Assay: _A_02.5_STARlong_matchAnnot Short Name: 02.5_STARlong_matchAnnot Assay Class: DRY Assay Type: matchAnnot Title: potato transcriptome v2 (evigene) STARlong mapping of transcripts to reference genome and MatchAnnot to get transcript annotations Description: potato initial transcriptome (evigene) STARlong mapping of transcripts to reference genome and MatchAnnot to get transcript annotations pISA Assay creation date: 2019-10-22 pISA Assay creator: Marko Petek Phenodata: None Featuredata: None Data: see ./input/path_to_files.txt

DOI: 10.15490/fairdomhub.1.assay.1166.1

Zenodo URL: None

Created at: 26th Nov 2019 at 12:07



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  • path_to_files.txt


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  • output_1_STARlong-logs-n-SJ.tar.gz


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  • output_2_matchAnnot-parsed-txt.tar.gz


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  • STARlongMatchAnnot_commands_ENCODE_denovo_param.txt

Cultivar-specific transcriptome and pan-transcriptome reconstruction of tetraploid potato

Background: Although the reference genome of Solanum tuberosum group Phureja double-monoploid (DM) clone is available, knowledge on the genetic diversity of the highly heterozygous tetraploid group Tuberosum, representing most cultivated varieties, remains largely unexplored. This lack of knowledge hinders further progress in potato research and its subsequent applications in breeding.
Results: For the DM genome assembly, two only partially-overlapping gene models exist differing in a unique set





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Zagorscak, M., & Petek, M. (2019). _A_02.5_STARlong_matchAnnot. FAIRDOMHub. https://doi.org/10.15490/FAIRDOMHUB.1.ASSAY.1166.1
Snapshot 1 (26th Nov 2019) DOI

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Created: 26th Nov 2019 at 12:07

Last updated: 26th Nov 2019 at 12:07

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