Assay: _A_04_TransRate Short Name: 04_TransRate Assay Class: DRY Assay Type: TransRate Title: TransRate post filtering and reassignment Description: TransRate post filtering and reassignment pISA Assay creation date: 2019-10-22 pISA Assay creator: Maja Zagorscak Phenodata: None Featuredata: None Data: see ./input/path_to_files.txt

DOI: 10.15490/fairdomhub.1.assay.1172.1

Zenodo URL: None

Created at: 26th Nov 2019 at 11:19



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  • path_to_files.txt


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  • output.tar


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  • run_TransRate_commands.sh

Cultivar-specific transcriptome and pan-transcriptome reconstruction of tetraploid potato

Background: Although the reference genome of Solanum tuberosum group Phureja double-monoploid (DM) clone is available, knowledge on the genetic diversity of the highly heterozygous tetraploid group Tuberosum, representing most cultivated varieties, remains largely unexplored. This lack of knowledge hinders further progress in potato research and its subsequent applications in breeding.
Results: For the DM genome assembly, two only partially-overlapping gene models exist differing in a unique set


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Zagorscak, M. (2019). _A_04_TransRate. FAIRDOMHub. https://doi.org/10.15490/FAIRDOMHUB.1.ASSAY.1172.1
Snapshot 1 (26th Nov 2019) DOI

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Created: 26th Nov 2019 at 11:19

Last updated: 26th Nov 2019 at 11:19

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