_A_05_MSA_3cvs-GFFmerged

Short Name: 05_MSA_3cvs-GFFmerged
Assay Class: DRY
Assay Type: GFFmerged
Title: MSA 3cv and GFF-merged
Description: Multiple sequence alignment of Desiree, PW363, Rywal and ITAG/PGSC
pISA Assay creation date: 2020-03-10
pISA Assay creator: Maja Zagorscak
Phenodata: None
Featuredata:
Data:

DOI: 10.15490/fairdomhub.1.assay.1270.1

Created at: 25th Mar 2020 at 10:42

Contents

/input/folderWithIds/test.IDs1

_p_stRT/_I_STRT/_S_04_stPanTr/_A_05_MSA_3cvs-GFFmerged

  • test.IDs1

/input/folderWithIds/test.IDs2

_p_stRT/_I_STRT/_S_04_stPanTr/_A_05_MSA_3cvs-GFFmerged

  • test.IDs2

/input/my.test.aa.fasta

_p_stRT/_I_STRT/_S_04_stPanTr/_A_05_MSA_3cvs-GFFmerged

  • my.test.aa.fasta

/input/path_to_files.txt

_p_stRT/_I_STRT/_S_04_stPanTr/_A_05_MSA_3cvs-GFFmerged

  • path_to_files.txt

/output/aa_ClustalOmega_singletonsReclustered_DMtetra_45_90_180_off_8_28/Merged_DM-to-tetra.aa.html

_p_stRT/_I_STRT/_S_04_stPanTr/_A_05_MSA_3cvs-GFFmerged

  • Merged_DM-to-tetra.aa.html

/output/gDPR/aa_ClustalOmega_moreThan20_180_off_8_28/Merged_cdhit-est_moreThan20.aa.html

_p_stRT/_I_STRT/_S_04_stPanTr/_A_05_MSA_3cvs-GFFmerged

  • Merged_cdhit-est_moreThan20.aa.html

/output/gDPR/aa_ClustalOmega_upto10_180_off_8_28/Merged_cdhit-est_upTo10.aa.html

_p_stRT/_I_STRT/_S_04_stPanTr/_A_05_MSA_3cvs-GFFmerged

/output/gDPR/aa_ClustalOmega_upto20_180_off_8_28/Merged_cdhit-est_upTo20.aa.html

_p_stRT/_I_STRT/_S_04_stPanTr/_A_05_MSA_3cvs-GFFmerged

/output/gDPR/aa_MAFFT_upto5_180_off_15_28/Merged_cdhit-est_upTo5.aa.html

_p_stRT/_I_STRT/_S_04_stPanTr/_A_05_MSA_3cvs-GFFmerged

/scripts/MSA-commands.txt

_p_stRT/_I_STRT/_S_04_stPanTr/_A_05_MSA_3cvs-GFFmerged

  • MSA-commands.txt

/scripts/MSA.py

_p_stRT/_I_STRT/_S_04_stPanTr/_A_05_MSA_3cvs-GFFmerged

  • MSA.py

/scripts/print.sh

_p_stRT/_I_STRT/_S_04_stPanTr/_A_05_MSA_3cvs-GFFmerged

  • print.sh

/reports/SupplementaryFile2.html

Supplementary File 2 - Multiple sequence alignments using ClustalOmega v1.2.1 or MAFFT v7.271 and MView v1.66. Paralogue clusters on representative and alternative sequences, at least one from each of the four genotypes.
Layer _p_stRT/_I_STRT/_S_04_stPanTr/_A_05_MSA_3cvs-GFFmerged

  • Supplementary File 2.html

/_Assay_METADATA.TXT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_05_MSA_3cvs-GFFmerged

  • _Assay_METADATA.TXT

/input/README.MD

_p_stRT/_I_STRT/_S_04_stPanTr/_A_05_MSA_3cvs-GFFmerged

  • README.MD

/output/README.MD

_p_stRT/_I_STRT/_S_04_stPanTr/_A_05_MSA_3cvs-GFFmerged

  • README.MD

/README.MD

_p_stRT/_I_STRT/_S_04_stPanTr/_A_05_MSA_3cvs-GFFmerged

  • README.MD

/scripts/README.MD

_p_stRT/_I_STRT/_S_04_stPanTr/_A_05_MSA_3cvs-GFFmerged

  • README.MD
Fingerprints

These checksums allow you to check a Snapshot you have downloaded hasn't been modified. For details on how to use these please visit this guide

MD5: 60734bbafa6e9cc8e2a9cdff4fa572eb

SHA1: 8a502b2fd091946d8b9ab91f6cc2525043eea70b

Citation
Blejec, A. (2020). _A_05_MSA_3cvs-GFFmerged. FAIRDOMHub. http://doi.org/10.15490/FAIRDOMHUB.1.ASSAY.1270.1
Snapshots
Snapshot 2 (12th Apr 2020) DOI
Snapshot 1 (25th Mar 2020) DOI
Activity

Views: 117   Downloads: 1

Created: 25th Mar 2020 at 10:42

Last updated: 25th Mar 2020 at 10:42

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