskType="sensitivities" separator="	" precision="6">
<Comment>
Automatically generated report.
</Comment>
<Header>
<Object cn="CN=Root,Vector=TaskList[Sensitivities],Object=Description"/>
</Header>
<Footer>
<Object cn="String=
"/>
<Object cn="CN=Root,Vector=TaskList[Sensitivities],Object=Result"/>
</Footer>
</Report>
</ListOfReports>
<ListOfPlots>
<PlotSpecification name="plot_1" type="Plot2D" active="1">
<Parameter name="log X" type="bool" value="0"/>
<Parameter name="log Y" type="bool" value="0"/>
<ListOfPlotItems>
<PlotItem name="[cLUX_m]|Time" type="Curve2D">
<Parameter name="Line type" type="unsignedInteger" value="0"/>
<Parameter name="Recording Activity" type="string" value="during"/>
<ListOfChannels>
<ChannelSpec cn="CN=Root,Model=Starch Model 2,Reference=Time"/>
<ChannelSpec cn="CN=Root,Model=Starch Model 2,Vector=Compartments[def],Vector=Metabolites[cLUX_m],Reference=Concentration"/>
</ListOfChannels>
</PlotItem>
<PlotItem name="[cL_m]|Time" type="Curve2D">
<Parameter name="Line type" type="unsignedInteger" value="0"/>
<Parameter name="Recording Activity" type="string" value="during"/>
<ListOfChannels>
<ChannelSpec cn="CN=Root,Model=Starch Model 2,Reference=Time"/>
<ChannelSpec cn="CN=Root,Model=Starch Model 2,Vector=Compartments[def],Vector=Metabolites[cL_m],Reference=Concentration"/>
</ListOfChannels>
</PlotItem>
</ListOfPlotItems>
</PlotSpecification>
<PlotSpecification name="Concentrations, Volumes, and Global Quantity Values" type="Plot2D" active="1">
<Parameter name="log X" type="bool" value="0"/>
<Parameter name="log Y" type="bool" value="0"/>
<ListOfPlotItems>
<PlotItem name="[cCOP1c]" type="Curve2D">
<Parameter name="Line type" type="unsignedInteger" value="0"/>
<Parameter name="Recording Activity" type="string" value="during"/>
<ListOfChannels>
<ChannelSpec cn="CN=Root,Model=Starch Model 2,Reference=Time"/>
<ChannelSpec cn="CN=Root,Model=Starch Model 2,Vector=Compartments[def],Vector=Metabolites[cCOP1c],Reference=Concentration"/>
</ListOfChannels>
</PlotItem>
<PlotItem name="[cCOP1d]" type="Curve2D">
<Parameter name="Line type" type="unsignedInteger" value="0"/>
<Parameter name="Recording Activity" type="string" value="during"/>
<ListOfChannels>
<ChannelSpec cn="CN=Root,Model=Starch Model 2,Reference=Time"/>
<ChannelSpec cn="CN=Root,Model=Starch Model 2,Vector=Compartments[def],Vector=Metabolites[cCOP1d],Reference=Concentration"/>
</ListOfChannels>
</PlotItem>
<PlotItem name="[cCOP1n]" type="Curve2D">
<Parameter name="Line type" type="unsignedInteger" value="0"/>
<Parameter name="Recording Activity" type="string" value="during"/>
<ListOfChannels>
<ChannelSpec cn="CN=Root,Model=Starch Model 2,Reference=Time"/>
<ChannelSpec cn="CN=Root,Model=Starch Model 2,Vector=Compartments[def],Vector=Metabolites[cCOP1n],Reference=Concentration"/>
</ListOfChannels>
</PlotItem>
<PlotItem name="[cE3]" type="Curve2D">
<Parameter name="Line type" type="unsignedInteger" value="0"/>
<Parameter name="Recording Activity" type="string" value="during"/>
<ListOfChannels>
<ChannelSpec cn="CN=Root,Model=Starch Model 2,Reference=Time"/>
<ChannelSpec cn="CN=Root,Model=Starch Model 2,Vector=Compartments[def],Vector=Metabolites[cE3],Reference=Concentration"/>
</ListOfChannels>
</PlotItem>
<PlotItem name="[cE3_m]" type="Curve2D">
<Parameter name="Line type" type="unsignedInteger" value="0"/>
<Parameter name="Recording Activity" type="string" value="during"/>
<ListOfChannels>
<ChannelSpec cn="CN=Root,Model=Starch Model 2,Reference=Time"/>
<ChannelSpec cn="CN=Root,Model=Starch Model 2,Vector=Compartments[def],Vector=Metabolites[cE3_m],Reference=Concentration"/>
</ListOfChannels>
</PlotItem>
<PlotItem name="[cE3n]" type="Curve2D">
<Parameter name="Line type" type="unsignedInteger" value="0"/>
<Parameter name="Recording Activity" type="string" value="during"/>
<ListOfChannels>
<ChannelSpec cn="CN=Root,Model=Starch Model 2,Reference=Time"/>
<ChannelSpec cn="CN=Root,Model=Starch Model 2,Vector=Compartments[def],Vector=Metabolites[cE3n],Reference=Concentration"/>
</ListOfChannels>
</PlotItem>
<PlotItem name="[cE4]" type="Curve2D">
<Parameter name="Line type" type="unsignedInteger" value="0"/>
<Parameter name="Recording Activity" type="string" value="during"/>
<ListOfChannels>
<ChannelSpec cn="CN=Root,Model=Starch Model 2,Reference=Time"/>
<ChannelSpec cn="CN=Root,Model=Starch Model 2,Vector=Compartments[def],Vector=Metabolites[cE4],Reference=Concentration"/>
</ListOfChannels>
</PlotItem>
<PlotItem name="[cE4_m]" type="Curve2D">
<Parameter name="Line type" type="unsignedInteger" value="0"/>
<Parameter name="Recording Activity" type="string" value="during"/>
<ListOfChannels>
<ChannelSpec cn="CN=Root,Model=Starch Model 2,Reference=Time"/>
<ChannelSpec cn="CN=Root,Model=Starch Model 2,Vector=Compartments[def],Vector=Metabolites[cE4_m],Reference=Concentration"/>
</ListOfChannels>
</PlotItem>
<PlotItem name="[cEC]" type="Curve2D">
<Parameter name="Line type" type="unsignedInteger" value="0"/>
<Parameter name="Recording Activity" type="string" value="during"/>
<ListOfChannels>
<ChannelSpec cn="CN=Root,Model=Starch Model 2,Reference=Time"/>
<ChannelSpec cn="CN=Root,Model=Starch Model 2,Vector=Compartments[def],Vector=Metabolites[cEC],Reference=Concentration"/>
</ListOfChannels>
</PlotItem>
<PlotItem name="[cEG]" type="Curve2D">
<Parameter name="Line type" type="unsignedInteger" value="0"/>
<Parameter name="Recording Activity" type="string" value="during"/>
<ListOfChannels>
<ChannelSpec cn="CN=Root,Model=Starch Model 2,Reference=Time"/>
<ChannelSpec cn="CN=Root,Model=Starch Model 2,Vector=Compartments[def],Vector=Metabolites[cEG],Reference=Concentration"/>
</ListOfChannels>
</PlotItem>
<PlotItem name="[cG]" type="Curve2D">
<Parameter name="Line type" type="unsignedInteger" value="0"/>
<Parameter name="Recording Activity" type="string" value="during"/>
<ListOfChannels>
<ChannelSpec cn="CN=Root,Model=Starch Model 2,Reference=Time"/>
<ChannelSpec cn="CN=Root,Model=Starch Model 2,Vector=Compartments[def],Vector=Metabolites[cG],Reference=Concentration"/>
</ListOfChannels>
</PlotItem>
<PlotItem name="[cG_m]" type="Curve2D">
<Parameter name="Line type" type="unsignedInteger" value="0"/>
<Parameter name="Recording Activity" type="string" value="during"/>
<ListOfChannels>
<ChannelSpec cn="CN=Root,Model=Starch Model 2,Reference=Time"/>
<ChannelSpec cn="CN=Root,Model=Starch Model 2,Vector=Compartments[def],Vector=Metabolites[cG_m],Reference=Concentration"/>
</ListOfChannels>
</PlotItem>
<PlotItem name="[cL]" type="Curve2D">
<Parameter name="Line type" type="unsignedInteger" value="0"/>
<Parameter name="Recording Activity" type="string" value="during"/>
<ListOfChannels>
<ChannelSpec cn="CN=Root,Model=Starch Model 2,Reference=Time"/>
<ChannelSpec cn="CN=Root,Model=Starch Model 2,Vector=Compartments[def],Vector=Metabolites[cL],Reference=Concentration"/>
</ListOfChannels>
</PlotItem>
<PlotItem name="[cLUX]" type="Curve2D">
<Parameter name="Line type" type="unsignedInteger" value="0"/>
<Parameter name="Recording Activity" type="string" value="during"/>
<ListOfChannels>
<ChannelSpec cn="CN=Root,Model=Starch Model 2,Reference=Time"/>
<ChannelSpec cn="CN=Root,Model=Starch Model 2,Vector=Compartments[def],Vector=Metabolites[cLUX],Reference=Concentration"/>
</ListOfChannels>
</PlotItem>
<PlotItem name="[cLUX_m]" type="Curve2D">
<Parameter name="Line type" type="unsignedInteger" value="0"/>
<Parameter name="Recording Activity" type="string" value="during"/>
<ListOfChannels>
<ChannelSpec cn="CN=Root,Model=Starch Model 2,Reference=Time"/>
<ChannelSpec cn="CN=Root,Model=Starch Model 2,Vector=Compartments[def],Vector=Metabolites[cLUX_m],Reference=Concentration"/>
</ListOfChannels>
</PlotItem>
<PlotItem name="[cL_m]" type="Curve2D">
<Parameter name="Line type" type="unsignedInteger" value="0"/>
<Parameter name="Recording Activity" type="string" value="during"/>
<ListOfChannels>
<ChannelSpec cn="CN=Root,Model=Starch Model 2,Reference=Time"/>
<ChannelSpec cn="CN=Root,Model=Starch Model 2,Vector=Compartments[def],Vector=Metabolites[cL_m],Reference=Concentration"/>
</ListOfChannels>
</PlotItem>
<PlotItem name="[cLm]" type="Curve2D">
<Parameter name="Line type" type="unsignedInteger" value="0"/>
<Parameter name="Recording Activity" type="string" value="during"/>
<ListOfChannels>
<ChannelSpec cn="CN=Root,Model=Starch Model 2,Reference=Time"/>
<ChannelSpec cn="CN=Root,Model=Starch Model 2,Vector=Compartments[def],Vector=Metabolites[cLm],Reference=Concentration"/>
</ListOfChannels>
</PlotItem>
<PlotItem name="[cNI]" type="Curve2D">
<Parameter name="Line type" type="unsignedInteger" value="0"/>
<Parameter name="Recording Activity" type="string" value="during"/>
<ListOfChannels>
<ChannelSpec cn="CN=Root,Model=Starch Model 2,Reference=Time"/>
<ChannelSpec cn="CN=Root,Model=Starch Model 2,Vector=Compartments[def],Vector=Metabolites[cNI],Reference=Concentration"/>
</ListOfChannels>
</PlotItem>
<PlotItem name="[cNI_m]" type="Curve2D">
<Parameter name="Line type" type="unsignedInteger" value="0"/>
<Parameter name="Recording Activity" type="string" value="during"/>
<ListOfChannels>
<ChannelSpec cn="CN=Root,Model=Starch Model 2,Reference=Time"/>
<ChannelSpec cn="CN=Root,Model=Starch Model 2,Vector=Compartments[def],Vector=Metabolites[cNI_m],Reference=Concentration"/>
</ListOfChannels>
</PlotItem>
<PlotItem name="[cP]" type="Curve2D">
<Parameter name="Line type" type="unsignedInteger" value="0"/>
<Parameter name="Recording Activity" type="string" value="during"/>
<ListOfChannels>
<ChannelSpec cn="CN=Root,Model=Starch Model 2,Reference=Time"/>
<ChannelSpec cn="CN=Root,Model=Starch Model 2,Vector=Compartments[def],Vector=Metabolites[cP],Reference=Concentration"/>
</ListOfChannels>
</PlotItem>
<PlotItem name="[cP7]" type="Curve2D">
<Parameter name="Line type" type="unsignedInteger" value="0"/>
<Parameter name="Recording Activity" type="string" value="during"/>
<ListOfChannels>
<ChannelSpec cn="CN=Root,Model=Starch Model 2,Reference=Time"/>
<ChannelSpec cn="CN=Root,Model=Starch Model 2,Vector=Compartments[def],Vector=Metabolites[cP7],Reference=Concentration"/>
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<Parameter name="Line type" type="unsignedInteger" value="0"/>
<Parameter name="Recording Activity" type="string" value="during"/>
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<ChannelSpec cn="CN=Root,Model=Starch Model 2,Vector=Compartments[def],Vector=Metabolites[S],Reference=Concentration"/>
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<Parameter name="Recording Activity" type="string" value="during"/>
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<Parameter name="Line type" type="unsignedInteger" value="0"/>
<Parameter name="Recording Activity" type="string" value="during"/>
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<ChannelSpec cn="CN=Root,Model=Starch Model 2,Reference=Time"/>
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</PlotSpecification>
</ListOfPlots>
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</GUI>
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Created: 10th Jan 2019 at 16:42
Last updated: 10th Jan 2019 at 16:53
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Version 1 (earliest) Created 10th Jan 2019 at 16:42 by BioData SynthSys
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Projects: PlaSMo model repository
Institutions: University of Edinburgh
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The Centre for Engineering Biology is the University of Edinburgh's research organisation in interdisciplinary, Synthetic and Systems Biology, founded in 2023 as the successor to SynthSys, itself founded in 2012 as the successor to the Centre for Systems Biology at Edinburgh (CSBE). CSBE was newly founded in 2007. The Centre for Engineering Biology is a hub organisation that links across multiple, major funding awards, including an Engineering Biology Mission Hub, and EPSRC C-loop.
Projects: Millar group, PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops, TiMet, POP - the Parameter Optimisation Problem, Regulation of flowering time in natural conditions, PlaSMo model repository, BioDare1
Web page: https://biology.ed.ac.uk/centre-engineering-biology
Advanced Projects list for this Data file with search and filtering
What is PlaSMo? PlaSMo stands for Plant Systems-biology Modelling Ensuring the achievements of yesterday's Mathematical Modellers will be available for the Systems Biologists of tomorrow.
Our aims
To identify plant mathematical models useful to the UK plant systems biology community, which are currently in a variety of legacy formats and in danger of being lost To represent these models in a declarative XML-based format, which is closer to the systems biology standard SBML To evaluate the behaviour ...
Programme: Centre for Engineering Biology (prev. SynthSys)
Public web page: Not specified
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Collection of models submitted to PLaSMo by Daniel Seaton and automatically transferred to FAIRDOM Hub.
Submitter: BioData SynthSys
Studies: Arabidopsis - starch and the circadian clock, Model 1 (Seaton et al., 20..., Arabidopsis - starch and the circadian clock, Model 2 (Seaton et al., 20..., Arabidopsis - starch and the circadian clock, Model 3 (Seaton et al., 20..., Modelling circadian regulation of flowering time and hypocotyl elongatio...
Assays: Arabidopsis - starch and the circadian clock, Model 1 (Seaton et al., 20..., Arabidopsis - starch and the circadian clock, Model 2 (Seaton et al., 20..., Arabidopsis - starch and the circadian clock, Model 3 (Seaton et al., 20..., Modelling circadian regulation of flowering time and hypocotyl elongatio...
Advanced Studies list for this Data file with search and filtering
A model of the circadian regulation of starch turnover, as published in Seaton, Ebenhoeh, Millar, Pokhilko, "Regulatory principles and experimental approaches to the circadian control of starch turnover", J. Roy. Soc. Interface, 2013. This model is referred to as "Model Variant 2".Related PublicationsSeaton, Ebenhoeh, Millar, Pokhilko (2013). Regulatory principles and experimental approaches to the circadian control of starch turnover. Journal of the Royal Society Interface. Originally submitted ...
Submitter: BioData SynthSys
Investigation: Seaton, Daniel
Assays: Arabidopsis - starch and the circadian clock, Model 2 (Seaton et al., 20...
Advanced Assays list for this Data file with search and filtering
A model of the circadian regulation of starch turnover, as published in Seaton, Ebenhoeh, Millar, Pokhilko, "Regulatory principles and experimental approaches to the circadian control of starch turnover", J. Roy. Soc. Interface, 2013. This model is referred to as "Model Variant 2".Related PublicationsSeaton, Ebenhoeh, Millar, Pokhilko (2013). Regulatory principles and experimental approaches to the circadian control of starch turnover. Journal of the Royal Society Interface. Originally submitted ...
Submitter: BioData SynthSys
Biological problem addressed: Gene Regulatory Network
Investigation: Seaton, Daniel
