Assay: _A_02.6_TransRate Short Name: 02.6_TransRate Assay Class: DRY Assay Type: TransRate Title: TransRate stat on raw tr2aacds transcriptomes Description: TransRate stat on raw (initial) tr2aacds transcriptomes, basic and reference-based pISA Assay creation date: 2019-10-22 pISA Assay creator: Maja Zagorscak Phenodata: None Featuredata: Nonde Data: see ./input/path_to_files.txt

DOI: 10.15490/fairdomhub.1.assay.1167.1

Zenodo URL: None

Created at: 26th Nov 2019 at 11:07



No description specified

  • input.tar


No description specified

  • output.tar


No description specified

  • scripts.tar

Cultivar-specific transcriptome and pan-transcriptome reconstruction of tetraploid potato

Background: Although the reference genome of Solanum tuberosum group Phureja double-monoploid (DM) clone is available, knowledge on the genetic diversity of the highly heterozygous tetraploid group Tuberosum, representing most cultivated varieties, remains largely unexplored. This lack of knowledge hinders further progress in potato research and its subsequent applications in breeding.
Results: For the DM genome assembly, two only partially-overlapping gene models exist differing in a unique set


No description specified



No description specified


These checksums allow you to check a Snapshot you have downloaded hasn't been modified. For details on how to use these please visit this guide

MD5: 1eb1a2df376f9496a51d48fe96552331

SHA1: 9453dd511feef4668288fc50238093603ed1e369

Zagorscak, M. (2019). _A_02.6_TransRate. FAIRDOMHub. https://doi.org/10.15490/FAIRDOMHUB.1.ASSAY.1167.1
Snapshot 1 (26th Nov 2019) DOI

Views: 1053   Downloads: 11

Created: 26th Nov 2019 at 11:07

Last updated: 26th Nov 2019 at 11:07

Powered by
Copyright © 2008 - 2024 The University of Manchester and HITS gGmbH