_A_03.1_filtering

Assay: _A_03.1_filtering
Short Name: 03.1_filtering
Assay Class: DRY
Assay Type: filtering
Title: Filtering according to biological evidence; removal of contaminants, chimeras and suspicious constructs
Description: Filtering according to biological evidence; removal of contaminants, chimeras and suspicious constructs
pISA Assay creation date: 2019-10-22
pISA Assay creator: Maja Zagorscak
Phenodata: None
Featuredata: None
Data: see ./input/path_to_files.txt

DOI: 10.15490/fairdomhub.1.assay.1170.1

Created at: 26th Nov 2019 at 12:09

Contents

/output/Desiree_tr.cds.tsv.gz

Supplementary Table S3
Désirée biological evidence filtering results. Output of 1st filtering step by biological evidence for cv. Désirée.

  • Desiree_tr.cds.tsv.gz

/output/PW363_tr.cds.tsv.gz

Supplementary Table S4
PW363 biological evidence filtering results. Output of 1st filtering step by biological evidence for breeding clone PW363.

  • PW363_tr.cds.tsv.gz

/output/Rywal_tr.cds.tsv.gz

Supplementary Table S5
Rywal biological evidence filtering results. Output of 1st filtering step by biological evidence for cv. Rywal.

  • Rywal_tr.cds.tsv.gz

/scripts/scripts.tar

No description specified

  • scripts.tar

/output/other/output_full.tar.gz

No description specified

  • output_full.tar.gz

/output/other/output_summary.tar.gz

No description specified

  • output_summary.tar.gz

/input/input.tar

No description specified

  • input.tar

/intermediate/intermediate.tar

No description specified

  • intermediate.tar

/reports/03.1_Rywal_combo_withFiltering.html

No description specified

  • 03.1_Rywal_combo_withFiltering.html

/reports/03.2_PW363_combo_withFiltering.html

No description specified

  • 03.2_PW363_combo_withFiltering.html

/reports/03.3_Desiree_combo_withFiltering.html

No description specified

  • 03.3_Desiree_combo_withFiltering.html

Cultivar-specific transcriptome and pan-transcriptome reconstruction of tetraploid potato

Background: Although the reference genome of Solanum tuberosum group Phureja double-monoploid (DM) clone is available, knowledge on the genetic diversity of the highly heterozygous tetraploid group Tuberosum, representing most cultivated varieties, remains largely unexplored. This lack of knowledge hinders further progress in potato research and its subsequent applications in breeding.
Results: For the DM genome assembly, two only partially-overlapping gene models exist differing in a unique set
...

/_Assay_METADATA.TXT

No description specified

  • _Assay_METADATA.TXT

/README.MD

No description specified

  • README.MD
Fingerprints

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MD5: 25eda97337c3b3b8b843224dbdb17da8

SHA1: ea145af96858a1fef6b14dd534ecf79bae5b23c3

Citation
Zagorscak, M. (2019). _A_03.1_filtering. FAIRDOMHub. http://doi.org/10.15490/FAIRDOMHUB.1.ASSAY.1170.1
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Snapshot 1 (26th Nov 2019) DOI
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Created: 26th Nov 2019 at 12:09

Last updated: 26th Nov 2019 at 12:09

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