_A_02.7_VecScreen

Assay: _A_02.7_VecScreen Short Name: 02.7_VecScreen Assay Class: DRY Assay Type: VecScreen Title: VecScreen on raw tr2aacds output Description: VecScreen (contamination screening) and blastn (contaminants annotation) on raw (initial) tr2aacds output pISA Assay creation date: 2019-10-22 pISA Assay creator: Maja Zagorscak Phenodata: None Featuredata: None Data: see ./input/path_to_files.txt

DOI: 10.15490/fairdomhub.1.assay.1168.1

Zenodo URL: None

Created at: 26th Nov 2019 at 12:08

Contents

/input/path_to_files.txt

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  • path_to_files.txt

/intermediate.tar.gz

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  • intermediate.tar.gz

/output/Desiree_vecscreen.tsv

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  • Desiree_vecscreen.tsv

/output/PW363_vecscreen.tsv

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  • PW363_vecscreen.tsv

/output/Rywal_vecscreen.tsv

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  • Rywal_vecscreen.tsv

/scripts/01_get_input.sh

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  • 01_get_input.sh

/scripts/02_VecScreenPlus_blastn.sh

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  • 02_VecScreenPlus_blastn.sh

/scripts/ENCH_sumablastplus.pl

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  • ENCH_sumablastplus.pl

Cultivar-specific transcriptome and pan-transcriptome reconstruction of tetraploid potato

Background: Although the reference genome of Solanum tuberosum group Phureja double-monoploid (DM) clone is available, knowledge on the genetic diversity of the highly heterozygous tetraploid group Tuberosum, representing most cultivated varieties, remains largely unexplored. This lack of knowledge hinders further progress in potato research and its subsequent applications in breeding.
Results: For the DM genome assembly, two only partially-overlapping gene models exist differing in a unique set
...

/_Assay_METADATA.TXT

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  • _Assay_METADATA.TXT

/README.MD

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  • README.MD
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MD5: 8fc488f1024f73fd08c08a10eca6790d

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Citation
Zagorscak, M. (2019). _A_02.7_VecScreen. FAIRDOMHub. https://doi.org/10.15490/FAIRDOMHUB.1.ASSAY.1168.1
Snapshots
Snapshot 1 (26th Nov 2019) DOI
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Created: 26th Nov 2019 at 12:08

Last updated: 26th Nov 2019 at 12:08

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