_A_02.3_InterProScan

Assay: _A_02.3_InterProScan Short Name: 02.3_InterProScan Assay Class: DRY Assay Type: InterProScan Title: InterProScan on tr2aacds output Description: InterProScan on tr2aacds output pISA Assay creation date: 2019-10-22 pISA Assay creator: Marko Petek Phenodata: None Featuredata: None Data: see ./input/path_to_files.txt

DOI: 10.15490/fairdomhub.1.assay.1164.1

Zenodo URL: None

Created at: 26th Nov 2019 at 12:06

Contents

/input/path_to_files.txt

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  • path_to_files.txt

/intermediate/intermediate.tar

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  • intermediate.tar

/output/Desiree_IPS_filtered_aggregated_filtered.tsv

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  • Desiree_IPS_filtered_aggregated_filtered.tsv

/output/PW363_IPS_filtered_aggregated_filtered.tsv

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  • PW363_IPS_filtered_aggregated_filtered.tsv

/output/Rywal_IPS_filtered_aggregated_filtered.tsv

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  • Rywal_IPS_filtered_aggregated_filtered.tsv

/reports/IPS_PowerQuery_PivotTable.xlsx

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  • IPS_PowerQuery_PivotTable.xlsx

/scripts/01_potato_tr_evigene_IPS_commands.txt

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  • 01_potato_tr_evigene_IPS_commands.txt

/scripts/02_reshape_merge_aggregate_filter.Rmd

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  • 02_reshape_merge_aggregate_filter.Rmd

Cultivar-specific transcriptome and pan-transcriptome reconstruction of tetraploid potato

Background: Although the reference genome of Solanum tuberosum group Phureja double-monoploid (DM) clone is available, knowledge on the genetic diversity of the highly heterozygous tetraploid group Tuberosum, representing most cultivated varieties, remains largely unexplored. This lack of knowledge hinders further progress in potato research and its subsequent applications in breeding.
Results: For the DM genome assembly, two only partially-overlapping gene models exist differing in a unique set
...

/_Assay_METADATA.TXT

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  • _Assay_METADATA.TXT

/README.MD

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  • README.MD
Fingerprints

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MD5: a22350f7e2784c3a8a0e68e7332d1a61

SHA1: 6a4bb2306415413c7b1ed5ccf000d5074d4c8530

Citation
Zagorscak, M., & Petek, M. (2019). _A_02.3_InterProScan. FAIRDOMHub. https://doi.org/10.15490/FAIRDOMHUB.1.ASSAY.1164.1
Snapshots
Snapshot 1 (26th Nov 2019) DOI
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Created: 26th Nov 2019 at 12:06

Last updated: 26th Nov 2019 at 12:06

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